UHGV-0164791 (vOTU-028208)

Viral Genome: UHGV-0164791

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0164791
vOTU ID	vOTU-028208
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_548359
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.64 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.99
Jumbo phage	No

Genome content
Genome length (bp)	28,350
GC content	50.60%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	96%
Average CDS length (bps)	630.00
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.64)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0164791_1	K07727	61.7	2.1e-17	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0164791_1	UniRef90_A0A358LHG7	135.0	1.3e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0164791_1	97139.C824_03539	58.9	0.0000000000937	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0164791_1	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0164791_1	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0164791_1	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_2	phrog_289	102.9	4.2e-30	GTP-binding domain	other
UniRef90	UHGV-0164791_2	UniRef90_UPI001BB42FF0	105.0	5.05e-27	SLOG family protein	N/A
eggNOG-mapper	UHGV-0164791_2	195253.Syn6312_2892	113.0	6.61e-31	N/A	N/A
Pfam	UHGV-0164791_2	PF10686	N/A	N/A	YspA, cpYpsA-related SLOG family	YAcAr
COG	UHGV-0164791_2	COG0758	N/A	N/A	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	N/A
PHROG	UHGV-0164791_3	phrog_15956	43.9	0.00000000000084	tail assembly protein	tail
UniRef90	UHGV-0164791_3	UniRef90_A0A644YJG6	215.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0164791_3	742740.HMPREF9474_01683	138.0	1.51e-34	Glycosyl hydrolases family 25	N/A
COG	UHGV-0164791_3	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0164791_3	PF11910,MF_01354,NF033742	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_4	phrog_608	66.3	4.3e-19	holin	lysis
UniRef90	UHGV-0164791_4	UniRef90_R6I9L8	110.0	4.89e-29	Putative phage holin	N/A
Pfam	UHGV-0164791_4	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
NCBIFam	UHGV-0164791_4	TIGR01673.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0164791_4	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_5	phrog_1863	64.2	1.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0164791_5	1291050.JAGE01000001_gene2942	87.0	5.03e-21	N/A	N/A
PHROG	UHGV-0164791_6	phrog_27545	95.6	5.2e-28	N/A	unknown function
UniRef90	UHGV-0164791_6	UniRef90_A0A2V2GQB6	109.0	7.83e-28	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0164791_6	411471.SUBVAR_06976	103.0	1.75e-26	N/A	N/A
Pfam	UHGV-0164791_6	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
UniRef90	UHGV-0164791_9	UniRef90_R6HYD9	165.0	0	Collagen triple helix repeat protein	N/A
structural_annotation	UHGV-0164791_9	PF08481	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_11	phrog_1067	357.6	0	minor head protein	head and packaging
UniRef90	UHGV-0164791_11	UniRef90_UPI000CF99656	343.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0164791_11	1160721.RBI_I01574	315.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0164791_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0164791_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0164791_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0164791_11	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_12	phrog_33	68.1	2.3e-19	distal tail protein Dit	tail
UniRef90	UHGV-0164791_12	UniRef90_R6GVG8	137.0	1.78e-36	Phage putative tail component N-domain protein	N/A
eggNOG-mapper	UHGV-0164791_12	1444306.JFZC01000034_gene2623	147.0	5.21003e-41	tail component	N/A
COG	UHGV-0164791_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0164791_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_13	phrog_58	96.2	3.1e-34	tail length tape measure protein	tail
UniRef90	UHGV-0164791_13	UniRef90_A0A316QKN8	300.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0164791_13	994573.T472_0201810	280.0	0	tape measure	N/A
COG	UHGV-0164791_13	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-0164791_13	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0164791_14	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_15	phrog_88	77.9	1.3e-22	major tail protein	tail
UniRef90	UHGV-0164791_15	UniRef90_UPI001D07B441	136.0	4.17e-37	major tail protein	N/A
eggNOG-mapper	UHGV-0164791_15	411459.RUMOBE_00930	125.0	1.75e-33	N/A	N/A
NCBIFam	UHGV-0164791_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0164791_15	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_16	phrog_78	51.6	0.00000000000002	tail terminator	connector
eggNOG-mapper	UHGV-0164791_16	1238184.CM001792_gene2512	75.5	3.57e-16	N/A	N/A
structural_annotation	UHGV-0164791_16	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0164791_17	UniRef90_A0A174CK72	97.4	3.95e-23	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0164791_17	1195236.CTER_5108	86.3	1.33e-19	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0164791_17	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_18	phrog_1951	48.7	0.00000000000014	head-tail adaptor	connector
eggNOG-mapper	UHGV-0164791_18	457396.CSBG_01051	53.9	0.0000000567	head-tail adaptor	N/A
Pfam	UHGV-0164791_18	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
COG	UHGV-0164791_18	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
PHROG	UHGV-0164791_19	phrog_40	40.5	0.000000000043	head-tail adaptor Ad1	connector
UniRef90	UHGV-0164791_19	UniRef90_UPI0006544DF9	52.4	0.000000672	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0164791_19	1274524.BSONL12_06143	51.6	0.000000362	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0164791_19	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0164791_19	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0164791_19	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_20	phrog_10	161.4	0	major head protein	head and packaging
UniRef90	UHGV-0164791_20	UniRef90_UPI000C7BECD8	319.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0164791_20	1414720.CBYM010000002_gene572	239.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0164791_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0164791_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0164791_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0164791_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_21	phrog_16951	255.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0164791_21	246199.CUS_7602	189.0	0	N/A	N/A
structural_annotation	UHGV-0164791_21	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_22	phrog_12	270.5	0	portal protein	head and packaging
UniRef90	UHGV-0164791_22	UniRef90_UPI001C11FE4E	491.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0164791_22	634956.Geoth_0787	431.0	0	Phage portal protein	N/A
