UHGV-0161364 (vOTU-046304)

Viral Genome: UHGV-0161364

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0161364
vOTU ID	vOTU-046304
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_480755
Associated BioSample	SAMN06115527
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9804
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.46
Jumbo phage	No

Genome content
Genome length (bp)	37,256
GC content	59.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	92%
Average CDS length (bps)	561.44
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0161364_1	phrog_32744	135.4	4.6e-40	N/A	unknown function
PHROG	UHGV-0161364_2	phrog_3904	71.5	6.1e-21	tail fiber protein	tail
eggNOG-mapper	UHGV-0161364_2	1226322.HMPREF1545_00064	73.9	0.0000000000362	N/A	N/A
PHROG	UHGV-0161364_3	phrog_4105	75.3	7.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0161364_3	428125.CLOLEP_01431	53.9	0.0000000667	N/A	N/A
PHROG	UHGV-0161364_4	phrog_13256	69.7	2.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0161364_4	1226322.HMPREF1545_00132	71.2	0.00000000000000135	N/A	N/A
KOfam	UHGV-0161364_6	K08640	91.3	1.7e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0161364_6	phrog_18955	152.5	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0161364_6	UniRef90_UPI001C035E39	594.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0161364_6	1235797.C816_04171	336.0	0	Peptidase M15	N/A
Pfam	UHGV-0161364_6	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0161364_6	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0161364_6	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0161364_6	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0161364_7	PF04545,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0161364_8	PF01402,NF008671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0161364_15	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0161364_17	1378168.N510_03079	62.4	0.00000000249	N/A	N/A
KOfam	UHGV-0161364_18	K14059	101.7	1.3e-29	int; integrase	N/A
PHROG	UHGV-0161364_18	phrog_1	128.4	8e-38	integrase	integration and excision
UniRef90	UHGV-0161364_18	UniRef90_G4L0W3	501.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0161364_18	693746.OBV_43340	501.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0161364_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0161364_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0161364_18	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-0161364_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0161364_19	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0161364_20	742741.HMPREF9475_00398	61.2	0.00000000613	N/A	N/A
KOfam	UHGV-0161364_22	K07729	63.3	5.9e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0161364_22	phrog_8	50.1	0.000000000000071	transcriptional regulator	transcription regulation
UniRef90	UHGV-0161364_22	UniRef90_UPI00030EB95F	70.1	0.0000000000000162	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0161364_22	1007096.BAGW01000011_gene2356	70.1	0.00000000000000272	sequence-specific DNA binding	N/A
Pfam	UHGV-0161364_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0161364_22	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0161364_22	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0161364_23	1235835.C814_03153	80.1	3.69e-19	N/A	N/A
structural_annotation	UHGV-0161364_23	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0161364_24	phrog_6499	140.6	3.89981e-42	transcriptional regulator	transcription regulation
UniRef90	UHGV-0161364_24	UniRef90_UPI001C01DF91	147.0	2.34003e-41	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0161364_24	1226322.HMPREF1545_00092	128.0	1.21e-34	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0161364_24	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0161364_24	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0161364_24	PF01381,NF040522,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0161364_25	phrog_270	93.7	2.8e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161364_25	UniRef90_UPI001ADEF5BC	178.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0161364_25	742738.HMPREF9460_00851	167.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0161364_25	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0161364_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0161364_25	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0161364_26	K02314	347.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0161364_26	phrog_19	279.0	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161364_26	UniRef90_UPI001875E60F	281.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0161364_26	742738.HMPREF9460_00852	258.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0161364_26	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0161364_26	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0161364_26	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0161364_26	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0161364_28	K03496	210.4	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0161364_28	phrog_164	174.1	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161364_28	UniRef90_UPI001BB48231	283.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0161364_28	693746.OBV_19850	224.0	0	Anion-transporting ATPase	N/A
Pfam	UHGV-0161364_28	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0161364_28	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0161364_28	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0161364_29	K03497	64.9	4.7e-19	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0161364_29	phrog_27290	446.8	0	N/A	unknown function
UniRef90	UHGV-0161364_29	UniRef90_UPI001C029D7C	808.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0161364_29	742738.HMPREF9460_00856	325.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0161364_29	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0161364_29	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0161364_29	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0161364_32	K03111	135.8	5e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0161364_32	phrog_44	132.7	2.8e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161364_32	UniRef90_UPI001C02B0E9	239.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0161364_32	693746.OBV_12860	199.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0161364_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0161364_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0161364_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0161364_32	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0161364_32	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0161364_33	UniRef90_A0A2V2EEG3	82.8	3.74e-17	N/A	N/A
