UHGV-0163928 (vOTU-111811)

Viral Genome: UHGV-0163928

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0163928
vOTU ID	vOTU-111811
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_543742
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.09 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9795
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.5
Jumbo phage	No

Genome content
Genome length (bp)	19,012
GC content	39.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	28
CDS density	93%
Average CDS length (bps)	628.82
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.09)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0163928_1	1120746.CCNL01000017_gene3200	49.7	0.00000238	ECF sigma factor	N/A
Pfam	UHGV-0163928_1	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
KOfam	UHGV-0163928_2	K22299	45.8	0.0000000000013	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0163928_2	phrog_5823	53.0	0.0000000000000054	transcriptional regulator	transcription regulation
UniRef90	UHGV-0163928_2	UniRef90_UPI0014794F3A	53.1	0.000000206	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0163928_2	1095743.HMPREF1054_1827	48.9	0.00000228	Helix-turn-helix domain	N/A
PADLOC	UHGV-0163928_2	retron_type_VI_hth_cluster2_1	45.5	0.0000000000022	N/A	Retron
Pfam	UHGV-0163928_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0163928_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0163928_3	phrog_5444	71.9	1.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0163928_3	1239384.K4MPU6_9CAUD	72.0	0.00000000000000117	N/A	N/A
PHROG	UHGV-0163928_4	phrog_7488	51.9	0.000000000000015	N/A	unknown function
Pfam	UHGV-0163928_4	PF18346	N/A	N/A	Mind bomb SH3 repeat domain	SH3_15
structural_annotation	UHGV-0163928_4	PF08962,PF07653,COG2388	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_6	phrog_924	44.2	0.000000000004	N/A	unknown function
UniRef90	UHGV-0163928_6	UniRef90_UPI001D0907EC	49.7	0.0000086	N/A	N/A
Pfam	UHGV-0163928_6	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0163928_6	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163928_7	PF14354,NF007260	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163928_8	UniRef90_R7EVG2	216.0	0	Thymidylate synthase ThyX	N/A
eggNOG-mapper	UHGV-0163928_8	1235793.C809_02394	129.0	1.33e-35	N/A	N/A
Pfam	UHGV-0163928_8	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0163928_8	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_10	phrog_36	40.5	0.000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-0163928_10	UniRef90_UPI001BB0884F	93.2	1.91e-21	N/A	N/A
eggNOG-mapper	UHGV-0163928_10	428125.CLOLEP_01806	120.0	5.83e-33	N/A	N/A
structural_annotation	UHGV-0163928_10	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0163928_11	K07451	52.9	0.0000000000000075	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0163928_11	phrog_119	84.7	1.2e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163928_11	UniRef90_A0A2V2GQ57	123.0	7.19e-35	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0163928_11	1226322.HMPREF1545_00111	120.0	1.41e-34	HNH nucleases	N/A
Pfam	UHGV-0163928_11	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0163928_11	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
COG	UHGV-0163928_12	COG0647	N/A	N/A	Ribonucleotide monophosphatase NagD, HAD superfamily	N/A
PHROG	UHGV-0163928_13	phrog_361	62.5	8.2e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0163928_13	UniRef90_A0A1C6H6I9	172.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0163928_13	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0163928_13	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0163928_13	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_14	phrog_9	289.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0163928_14	UniRef90_A0A0D8IV16	1042.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0163928_14	1226322.HMPREF1545_00113	867.0	0	Phage Terminase	N/A
Pfam	UHGV-0163928_14	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0163928_14	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0163928_14	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0163928_14	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_15	phrog_12	180.9	0	portal protein	head and packaging
UniRef90	UHGV-0163928_15	UniRef90_A0A0D8IVL0	638.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0163928_15	1226322.HMPREF1545_00114	524.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0163928_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0163928_15	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0163928_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0163928_15	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0163928_16	K06904	143.3	2.49992e-42	N/A	N/A
