UHGV-0164792 (vOTU-111671)

Viral Genome: UHGV-0164792

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0164792
vOTU ID	vOTU-111671
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_548354
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.89 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9727
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.38
Jumbo phage	No

Genome content
Genome length (bp)	35,353
GC content	43.70%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	93%
Average CDS length (bps)	618.68
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0164792_1	K06400	249.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0164792_1	phrog_95	275.9	0	integrase	integration and excision
UniRef90	UHGV-0164792_1	UniRef90_R7MZ39	660.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0164792_1	1256908.HMPREF0373_00206	642.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0164792_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0164792_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0164792_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0164792_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0164792_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0164792_2	K15773	54.1	0.0000000000000037	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0164792_2	phrog_29047	54.4	0.0000000000000027	N/A	unknown function
UniRef90	UHGV-0164792_2	UniRef90_A0A350VV95	122.0	3.16e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0164792_2	138119.DSY3664	64.7	0.000000000000952	sequence-specific DNA binding	N/A
Pfam	UHGV-0164792_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0164792_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0164792_4	phrog_2158	215.7	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0164792_4	UniRef90_A0A416N3E5	328.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-0164792_4	1235792.C808_03102	312.0	0	Abi-like protein	N/A
PADLOC	UHGV-0164792_4	AbiD	149.1	5.74532e-44	AbiD	Abi
Pfam	UHGV-0164792_4	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0164792_4	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0164792_4	PF07751,COG4823	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_5	phrog_87	90.7	1.1e-26	metallo-protease	other
UniRef90	UHGV-0164792_5	UniRef90_A0A350VV99	271.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0164792_5	397288.C806_00132	160.0	0	Zn peptidase	N/A
Pfam	UHGV-0164792_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0164792_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0164792_5	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_6	phrog_2695	393.9	0	N/A	unknown function
UniRef90	UHGV-0164792_6	UniRef90_UPI00073F50E0	634.0	0	SIR2 family protein	N/A
eggNOG-mapper	UHGV-0164792_6	1504823.CCMM01000008_gene1082	521.0	0	NAD+ binding	N/A
PADLOC	UHGV-0164792_6	Sirtuin_Blast2	252.8	0	N/A	N/A
Pfam	UHGV-0164792_6	PF13289	N/A	N/A	SIR2-like domain	SIR2_2
COG	UHGV-0164792_6	COG0846	N/A	N/A	NAD-dependent protein deacetylase, SIR2 family	N/A
structural_annotation	UHGV-0164792_6	PF13289	N/A	N/A	N/A	N/A
KOfam	UHGV-0164792_7	K18830	63.9	3.4e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0164792_7	phrog_8	53.9	0.0000000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-0164792_7	UniRef90_A0A350VVA1	189.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0164792_7	887325.HMPREF0381_0352	125.0	7.41e-35	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0164792_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0164792_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0164792_7	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0164792_8	K18830	58.8	1.3e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0164792_8	phrog_8	48.1	0.00000000000007	transcriptional regulator	transcription regulation
UniRef90	UHGV-0164792_8	UniRef90_A0A350VVA2	204.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0164792_8	1095750.HMPREF9970_1686	122.0	1.61e-34	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0164792_8	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0164792_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0164792_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0164792_11	PF17950	N/A	N/A	N/A	N/A
KOfam	UHGV-0164792_12	K22300	44.5	0.0000000000031	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0164792_12	phrog_3	42.2	0.000000000032	transcriptional repressor	transcription regulation
UniRef90	UHGV-0164792_12	UniRef90_A0A7U9NK71	68.9	0.0000000000000569	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0164792_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0164792_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0164792_12	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0164792_13	1232443.BAIA02000079_gene64	49.3	0.000000172	N/A	N/A
