UHGV-0163575 (vOTU-028126)

Viral Genome: UHGV-0163575

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0163575
vOTU ID	vOTU-028126
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_502105
Associated BioSample	SAMN06110263
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.29 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.86
Jumbo phage	No

Genome content
Genome length (bp)	32,690
GC content	40.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	90%
Average CDS length (bps)	499.93
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.29)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0163575_1	K06909	264.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0163575_1	phrog_3717	148.9	2.66247e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0163575_1	UniRef90_A0A6L8SYJ6	784.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0163575_1	33035.JPJF01000106_gene3136	359.0	0	Terminase small subunit	N/A
Pfam	UHGV-0163575_1	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0163575_1	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0163575_1	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-0163575_4	phrog_10714	50.4	0.000000000000041	N/A	unknown function
structural_annotation	UHGV-0163575_6	PF09038	N/A	N/A	N/A	N/A
PHROG	UHGV-0163575_10	phrog_8684	93.9	6.2e-28	N/A	unknown function
UniRef90	UHGV-0163575_10	UniRef90_A0A174LJM6	147.0	4.34403e-43	YopX protein	N/A
eggNOG-mapper	UHGV-0163575_10	411470.RUMGNA_02199	89.7	6.21e-21	N/A	N/A
Pfam	UHGV-0163575_10	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0163575_10	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0163575_10	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0163575_11	phrog_20593	43.1	0.0000000000056	N/A	unknown function
eggNOG-mapper	UHGV-0163575_14	476272.RUMHYD_01751	48.5	0.00000639	N/A	N/A
AcrCatalog	UHGV-0163575_14	cluster_11670	43.5	0.0000000219	NA	N/A
PHROG	UHGV-0163575_17	phrog_15198	49.6	0.000000000000068	N/A	unknown function
UniRef90	UHGV-0163575_17	UniRef90_A0A373NR41	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-0163575_17	742723.HMPREF9477_00919	57.0	0.0000000212	N/A	N/A
Pfam	UHGV-0163575_17	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0163575_18	457412.RSAG_01159	247.0	0	N/A	N/A
structural_annotation	UHGV-0163575_18	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-0163575_19	phrog_4601	42.0	0.000000000003	N/A	unknown function
structural_annotation	UHGV-0163575_19	PF17888	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163575_20	COG4446	N/A	N/A	N/A	N/A
KOfam	UHGV-0163575_21	K07729	63.3	5.7e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0163575_21	phrog_8	55.0	0.0000000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-0163575_21	UniRef90_UPI001C10B5DE	57.8	0.00000000102	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0163575_21	1353537.TP2_06560	52.8	0.00000019	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0163575_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0163575_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0163575_21	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163575_23	UniRef90_A0A412ELN5	171.0	0	LexA_DNA_bind domain-containing protein	N/A
eggNOG-mapper	UHGV-0163575_23	994573.T472_0218310	51.6	0.0000012	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0163575_23	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0163575_23	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0163575_23	PF01726,COG0640	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0163575_24	596152.DesU5LDRAFT_1910	76.6	0.0000000000000147	N/A	N/A
structural_annotation	UHGV-0163575_24	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0163575_25	K02315	135.1	6.50001e-40	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0163575_25	phrog_50	134.6	9.2e-40	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163575_25	UniRef90_UPI001D06D025	478.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0163575_25	397291.C804_01604	254.0	0	Bacterial dnaA protein	N/A
Pfam	UHGV-0163575_25	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0163575_25	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0163575_25	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0163575_26	phrog_10469	108.4	3e-34	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163575_26	UniRef90_A0A174WT25	274.0	0	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-0163575_26	97138.C820_00775	183.0	0	DnaD domain protein	N/A
COG	UHGV-0163575_26	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0163575_26	PF10771,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0163575_27	phrog_244	63.5	4.9e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0163575_27	33035.JPJF01000122_gene2460	166.0	0	N/A	N/A
structural_annotation	UHGV-0163575_27	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163575_28	UniRef90_UPI00164A90AD	135.0	7.83e-39	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0163575_28	1235800.C819_02254	139.0	3.00004e-41	HNH nucleases	N/A
PHROG	UHGV-0163575_29	phrog_72	54.6	0.0000000000000017	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0163575_29	411490.ANACAC_00804	130.0	1.18e-35	N/A	N/A
structural_annotation	UHGV-0163575_29	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0163575_30	phrog_7838	143.7	1.3999e-42	exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0163575_30	742767.HMPREF9456_02052	182.0	0	N/A	N/A
structural_annotation	UHGV-0163575_30	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0163575_31	phrog_253	118.4	5.6e-35	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163575_31	UniRef90_UPI001C3A3B51	174.0	0	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0163575_31	411470.RUMGNA_02192	171.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-0163575_31	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0163575_31	PF05565	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163575_33	PF10922,TIGR03741	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163575_35	UniRef90_A0A395X9S5	149.0	1.4013e-45	Toxin HipA	N/A
