UHGV-0164110 (vOTU-106204)

Viral Genome: UHGV-0164110

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0164110
vOTU ID	vOTU-106204
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_510554
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.43 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9781
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.17
Jumbo phage	No

Genome content
Genome length (bp)	14,788
GC content	35.36%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	19
CDS density	91%
Average CDS length (bps)	708.63
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0164110_3	K03111	108.7	9.3e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0164110_3	phrog_44	119.1	4.6e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164110_3	UniRef90_A0A412RR48	226.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0164110_3	397290.C810_01495	181.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0164110_3	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0164110_3	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0164110_3	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0164110_3	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0164110_3	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0164110_4	phrog_20593	45.0	0.0000000000017	N/A	unknown function
structural_annotation	UHGV-0164110_5	PF17548	N/A	N/A	N/A	N/A
Pfam	UHGV-0164110_6	PF17427	N/A	N/A	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
structural_annotation	UHGV-0164110_6	PF17427	N/A	N/A	N/A	N/A
KOfam	UHGV-0164110_8	K21237	430.4	0	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	N/A
PHROG	UHGV-0164110_8	phrog_1907	414.3	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164110_8	UniRef90_A0A843GX60	792.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0164110_8	10753.DPOL_BPNF	302.0	0	nucleotide binding	N/A
Pfam	UHGV-0164110_8	PF03175	N/A	N/A	DNA polymerase type B, organellar and viral	DNA_pol_B_2
structural_annotation	UHGV-0164110_8	PF03175,MF_04055,NF004415,COG0417	N/A	N/A	N/A	N/A
PHROG	UHGV-0164110_9	phrog_2150	183.8	0	terminase	head and packaging
UniRef90	UHGV-0164110_9	UniRef90_A0A843HRH6	431.0	0	Phage DNA encapsidation protein	N/A
eggNOG-mapper	UHGV-0164110_9	10756.PKG16_BPPH2	87.0	2.27e-16	Podovirus DNA encapsidation protein (Gp16)	N/A
Pfam	UHGV-0164110_9	PF05894	N/A	N/A	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
structural_annotation	UHGV-0164110_9	PF05894,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0164110_11	K20742	100.4	2.5e-29	ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]	N/A
PHROG	UHGV-0164110_11	phrog_329	77.6	1.4e-22	minor tail protein	tail
UniRef90	UHGV-0164110_11	UniRef90_A0A7U9S9Z2	122.0	7.26e-31	Peptidoglycan endopeptidase RipB	N/A
eggNOG-mapper	UHGV-0164110_11	1155718.KB891936_gene5601	73.2	0.00000000000121	PFAM NLP P60 protein	N/A
Pfam	UHGV-0164110_11	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0164110_11	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0164110_11	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0164110_11	PF00877,NF008096,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0164110_12	phrog_11037	74.0	2.3e-21	N/A	unknown function
UniRef90	UHGV-0164110_12	UniRef90_A0A0M6WKQ1	117.0	6.8e-30	Phage_lysozyme2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0164110_12	33035.JPJF01000093_gene2240	102.0	2.21e-23	NlpC/P60 family	N/A
Pfam	UHGV-0164110_12	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
COG	UHGV-0164110_12	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0164110_12	PF18013	N/A	N/A	N/A	N/A
PHROG	UHGV-0164110_14	phrog_2006	281.6	0	major head protein	head and packaging
UniRef90	UHGV-0164110_14	UniRef90_A0A843HGC7	470.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0164110_14	10753.B7SSM8_BPNF	214.0	0	viral capsid	N/A
structural_annotation	UHGV-0164110_14	PF19821,PF02368,MF_04119,NF033394,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-0164110_15	phrog_2248	136.5	0	tail protein	tail
UniRef90	UHGV-0164110_15	UniRef90_A0A843HKP3	367.0	0	Caud_tail_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0164110_15	12345.Q9FZW6_BPGA1	99.0	4.92e-19	N/A	N/A
Pfam	UHGV-0164110_15	PF16838	N/A	N/A	Caudoviral major tail protein N-terminus	Caud_tail_N
Pfam	UHGV-0164110_15	PF20934	N/A	N/A	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
structural_annotation	UHGV-0164110_15	PF20934,PF16838	N/A	N/A	N/A	N/A
PHROG	UHGV-0164110_16	phrog_2038	198.4	0	upper collar connector	connector
UniRef90	UHGV-0164110_16	UniRef90_P04332	164.0	2.8026e-45	Portal protein	N/A
eggNOG-mapper	UHGV-0164110_16	10753.B7SSN1_BPNF	168.0	0	Phage Connector (GP10)	N/A
Pfam	UHGV-0164110_16	PF05352	N/A	N/A	Phage Connector (GP10)	Phage_connector
structural_annotation	UHGV-0164110_16	PF05352,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0164110_17	phrog_3225	129.9	8.3e-39	adaptor Ad4	connector
UniRef90	UHGV-0164110_17	UniRef90_A0A3G3LYS5	89.7	3.63e-18	Lower collar protein	N/A
eggNOG-mapper	UHGV-0164110_17	10756.TUB11_BPPH2	68.6	0.0000000000824	N/A	N/A
structural_annotation	UHGV-0164110_19	PF04311,NF007819,COG2755	N/A	N/A	N/A	N/A