PHROG	UHGV-0164792_16	phrog_32437	77.7	1.6e-22	N/A	unknown function
UniRef90	UHGV-0164792_16	UniRef90_A0A350VVB0	266.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0164792_16	391009.Tmel_1794	59.3	0.0000000199	transglycosylase	N/A
Pfam	UHGV-0164792_16	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0164792_16	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0164792_16	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_18	phrog_3584	273.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164792_18	UniRef90_A0A4P8IFK4	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-0164792_18	411459.RUMOBE_01756	352.0	0	COG NOG14934 non supervised orthologous group	N/A
structural_annotation	UHGV-0164792_18	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_19	phrog_824	149.8	7.00649e-45	N/A	unknown function
UniRef90	UHGV-0164792_19	UniRef90_A0A2N0K9N3	200.0	0	Nuclease	N/A
eggNOG-mapper	UHGV-0164792_19	742741.HMPREF9475_00407	205.0	0	VRR_NUC	N/A
Pfam	UHGV-0164792_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0164792_21	K03496	172.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0164792_21	phrog_164	150.2	1.54143e-44	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164792_21	UniRef90_A0A3R6XV13	373.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0164792_21	411459.RUMOBE_01750	356.0	0	CobQ CobB MinD ParA nucleotide binding domain protein	N/A
Pfam	UHGV-0164792_21	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0164792_21	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0164792_21	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0164792_22	K03497	60.2	2.9e-17	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0164792_22	phrog_15982	573.1	0	N/A	unknown function
UniRef90	UHGV-0164792_22	UniRef90_A0A7X5CGW3	454.0	0	N/A	N/A
eggNOG-mapper	UHGV-0164792_22	742741.HMPREF9475_00414	453.0	0	N/A	N/A
Pfam	UHGV-0164792_22	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0164792_22	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-0164792_22	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0164792_22	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-0164792_23	K03469	58.5	1.6e-16	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0164792_23	phrog_531	57.9	2e-16	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164792_23	UniRef90_A0A350VVB3	95.5	2.71e-22	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0164792_23	1082931.KKY_554	63.9	0.000000000045	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0164792_23	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0164792_23	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0164792_23	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-0164792_24	K03111	60.5	4.2e-17	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0164792_24	phrog_26861	121.0	5.4e-36	N/A	unknown function
UniRef90	UHGV-0164792_24	UniRef90_R7MAT7	204.0	0	Single-strand binding protein/Primosomal replication protein n	N/A
eggNOG-mapper	UHGV-0164792_24	1232452.BAIB02000009_gene1990	197.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0164792_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0164792_24	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0164792_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0164792_24	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_25	phrog_17690	46.7	0.00000000000049	N/A	unknown function
eggNOG-mapper	UHGV-0164792_25	33035.JPJF01000123_gene2433	50.4	0.00000517	N/A	N/A
structural_annotation	UHGV-0164792_26	PF18024,TIGR04381	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_28	phrog_15198	45.2	0.0000000000017	N/A	unknown function
UniRef90	UHGV-0164792_28	UniRef90_A0A1Q6KA59	115.0	1.42e-31	N/A	N/A
eggNOG-mapper	UHGV-0164792_28	478749.BRYFOR_07594	91.3	7.15e-21	N/A	N/A
Pfam	UHGV-0164792_28	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0164792_30	phrog_2776	67.2	2.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0164792_30	411490.ANACAC_00794	153.0	0	N/A	N/A
KOfam	UHGV-0164792_33	K03111	122.8	4.7e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0164792_33	phrog_44	123.9	1.4e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0164792_33	UniRef90_R7BHP7	224.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0164792_33	742740.HMPREF9474_02547	223.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0164792_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0164792_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0164792_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0164792_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0164792_33	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_35	phrog_309	161.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0164792_35	UniRef90_A0A417T189	159.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0164792_35	411470.RUMGNA_02210	152.0	2.38221e-44	transposase activity	N/A
