UHGV-0163071 (vOTU-046332)

Viral Genome: UHGV-0163071

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0163071
vOTU ID	vOTU-046332
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_550461
Associated BioSample	SAMN06233224
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9794
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.42
Jumbo phage	No

Genome content
Genome length (bp)	32,241
GC content	60.78%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	94%
Average CDS length (bps)	628.44
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0163071_1	phrog_4105	98.8	3.2e-29	N/A	unknown function
UniRef90	UHGV-0163071_1	UniRef90_A0A8D9UHA9	138.0	1.64e-40	Holin protein	N/A
eggNOG-mapper	UHGV-0163071_1	742733.HMPREF9469_05011	114.0	1.77e-31	N/A	N/A
PHROG	UHGV-0163071_2	phrog_881	91.3	5.2e-27	holin	lysis
UniRef90	UHGV-0163071_2	UniRef90_UPI00189D3A4F	84.7	3.24e-20	phage holin	N/A
eggNOG-mapper	UHGV-0163071_2	742740.HMPREF9474_02251	82.0	7.04e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-0163071_2	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0163071_2	PF16938,COG3237	N/A	N/A	N/A	N/A
KOfam	UHGV-0163071_3	K01448	51.8	0.000000000000013	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0163071_3	phrog_435	71.8	1.3e-20	endolysin	lysis
UniRef90	UHGV-0163071_3	UniRef90_A0A810PUG7	210.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0163071_3	994573.T472_0212035	81.6	0.00000000000000124	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0163071_3	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0163071_3	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0163071_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0163071_3	PF01520,PF01471,MF_00562,TIGR02883,COG0860,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-0163071_6	K14059	46.4	0.00000000000078	int; integrase	N/A
PHROG	UHGV-0163071_6	phrog_1	43.4	0.0000000000055	integrase	integration and excision
UniRef90	UHGV-0163071_6	UniRef90_A0A7C2BPB4	62.8	0.000000000198	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0163071_6	1514668.JOOA01000001_gene242	87.8	4.41e-19	Phage integrase family	N/A
Pfam	UHGV-0163071_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0163071_6	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
KOfam	UHGV-0163071_7	K14059	97.9	1.8e-28	int; integrase	N/A
PHROG	UHGV-0163071_7	phrog_1	97.0	2.5e-28	integrase	integration and excision
UniRef90	UHGV-0163071_7	UniRef90_UPI0013EF4EFD	187.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0163071_7	1226322.HMPREF1545_00144	164.0	0	Belongs to the 'phage' integrase family	N/A
COG	UHGV-0163071_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0163071_7	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0163071_8	1262449.CP6013_2082	169.0	0	N/A	N/A
structural_annotation	UHGV-0163071_8	PF11631,TIGR03066	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163071_10	UniRef90_A0A1Y4C9D7	97.1	8.99e-24	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0163071_10	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0163071_10	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0163071_11	K02342	165.9	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0163071_11	phrog_192	139.4	1.90002e-41	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163071_11	UniRef90_A0A1Y4S764	148.0	1.96e-37	BRCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0163071_11	1410674.JNKU01000049_gene1948	115.0	5.12e-27	EXOIII	N/A
PADLOC	UHGV-0163071_11	cd06127	118.2	1.1e-34	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0163071_11	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0163071_11	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0163071_11	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0163071_11	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0163071_11	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
KOfam	UHGV-0163071_13	K22300	60.9	2.9e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0163071_13	phrog_4836	42.2	0.000000000012	CII-like regulator	transcription regulation
UniRef90	UHGV-0163071_13	UniRef90_UPI000F0D19B9	54.3	0.0000000308	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0163071_13	1226322.HMPREF1545_02518	49.3	0.00000437	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0163071_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0163071_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0163071_13	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0163071_14	K22300	41.6	0.000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0163071_14	phrog_6499	120.9	5.2e-36	transcriptional regulator	transcription regulation
UniRef90	UHGV-0163071_14	UniRef90_G9YL68	140.0	1.06e-39	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0163071_14	742738.HMPREF9460_00847	140.0	1.23999e-40	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0163071_14	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0163071_14	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0163071_14	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163071_17	PF21327	N/A	N/A	N/A	N/A
PHROG	UHGV-0163071_18	phrog_270	116.0	4.4e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163071_18	UniRef90_UPI001F170B82	183.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0163071_18	742738.HMPREF9460_00851	168.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0163071_18	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0163071_18	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0163071_18	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0163071_19	K02314	250.7	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0163071_19	phrog_19	219.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163071_19	UniRef90_A0A1Y3RCT6	285.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0163071_19	1007096.BAGW01000033_gene1616	277.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0163071_19	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0163071_19	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0163071_19	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0163071_19	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0163071_21	K03496	187.0	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0163071_21	phrog_164	146.5	1.79366e-43	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163071_21	UniRef90_UPI000318E277	298.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0163071_21	1007096.BAGW01000033_gene1614	288.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0163071_21	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0163071_21	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0163071_21	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0163071_22	K03497	77.2	3.5e-22	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0163071_22	phrog_27290	328.8	0	N/A	unknown function