Pfam	UHGV-0164791_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0164791_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0164791_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0164791_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_23	phrog_9	330.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0164791_23	UniRef90_UPI000C7CE66A	718.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0164791_23	742738.HMPREF9460_04067	651.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0164791_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0164791_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0164791_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0164791_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_24	phrog_83	83.8	2.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0164791_24	UniRef90_UPI00067FA7FA	135.0	1.09e-37	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0164791_24	1567013.A0A0A7S0C4_9CAUD	132.0	2.33e-37	Phage terminase, small subunit	N/A
Pfam	UHGV-0164791_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0164791_24	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
structural_annotation	UHGV-0164791_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0164791_25	K07451	48.7	0.00000000000015	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0164791_25	phrog_144	107.0	1.6e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164791_25	UniRef90_UPI0006D7C695	94.4	3.45e-22	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0164791_25	1508644.SFBmNL_01550	88.2	9.02e-21	HNH endonuclease	N/A
Pfam	UHGV-0164791_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0164791_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0164791_25	PF05766	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_27	phrog_36	50.6	0.000000000000029	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0164791_27	1095750.HMPREF9970_0179	53.1	0.000000608	N/A	N/A
Pfam	UHGV-0164791_27	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0164791_27	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0164791_28	K01160	51.2	0.000000000000035	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0164791_28	phrog_34	55.9	8.8e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164791_28	UniRef90_A0A498CNH4	143.0	9.32004e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0164791_28	1567011.A0A0A7S133_9VIRU	52.0	0.00000122	Endodeoxyribonuclease RusA	N/A
structural_annotation	UHGV-0164791_28	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0164791_30	K01520	141.0	9.80068e-42	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0164791_30	phrog_135	124.8	5.5e-37	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164791_30	UniRef90_UPI00164A78A3	194.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0164791_30	1282887.AUJG01000016_gene1113	154.0	2.8026e-45	N/A	N/A
Pfam	UHGV-0164791_30	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0164791_30	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0164791_30	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0164791_30	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_32	phrog_4880	203.9	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164791_32	UniRef90_R6WQA7	246.0	0	DnaD and phage-associated domain protein	N/A
eggNOG-mapper	UHGV-0164791_32	1035189.HMPREF9954_1960	183.0	0	Replication initiation and membrane attachment	N/A
Pfam	UHGV-0164791_32	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0164791_32	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0164791_32	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0164791_32	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_33	phrog_2113	45.1	0.0000000000014	N/A	unknown function
UniRef90	UHGV-0164791_33	UniRef90_A0A847W0Y2	55.1	0.000000122	HTH domain-containing protein	N/A
eggNOG-mapper	UHGV-0164791_33	1160721.RBI_II00485	53.9	0.0000000604	N/A	N/A
structural_annotation	UHGV-0164791_33	PF21715	N/A	N/A	N/A	N/A
KOfam	UHGV-0164791_34	K03111	153.2	2.8026e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0164791_34	phrog_44	148.7	3.22299e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164791_34	UniRef90_R6I6X7	185.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0164791_34	445972.ANACOL_01827	154.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0164791_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0164791_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0164791_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0164791_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0164791_34	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_36	phrog_7566	89.3	2.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0164791_36	1007096.BAGW01000031_gene114	105.0	4.48e-28	N/A	N/A
PHROG	UHGV-0164791_37	phrog_72	64.9	9.7e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164791_37	UniRef90_A0A8D9PDS2	174.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0164791_37	445972.ANACOL_01825	126.0	1.6e-34	N/A	N/A
structural_annotation	UHGV-0164791_37	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_38	phrog_7838	143.6	1.3999e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164791_38	UniRef90_A0A8D9UGW3	183.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0164791_38	742767.HMPREF9456_02052	172.0	0	N/A	N/A
structural_annotation	UHGV-0164791_38	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_39	phrog_253	128.3	5.3e-38	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164791_39	UniRef90_A0A410PZR1	97.8	9.78e-23	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0164791_39	699218.HMPREF0889_0310	77.8	7.51e-16	Siphovirus Gp157	N/A
Pfam	UHGV-0164791_39	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0164791_39	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0164791_40	phrog_14214	41.0	0.000000000028	N/A	unknown function
UniRef90	UHGV-0164791_40	UniRef90_UPI0011DF7AAD	48.1	0.0000041	phosphatase	N/A
KOfam	UHGV-0164791_42	K02338	240.6	0	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	N/A
PHROG	UHGV-0164791_42	phrog_947	167.6	0	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164791_42	UniRef90_A0A358WYE5	170.0	0	Beta sliding clamp	N/A
eggNOG-mapper	UHGV-0164791_42	1105031.HMPREF1141_2306	150.0	1.49e-39	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	N/A
Pfam	UHGV-0164791_42	PF00712	N/A	N/A	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
Pfam	UHGV-0164791_42	PF02767	N/A	N/A	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
Pfam	UHGV-0164791_42	PF02768	N/A	N/A	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
NCBIFam	UHGV-0164791_42	TIGR00663.1	N/A	N/A	DNA polymerase III subunit beta	N/A
COG	UHGV-0164791_42	COG0592	N/A	N/A	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	N/A
structural_annotation	UHGV-0164791_42	PF02768,PF00712,PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
KOfam	UHGV-0164791_43	K07319	85.6	5e-25	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0164791_43	phrog_67	95.0	7.1e-28	DNA methyltransferase	other
UniRef90	UHGV-0164791_43	UniRef90_R6N9D9	578.0	0	DNA methylase family protein	N/A
eggNOG-mapper	UHGV-0164791_43	1298920.KI911353_gene2709	600.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0164791_43	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0164791_43	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0164791_43	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A