PHROG	UHGV-0163928_16	phrog_80	163.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0163928_16	UniRef90_A0A1C6H687	336.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0163928_16	1226322.HMPREF1545_00115	249.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0163928_16	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0163928_16	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0163928_16	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0163928_16	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_17	phrog_10	161.7	0	major head protein	head and packaging
UniRef90	UHGV-0163928_17	UniRef90_A0A1Y4R494	529.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0163928_17	1226322.HMPREF1545_00116	362.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0163928_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0163928_17	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0163928_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0163928_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0163928_17	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_18	phrog_2550	84.7	5.7e-25	N/A	unknown function
UniRef90	UHGV-0163928_18	UniRef90_UPI001E35E63D	77.8	7.4e-17	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0163928_18	1226322.HMPREF1545_00117	111.0	5.73e-31	N/A	N/A
structural_annotation	UHGV-0163928_18	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_19	phrog_1951	71.3	1.2e-20	head-tail adaptor	connector
UniRef90	UHGV-0163928_19	UniRef90_A0A2V2GSS5	91.7	7.25e-22	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0163928_19	1033738.CAEP01000018_gene3675	50.1	0.00000192	head-tail adaptor	N/A
COG	UHGV-0163928_19	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0163928_19	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_20	phrog_5	56.1	0.0000000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-0163928_20	UniRef90_A0A8J6PH82	109.0	2.37e-28	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0163928_20	411471.SUBVAR_05855	117.0	2e-32	N/A	N/A
Pfam	UHGV-0163928_20	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0163928_20	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_21	phrog_78	49.1	0.00000000000012	tail terminator	connector
UniRef90	UHGV-0163928_21	UniRef90_U2SBX3	100.0	2.3e-25	HTH merR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0163928_21	471875.RUMLAC_02244	103.0	1.75e-27	N/A	N/A
structural_annotation	UHGV-0163928_21	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_22	phrog_88	133.2	1.9e-39	major tail protein	tail
UniRef90	UHGV-0163928_22	UniRef90_R9N908	175.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-0163928_22	1235798.C817_02573	175.0	0	phage major tail protein, phi13 family	N/A
Pfam	UHGV-0163928_22	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0163928_22	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0163928_22	PF06488,PF18316,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_23	phrog_709	119.1	2.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-0163928_23	1410624.JNKK01000017_gene1983	139.0	3.80004e-41	N/A	N/A
structural_annotation	UHGV-0163928_23	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_24	phrog_3033	63.7	2.5e-18	N/A	unknown function
UniRef90	UHGV-0163928_24	UniRef90_A0A174UN01	63.2	0.00000000000407	Phage-like protein	N/A
eggNOG-mapper	UHGV-0163928_24	1341157.RF007C_02605	74.7	1.81e-17	N/A	N/A
PHROG	UHGV-0163928_25	phrog_5755	178.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0163928_25	UniRef90_UPI000C7C3162	477.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0163928_25	742738.HMPREF9460_04078	273.0	0	domain protein	N/A
NCBIFam	UHGV-0163928_25	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0163928_25	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0163928_25	PF20155,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_26	phrog_33	88.6	1.3e-25	distal tail protein Dit	tail
UniRef90	UHGV-0163928_26	UniRef90_A0A1C6H6D2	206.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0163928_26	1123263.AUKY01000068_gene490	144.0	5.18e-40	tail component	N/A
COG	UHGV-0163928_26	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0163928_26	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0163928_27	phrog_1067	427.3	0	minor head protein	head and packaging
UniRef90	UHGV-0163928_27	UniRef90_A0A1C6H6B4	545.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0163928_27	1160721.RBI_I01574	435.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0163928_27	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0163928_27	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0163928_27	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0163928_27	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163928_28	UniRef90_A0A412AXT4	110.0	2.4e-24	N/A	N/A
eggNOG-mapper	UHGV-0163928_28	33035.JPJF01000023_gene3223	69.3	0.0000000000312	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0163928_28	COG4675	N/A	N/A	Phage tail collar domain	N/A