Pfam	UHGV-0161364_33	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0161364_34	phrog_757	177.9	0	DNA methyltransferase	other
UniRef90	UHGV-0161364_34	UniRef90_UPI001C00B13F	404.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0161364_34	748224.HMPREF9436_03069	317.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0161364_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0161364_34	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-0161364_35	UniRef90_A0A845MZZ9	114.0	2.22e-30	N/A	N/A
Pfam	UHGV-0161364_35	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0161364_36	PF06657	N/A	N/A	N/A	N/A
PHROG	UHGV-0161364_40	phrog_22543	47.7	0.00000000000028	N/A	unknown function
UniRef90	UHGV-0161364_40	UniRef90_A0A8D9PDT5	54.3	0.000000407	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-0161364_43	phrog_3584	72.7	5.2e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0161364_43	693746.OBV_19950	300.0	0	N/A	N/A
structural_annotation	UHGV-0161364_43	PF05840	N/A	N/A	N/A	N/A
UniRef90	UHGV-0161364_44	UniRef90_UPI001F232519	83.6	7.58e-20	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0161364_44	1226322.HMPREF1545_00110	97.4	4e-26	Cysteine-rich KTR	N/A
Pfam	UHGV-0161364_44	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
PHROG	UHGV-0161364_45	phrog_144	91.4	1e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0161364_45	UniRef90_UPI001EDE5545	176.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0161364_45	693746.OBV_19960	164.0	0	HNH endonuclease	N/A
Pfam	UHGV-0161364_45	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0161364_45	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0161364_45	PF01844,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0161364_46	K00571	126.7	2.9e-37	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0161364_46	phrog_498	410.0	0	DNA methyltransferase	other
UniRef90	UHGV-0161364_46	UniRef90_A0A1V5IAX9	374.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0161364_46	693746.OBV_19980	323.0	0	DNA methylase	N/A
PADLOC	UHGV-0161364_46	MTase_II_00015	379.5	0	Type II methyltransferase	RM
Pfam	UHGV-0161364_46	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0161364_46	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0161364_46	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0161364_46	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0161364_47	phrog_83	85.9	5.2e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0161364_47	UniRef90_UPI001EDE2A13	233.0	0	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0161364_47	1007096.BAGW01000012_gene2373	144.0	1.04999e-41	Phage terminase, small subunit	N/A
Pfam	UHGV-0161364_47	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0161364_47	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0161364_47	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0161364_47	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0161364_48	phrog_9	325.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0161364_48	UniRef90_A0A845R4S1	921.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0161364_48	742738.HMPREF9460_00872	795.0	0	Phage Terminase	N/A
Pfam	UHGV-0161364_48	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0161364_48	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0161364_48	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0161364_48	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0161364_50	phrog_12	254.8	0	portal protein	head and packaging
UniRef90	UHGV-0161364_50	UniRef90_UPI001958B72F	566.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0161364_50	1007103.AFHW01000142_gene1297	176.0	0	Phage portal protein	N/A
Pfam	UHGV-0161364_50	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0161364_50	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0161364_50	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0161364_50	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0161364_51	K01358	103.4	3.2e-30	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0161364_51	phrog_94	193.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0161364_51	UniRef90_UPI00124513AA	301.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0161364_51	557436.Lreu_1115	149.0	1.82001e-41	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0161364_51	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0161364_51	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0161364_51	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0161364_52	phrog_10	89.1	6.4e-26	major head protein	head and packaging
UniRef90	UHGV-0161364_52	UniRef90_UPI000B37FFEF	484.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0161364_52	411902.CLOBOL_03879	119.0	4.5e-27	Phage capsid family	N/A
Pfam	UHGV-0161364_52	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0161364_52	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0161364_52	PF05065,PF14182,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0161364_53	UniRef90_UPI001C018007	105.0	4e-27	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0161364_53	742738.HMPREF9460_00878	92.8	4.95e-23	N/A	N/A
NCBIFam	UHGV-0161364_53	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0161364_53	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0161364_54	phrog_25	55.4	0.0000000000000011	head closure Hc1	connector
UniRef90	UHGV-0161364_54	UniRef90_UPI001898DBDF	100.0	4.21e-25	phage head closure protein	N/A
Pfam	UHGV-0161364_54	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0161364_54	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0161364_54	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0161364_54	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0161364_55	UniRef90_A0A4S2AEF8	59.7	0.00000000381	Phage tail protein	N/A
eggNOG-mapper	UHGV-0161364_55	1203606.HMPREF1526_00975	75.9	3.02e-16	N/A	N/A
structural_annotation	UHGV-0161364_55	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0161364_56	UniRef90_R5IIS5	95.1	2.53e-22	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0161364_56	1203606.HMPREF1526_00974	84.3	7.04e-19	N/A	N/A
structural_annotation	UHGV-0161364_56	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0161364_57	phrog_88	50.8	0.000000000000033	major tail protein	tail
UniRef90	UHGV-0161364_57	UniRef90_R5EB96	193.0	0	Phage major tail protein phi13 family	N/A
structural_annotation	UHGV-0161364_57	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0161364_59	phrog_23464	229.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0161364_59	33035.JPJF01000023_gene3232	234.0	0	phage tail tape measure protein	N/A
COG	UHGV-0161364_59	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0161364_59	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0161364_61	phrog_32744	549.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0161364_61	1120998.AUFC01000030_gene2247	199.0	0	N/A	N/A