Pfam	UHGV-0164792_35	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0164792_35	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0164792_35	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0164792_36	K06909	121.2	1.3e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0164792_36	phrog_2	155.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0164792_36	UniRef90_A0A350VVC2	841.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0164792_36	1120998.AUFC01000030_gene2231	380.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0164792_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0164792_36	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0164792_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0164792_36	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_37	phrog_533	201.7	0	portal protein	head and packaging
UniRef90	UHGV-0164792_37	UniRef90_A0A6L5YLX0	469.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0164792_37	645991.Sgly_0336	150.0	2.21e-37	N/A	N/A
structural_annotation	UHGV-0164792_37	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_38	phrog_581	216.3	0	minor head protein	head and packaging
UniRef90	UHGV-0164792_38	UniRef90_UPI00164C8416	236.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0164792_38	1226322.HMPREF1545_00046	127.0	1.79e-28	Phage minor capsid protein 2	N/A
Pfam	UHGV-0164792_38	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0164792_38	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0164792_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0164792_38	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_40	phrog_194	83.7	3.1e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0164792_40	UniRef90_A0A174GWW4	192.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0164792_40	742765.HMPREF9457_02126	106.0	3.98e-26	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0164792_40	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0164792_40	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_41	phrog_212	268.7	0	major head protein	head and packaging
UniRef90	UHGV-0164792_41	UniRef90_A0A350VVC8	575.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0164792_41	1232449.BAHV02000010_gene2714	355.0	0	N/A	N/A
structural_annotation	UHGV-0164792_41	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_42	phrog_541	62.7	6.4e-18	head-tail adaptor	connector
PHROG	UHGV-0164792_43	phrog_3366	86.4	3.6e-25	N/A	unknown function
Pfam	UHGV-0164792_43	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0164792_43	PF20536,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_44	phrog_556	66.4	4.1e-19	minor head protein	head and packaging
UniRef90	UHGV-0164792_44	UniRef90_UPI00067E9657	106.0	1.03e-26	minor capsid protein	N/A
eggNOG-mapper	UHGV-0164792_44	1235790.C805_00048	67.0	0.000000000008	N/A	N/A
Pfam	UHGV-0164792_44	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0164792_44	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_45	phrog_3266	83.5	2.2e-24	tail completion	connector
eggNOG-mapper	UHGV-0164792_45	573061.Clocel_3537	65.1	0.0000000000166	N/A	N/A
structural_annotation	UHGV-0164792_45	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_46	phrog_3099	142.9	1.69978e-42	N/A	unknown function
eggNOG-mapper	UHGV-0164792_46	1235790.C805_00082	138.0	2.4e-39	N/A	N/A
structural_annotation	UHGV-0164792_46	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0164792_47	1235790.C805_00083	74.7	0.00000000000000418	N/A	N/A
PHROG	UHGV-0164792_48	phrog_706	118.7	4.4e-35	N/A	unknown function
UniRef90	UHGV-0164792_48	UniRef90_R7N4A5	133.0	5.02e-36	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0164792_48	1235790.C805_00084	134.0	4.72e-37	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0164792_48	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0164792_48	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_49	phrog_1535	103.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0164792_49	UniRef90_A0A810PX76	92.0	0.00000000000000177	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0164792_49	1304866.K413DRAFT_3046	98.6	4.29e-18	N/A	N/A
COG	UHGV-0164792_49	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0164792_50	phrog_1194	72.5	5.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0164792_50	1235790.C805_00088	203.0	0	N/A	N/A
Pfam	UHGV-0164792_50	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0164792_50	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0164792_51	phrog_18190	495.6	0	N/A	unknown function
UniRef90	UHGV-0164792_51	UniRef90_R7BGL9	456.0	0	N/A	N/A
eggNOG-mapper	UHGV-0164792_51	1235790.C805_00089	360.0	0	N/A	N/A
Pfam	UHGV-0164792_51	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0164792_51	PF05113,PF13884,NF033848,COG3500	N/A	N/A	N/A	N/A