UHGV-0162350 (vOTU-056392)

Viral Genome: UHGV-0162350

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0162350
vOTU ID	vOTU-056392
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_515623
Associated BioSample	SAMN06165007
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.15
Jumbo phage	No

Genome content
Genome length (bp)	38,226
GC content	58.04%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	95%
Average CDS length (bps)	516.43
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0162350_4	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0162350_7	PF10548	N/A	N/A	N/A	N/A
KOfam	UHGV-0162350_10	K22300	51.4	0.000000000000025	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0162350_10	phrog_2967	49.9	0.000000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-0162350_10	UniRef90_A0A1Y4L0A2	127.0	1.87e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0162350_10	1235797.C816_03553	97.8	6.11e-24	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0162350_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0162350_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0162350_10	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0162350_12	622312.ROSEINA2194_02761	59.3	0.0000000495	NOG18738 non supervised orthologous group	N/A
COG	UHGV-0162350_12	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-0162350_12	PF02805	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_13	phrog_10292	74.2	1e-21	N/A	unknown function
UniRef90	UHGV-0162350_13	UniRef90_A0A416W984	96.7	4.51e-23	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0162350_13	537013.CLOSTMETH_02269	81.6	1.39e-17	TM2 domain	N/A
Pfam	UHGV-0162350_13	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0162350_13	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0162350_13	COG2314	N/A	N/A	N/A	N/A
Pfam	UHGV-0162350_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0162350_14	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0162350_14	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0162350_15	K06400	377.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0162350_15	phrog_95	365.1	0	integrase	integration and excision
UniRef90	UHGV-0162350_15	UniRef90_UPI00189960B8	503.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0162350_15	1235835.C814_00825	409.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0162350_15	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0162350_15	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0162350_15	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0162350_15	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0162350_15	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0162350_16	UniRef90_A0A7M1RTM1	75.5	0.0000000000000625	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0162350_16	1378168.N510_03079	70.1	0.00000000000285	N/A	N/A
PHROG	UHGV-0162350_21	phrog_25567	41.0	0.000000000025	N/A	unknown function
UniRef90	UHGV-0162350_21	UniRef90_UPI00164AED9E	92.4	4.75e-22	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0162350_21	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0162350_21	PF13560,NF040522,COG2944	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0162350_23	760568.Desku_0885	58.5	0.000000065	N/A	N/A
structural_annotation	UHGV-0162350_23	PF14528,PF05204,MF_01420,TIGR00647,COG3780	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0162350_24	PF13412,MF_00674,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_25	phrog_14030	146.2	1.90577e-43	N/A	unknown function
UniRef90	UHGV-0162350_25	UniRef90_R6LL81	245.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0162350_25	1121866.AUGK01000003_gene1444	93.2	5.1e-19	amidase activity	N/A
COG	UHGV-0162350_25	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0162350_26	phrog_13256	62.4	4.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0162350_26	1226322.HMPREF1545_00166	67.4	0.0000000000000797	N/A	N/A
structural_annotation	UHGV-0162350_29	PF14600	N/A	N/A	N/A	N/A
Pfam	UHGV-0162350_31	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
NCBIFam	UHGV-0162350_31	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
structural_annotation	UHGV-0162350_31	PF13306	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_33	phrog_10898	42.1	0.000000000014	N/A	unknown function
structural_annotation	UHGV-0162350_33	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_34	phrog_10898	288.2	0	N/A	unknown function
UniRef90	UHGV-0162350_34	UniRef90_A0A7U3NJT3	191.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0162350_34	717606.PaecuDRAFT_2136	69.7	0.0000000000618	S-layer homology domain	N/A
COG	UHGV-0162350_34	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-0162350_34	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0162350_36	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0162350_38	PF18614,MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_39	phrog_26795	142.7	1.10002e-42	N/A	unknown function
eggNOG-mapper	UHGV-0162350_39	1382315.JPOI01000001_gene271	143.0	8.26e-37	N/A	N/A
structural_annotation	UHGV-0162350_39	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_40	phrog_37549	79.3	1.1e-23	virion structural protein	head and packaging
UniRef90	UHGV-0162350_40	UniRef90_A0A3D0W045	224.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0162350_40	1195236.CTER_5103	129.0	1.75e-28	N/A	N/A
structural_annotation	UHGV-0162350_40	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_41	phrog_33680	150.3	1.12104e-44	N/A	unknown function
UniRef90	UHGV-0162350_41	UniRef90_A0A2Z4I560	228.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0162350_41	1195236.CTER_5104	210.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0162350_41	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0162350_41	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0162350_43	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_44	phrog_88	83.0	3.8e-24	major tail protein	tail