eggNOG-mapper	UHGV-0163575_35	478749.BRYFOR_05417	85.5	5.17e-21	N/A	N/A
PHROG	UHGV-0163575_37	phrog_7964	283.1	0	N/A	unknown function
UniRef90	UHGV-0163575_37	UniRef90_A0A285PUH1	122.0	2.15e-30	Trimeric LpxA-like	N/A
eggNOG-mapper	UHGV-0163575_37	411470.RUMGNA_02189	82.8	2.7e-16	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0163575_37	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0163575_37	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0163575_37	MF_00523,NF040481,COG1043	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163575_39	COG1321	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163575_41	PF13601,MF_01819,NF038251,COG1846	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163575_44	UniRef90_A0A1M6M2C3	74.7	1.39e-16	DNA binding domain-containing protein, excisionase family	N/A
eggNOG-mapper	UHGV-0163575_44	610130.Closa_1362	70.5	0.00000000000000114	Helix-turn-helix domain	N/A
Pfam	UHGV-0163575_44	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0163575_44	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0163575_44	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0163575_45	K18830	63.4	3.5e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0163575_45	phrog_8	54.9	7.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0163575_45	UniRef90_R5GZQ0	133.0	5.56e-38	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0163575_45	748224.HMPREF9436_01444	129.0	6.52e-37	N/A	N/A
PADLOC	UHGV-0163575_45	retron_type_VI_hth_cluster2_1	49.9	0.000000000000015	N/A	Retron
Pfam	UHGV-0163575_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0163575_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0163575_45	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0163575_48	K07705	133.0	2.4e-39	lytT, lytR; two-component system, LytTR family, response regulator LytT	N/A
PHROG	UHGV-0163575_48	phrog_8810	127.5	1.1e-37	N/A	unknown function
UniRef90	UHGV-0163575_48	UniRef90_UPI001D0E4226	473.0	0	LytTR family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0163575_48	556261.HMPREF0240_03082	142.0	4.66e-39	response regulator	N/A
Pfam	UHGV-0163575_48	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-0163575_48	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-0163575_48	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
structural_annotation	UHGV-0163575_48	PF04397,PF00072,MF_00981,NF010684,COG3279	N/A	N/A	N/A	N/A
PHROG	UHGV-0163575_49	phrog_8545	67.4	2.1e-19	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0163575_49	UniRef90_UPI001C0EAFDF	263.0	0	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-0163575_49	1304866.K413DRAFT_0836	183.0	0	tRNA_anti-like	N/A
Pfam	UHGV-0163575_49	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-0163575_49	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
KOfam	UHGV-0163575_50	K14059	144.3	1.60028e-42	int; integrase	N/A
PHROG	UHGV-0163575_50	phrog_1	146.6	2.10195e-43	integrase	integration and excision
UniRef90	UHGV-0163575_50	UniRef90_A0A395X9D5	731.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0163575_50	1304866.K413DRAFT_1180	358.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0163575_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0163575_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0163575_50	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0163575_51	K07273	196.9	0	acm; lysozyme	N/A
PHROG	UHGV-0163575_51	phrog_6745	173.1	0	endolysin	lysis
UniRef90	UHGV-0163575_51	UniRef90_A0A412ERJ4	982.0	0	NlpC/P60 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0163575_51	457412.RSAG_00790	416.0	0	CHAP domain	N/A
Pfam	UHGV-0163575_51	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0163575_51	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0163575_51	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0163575_51	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0163575_51	PF01183,PF05382,NF003627,TIGR02219,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163575_52	UniRef90_UPI001D05E3B7	140.0	1.76999e-40	H-type lectin domain-containing protein	N/A
Pfam	UHGV-0163575_52	PF09458	N/A	N/A	H-type lectin domain	H_lectin
structural_annotation	UHGV-0163575_53	PF00386,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0163575_54	K08131	40.3	0.0000000000087	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-0163575_54	phrog_6616	521.7	0	tail protein	tail
UniRef90	UHGV-0163575_54	UniRef90_A0A395X7B3	1716.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0163575_54	33035.JPJF01000043_gene1002	235.0	0	N/A	N/A
Pfam	UHGV-0163575_54	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0163575_54	PF21470	N/A	N/A	Minor structural protein 5-like, C-terminal domain	BppU-like_C
structural_annotation	UHGV-0163575_54	PF05113,PF03921,PF13884,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163575_55	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0163575_56	phrog_1535	477.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0163575_56	UniRef90_A0A173R880	536.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0163575_56	476272.RUMHYD_01785	521.0	0	phage tail tape measure protein	N/A
COG	UHGV-0163575_56	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163575_56	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0163575_57	phrog_706	135.4	4.00001e-40	N/A	unknown function
UniRef90	UHGV-0163575_57	UniRef90_UPI001BAD00AD	212.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0163575_57	411459.RUMOBE_01383	345.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0163575_57	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0163575_57	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0163575_58	phrog_11299	71.8	1.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0163575_58	33035.JPJF01000106_gene3125	63.9	0.000000000054	N/A	N/A
structural_annotation	UHGV-0163575_58	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0163575_59	phrog_3099	65.4	1.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0163575_59	1304866.K413DRAFT_3043	95.5	6.02e-24	N/A	N/A