UniRef90	UHGV-0163071_22	UniRef90_UPI0003130F10	295.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0163071_22	1007096.BAGW01000033_gene1613	295.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0163071_22	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0163071_22	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0163071_22	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163071_25	UniRef90_A0A8D9PDK2	52.4	0.00000108	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0163071_29	phrog_3584	74.1	2.2e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0163071_29	742738.HMPREF9460_04063	243.0	0	N/A	N/A
structural_annotation	UHGV-0163071_29	PF01446	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163071_30	UniRef90_UPI001D014F8E	72.8	0.00000000000000121	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0163071_30	1226322.HMPREF1545_00110	67.4	0.0000000000000352	Cysteine-rich KTR	N/A
Pfam	UHGV-0163071_30	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0163071_30	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0163071_31	phrog_119	70.6	2.2e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163071_31	UniRef90_G9YSB5	150.0	9.80909e-45	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0163071_31	1235792.C808_00081	83.6	2.81e-19	HNH nucleases	N/A
Pfam	UHGV-0163071_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0163071_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0163071_32	K07319	130.3	1.6e-38	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0163071_32	phrog_498	389.3	0	DNA methyltransferase	other
UniRef90	UHGV-0163071_32	UniRef90_A0A8A9IDH7	390.0	0	Nucleoid occlusion protein	N/A
eggNOG-mapper	UHGV-0163071_32	1423758.BN55_01455	384.0	0	DNA methylase	N/A
PADLOC	UHGV-0163071_32	MTase_II_00015	328.5	0	Type II methyltransferase	RM
Pfam	UHGV-0163071_32	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0163071_32	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0163071_32	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0163071_32	PF01555,PF02195,NF010253,TIGR00180,COG0863,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-0163071_33	phrog_5110	60.3	2.2e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0163071_33	UniRef90_UPI00195E8788	124.0	2.35e-33	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0163071_33	1265845.PWEIH_00610	53.1	0.00000144	Phage terminase, small subunit	N/A
Pfam	UHGV-0163071_33	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0163071_33	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0163071_34	phrog_9	242.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0163071_34	UniRef90_UPI0018737C02	902.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0163071_34	1235792.C808_00083	594.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0163071_34	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0163071_34	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0163071_34	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0163071_34	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0163071_35	phrog_12	116.1	1.1e-34	portal protein	head and packaging
UniRef90	UHGV-0163071_35	UniRef90_UPI0018755FA4	505.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0163071_35	610130.Closa_0742	289.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0163071_35	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0163071_35	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0163071_35	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0163071_35	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0163071_36	K01358	127.6	1.3e-37	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0163071_36	phrog_94	247.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0163071_36	UniRef90_A0A1Y4BT12	344.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0163071_36	349161.Dred_2605	293.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0163071_36	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0163071_36	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0163071_36	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0163071_37	phrog_10	128.5	8.1e-38	major head protein	head and packaging
UniRef90	UHGV-0163071_37	UniRef90_G9YSC0	694.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0163071_37	1235792.C808_00086	416.0	0	Phage capsid family	N/A
Pfam	UHGV-0163071_37	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0163071_37	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0163071_37	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0163071_37	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0163071_37	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0163071_38	phrog_749	67.5	1.8e-19	N/A	unknown function
UniRef90	UHGV-0163071_38	UniRef90_UPI001C0FB8A8	50.8	0.00000389	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0163071_38	349161.Dred_2603	78.2	1.56e-17	N/A	N/A
PHROG	UHGV-0163071_39	phrog_19734	116.3	1.9e-34	N/A	unknown function
UniRef90	UHGV-0163071_39	UniRef90_A0A6I7GNS7	122.0	1.92e-33	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0163071_39	349161.Dred_2602	89.7	1.82e-21	N/A	N/A
structural_annotation	UHGV-0163071_39	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0163071_40	999413.HMPREF1094_02005	82.4	7.89e-19	N/A	N/A
structural_annotation	UHGV-0163071_40	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0163071_41	phrog_5	45.5	0.0000000000015	tail completion or Neck1 protein	connector
UniRef90	UHGV-0163071_41	UniRef90_A0A1C6FG30	132.0	2.39e-36	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0163071_41	908340.HMPREF9406_2573	128.0	1.1e-35	N/A	N/A
structural_annotation	UHGV-0163071_41	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0163071_42	phrog_88	95.7	5.1e-28	major tail protein	tail
UniRef90	UHGV-0163071_42	UniRef90_A0A1C6CIL7	133.0	1.07e-34	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0163071_42	33035.JPJF01000039_gene278	71.6	0.0000000000011	N/A	N/A
NCBIFam	UHGV-0163071_42	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0163071_42	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0163071_45	phrog_3981	260.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0163071_45	UniRef90_A0A373CK98	297.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-0163071_45	1216932.CM240_0625	332.0	0	tape measure	N/A
COG	UHGV-0163071_45	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0163071_45	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0163071_46	phrog_33	62.4	1.2e-17	distal tail protein Dit	tail
UniRef90	UHGV-0163071_46	UniRef90_A0A173Z1X4	179.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0163071_46	536233.CLO_0897	90.5	2.93e-19	tail component	N/A
COG	UHGV-0163071_46	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0163071_46	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0163071_47	phrog_1067	289.0	0	minor head protein	head and packaging
UniRef90	UHGV-0163071_47	UniRef90_A0A316NPB5	387.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0163071_47	1123263.AUKY01000068_gene489	300.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0163071_47	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0163071_47	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0163071_47	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0163071_47	PF14594,PF13884,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163071_48	PF10651,PF04862,TIGR04362,COG5513	N/A	N/A	N/A	N/A