UniRef90	UHGV-0162350_44	UniRef90_S0FUN2	115.0	6.67e-29	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0162350_44	1195236.CTER_5106	115.0	1.12e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0162350_44	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0162350_44	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0162350_44	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_45	phrog_5	41.9	0.000000000022	tail completion or Neck1 protein	connector
structural_annotation	UHGV-0162350_45	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0162350_46	1487921.DP68_11350	60.5	0.000000000198	N/A	N/A
structural_annotation	UHGV-0162350_46	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_47	phrog_1951	75.8	4.1e-22	head-tail adaptor	connector
UniRef90	UHGV-0162350_47	UniRef90_UPI001B02B074	64.7	0.0000000000183	phage head closure protein	N/A
eggNOG-mapper	UHGV-0162350_47	1094508.Tsac_2422	55.1	0.0000000202	Phage head-tail joining protein	N/A
Pfam	UHGV-0162350_47	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0162350_47	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0162350_47	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0162350_47	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_48	phrog_5223	45.7	0.00000000000089	neck protein	connector
UniRef90	UHGV-0162350_48	UniRef90_B6W9Y5	62.0	0.000000000181	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0162350_48	561177.ANHYDRO_01411	62.0	0.0000000000304	N/A	N/A
PHROG	UHGV-0162350_49	phrog_10	180.0	0	major head protein	head and packaging
UniRef90	UHGV-0162350_49	UniRef90_UPI00189AE5FE	407.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0162350_49	1280689.AUJC01000011_gene1521	388.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0162350_49	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0162350_49	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0162350_49	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0162350_49	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0162350_50	K01358	129.7	3.6e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0162350_50	phrog_94	199.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0162350_50	UniRef90_UPI0018979DC8	206.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0162350_50	1280689.AUJC01000011_gene1520	188.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0162350_50	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0162350_50	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0162350_50	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_51	phrog_12	178.5	0	portal protein	head and packaging
UniRef90	UHGV-0162350_51	UniRef90_C4GAS6	499.0	0	Putative phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0162350_51	626523.GCWU000342_01027	499.0	0	Portal protein	N/A
Pfam	UHGV-0162350_51	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0162350_51	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0162350_51	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_52	phrog_9	379.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0162350_52	UniRef90_A0A1Y3W5R1	788.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0162350_52	1203606.HMPREF1526_00981	734.0	0	Terminase	N/A
Pfam	UHGV-0162350_52	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0162350_52	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0162350_52	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0162350_52	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_53	phrog_1066	130.9	4.4e-39	N/A	unknown function
eggNOG-mapper	UHGV-0162350_53	1382358.JHVN01000024_gene1703	122.0	2.74e-34	N/A	N/A
structural_annotation	UHGV-0162350_53	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_54	phrog_119	47.8	0.00000000000019	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0162350_54	UniRef90_A0A174XSZ8	123.0	3.38e-34	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-0162350_54	1235793.C809_01915	118.0	1.41e-32	HNH endonuclease	N/A
Pfam	UHGV-0162350_54	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0162350_54	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0162350_55	1297617.JPJD01000059_gene2640	76.3	7.19e-16	N/A	N/A
structural_annotation	UHGV-0162350_55	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_56	phrog_3584	112.3	3.9e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0162350_56	537013.CLOSTMETH_02141	72.0	0.00000000000128	N/A	N/A
structural_annotation	UHGV-0162350_56	PF21578,MF_00360	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0162350_61	PF10013	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_63	phrog_190	101.5	8.8e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0162350_63	UniRef90_UPI0006C2AC63	138.0	5.03e-39	N/A	N/A
eggNOG-mapper	UHGV-0162350_63	1226322.HMPREF1545_00295	118.0	1.34e-31	N/A	N/A
Pfam	UHGV-0162350_63	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0162350_63	PF06356	N/A	N/A	N/A	N/A
Pfam	UHGV-0162350_66	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0162350_66	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_67	phrog_38832	47.6	1.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0162350_67	665956.HMPREF1032_00143	65.1	0.0000000000829	N/A	N/A
PHROG	UHGV-0162350_68	phrog_15609	232.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0162350_68	1501230.ET33_21155	121.0	6.99e-29	N/A	N/A
Pfam	UHGV-0162350_68	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0162350_68	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-0162350_68	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_69	phrog_8470	260.6	0	N/A	unknown function
UniRef90	UHGV-0162350_69	UniRef90_UPI0002D9F0BD	305.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0162350_69	1007096.BAGW01000031_gene117	305.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0162350_69	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0162350_69	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0162350_70	phrog_36399	55.3	0.0000000000000014	N/A	unknown function