UHGV-0165388 (vOTU-080562)

Viral Genome: UHGV-0165388

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0165388
vOTU ID	vOTU-080562
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_525297
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.971
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.55
Jumbo phage	No

Genome content
Genome length (bp)	36,116
GC content	48.81%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	89%
Average CDS length (bps)	564.21
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0165388_1	K01356	63.2	6.2e-18	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0165388_1	phrog_4	64.7	2.4e-18	transcriptional repressor	transcription regulation
UniRef90	UHGV-0165388_1	UniRef90_UPI0013911AF0	66.6	0.0000000000104	S24 family peptidase	N/A
eggNOG-mapper	UHGV-0165388_1	268407.PWYN_03190	88.6	1.27e-20	Peptidase S24-like	N/A
Pfam	UHGV-0165388_1	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0165388_1	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0165388_3	K01160	57.5	3.9e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0165388_3	phrog_140	79.6	5.4e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0165388_3	UniRef90_R7BNY6	176.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0165388_3	479437.Elen_2598	128.0	2.44e-36	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0165388_3	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0165388_3	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0165388_3	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0165388_4	1235794.C811_01351	70.1	0.00000000000216	N/A	N/A
KOfam	UHGV-0165388_6	K03497	80.4	3.8e-23	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0165388_6	phrog_18056	145.8	2.70451e-43	ParB-like partition nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0165388_6	UniRef90_UPI000DF6B6AE	107.0	1.68e-23	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0165388_6	1125712.HMPREF1316_2383	95.5	6.22e-20	ParB-like nuclease domain	N/A
Pfam	UHGV-0165388_6	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0165388_6	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-0165388_8	phrog_561	105.9	4.2e-32	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0165388_8	UniRef90_UPI00123B0CBF	182.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0165388_8	1504822.CCNO01000013_gene307	187.0	0	N/A	N/A
KOfam	UHGV-0165388_10	K03111	116.6	3.7e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0165388_10	phrog_44	113.7	1.8e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0165388_10	UniRef90_A0A415BES7	164.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0165388_10	471855.Shel_27910	159.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0165388_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0165388_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0165388_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0165388_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0165388_10	PF00436,MF_00984,NF005406,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_11	phrog_428	129.7	2.8e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0165388_11	UniRef90_R7BP06	202.0	0	Putative phage replication protein	N/A
eggNOG-mapper	UHGV-0165388_11	1295642.H839_08149	105.0	3.26e-24	Replication initiation and membrane attachment	N/A
Pfam	UHGV-0165388_11	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0165388_11	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0165388_11	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0165388_11	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0165388_11	PF09524,PF19808,TIGR02220	N/A	N/A	N/A	N/A
KOfam	UHGV-0165388_12	K02315	110.1	2.5e-32	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0165388_12	phrog_50	92.0	6.2e-27	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0165388_12	UniRef90_A0A369LPZ9	105.0	1.96e-24	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0165388_12	479437.Elen_2606	104.0	5.5e-25	IstB-like ATP binding protein	N/A
Pfam	UHGV-0165388_12	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0165388_12	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0165388_12	PF01695,MF_01158,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_15	phrog_428	129.0	5.3e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0165388_15	UniRef90_R7BP06	146.0	1.56e-40	Putative phage replication protein	N/A
eggNOG-mapper	UHGV-0165388_15	1295642.H839_08149	105.0	7.5e-25	Replication initiation and membrane attachment	N/A
Pfam	UHGV-0165388_15	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0165388_15	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0165388_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0165388_16	K02315	110.1	2.5e-32	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0165388_16	phrog_50	92.0	6.2e-27	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0165388_16	UniRef90_A0A369LPZ9	105.0	1.96e-24	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0165388_16	479437.Elen_2606	104.0	5.5e-25	IstB-like ATP binding protein	N/A
Pfam	UHGV-0165388_16	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0165388_16	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0165388_16	PF01695,MF_01158,NF005992,COG1484	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0165388_18	521003.COLINT_02330	89.0	1.22e-18	N/A	N/A
structural_annotation	UHGV-0165388_18	PF09465,PF08207,MF_00646,TIGR03318	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_21	phrog_21525	44.1	0.00000000000083	N/A	unknown function
eggNOG-mapper	UHGV-0165388_24	633147.Olsu_1237	61.6	0.00000000000424	N/A	N/A
KOfam	UHGV-0165388_27	K07741	110.3	4.1e-32	antB; anti-repressor protein	N/A
PHROG	UHGV-0165388_27	phrog_130	170.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0165388_27	UniRef90_R7CC75	260.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-0165388_27	1504822.CCNO01000015_gene589	247.0	0	SOS response	N/A
Pfam	UHGV-0165388_27	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0165388_27	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0165388_27	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0165388_27	PF03374,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_29	phrog_620	132.2	3.2e-39	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0165388_29	UniRef90_A0A7X5DGZ5	157.0	1.4013e-45	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0165388_29	469378.Ccur_02830	139.0	5.98e-37	DNA binding	N/A
PADLOC	UHGV-0165388_29	MTase_II_00015	92.3	8.7e-27	Type II methyltransferase	RM
Pfam	UHGV-0165388_29	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0165388_29	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0165388_29	PF02195,MF_02015,TIGR00180,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_30	phrog_887	86.2	3.9e-25	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
structural_annotation	UHGV-0165388_30	PF00218,MF_01634,TIGR00449,COG3605	N/A	N/A	N/A	N/A
KOfam	UHGV-0165388_31	K09125	169.1	0	yhhQ; queuosine precursor transporter	N/A
PHROG	UHGV-0165388_31	phrog_4899	83.7	2.9e-24	N/A	unknown function
UniRef90	UHGV-0165388_31	UniRef90_A0A1Y3UFS7	235.0	0	Probable queuosine precursor transporter	N/A
eggNOG-mapper	UHGV-0165388_31	420247.Msm_0646	168.0	0	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	N/A
Pfam	UHGV-0165388_31	PF02592	N/A	N/A	Putative vitamin uptake transporter	Vut_1
NCBIFam	UHGV-0165388_31	TIGR00697.1	N/A	N/A	queuosine precursor transporter	N/A
COG	UHGV-0165388_31	COG1738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0165388_31	PF02592,MF_02088,TIGR00697,COG1738	N/A	N/A	N/A	N/A
KOfam	UHGV-0165388_32	K06909	274.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0165388_32	phrog_3717	115.9	2.8e-34	terminase large subunit	head and packaging
UniRef90	UHGV-0165388_32	UniRef90_A0A1Y4G845	539.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0165388_32	1273103.NM10_06806	276.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0165388_32	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-0165388_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0165388_32	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0165388_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-0165388_33	phrog_533	204.3	0	portal protein	head and packaging
UniRef90	UHGV-0165388_33	UniRef90_UPI00189938B4	227.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0165388_33	471855.Shel_03460	221.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0165388_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_34	phrog_581	171.1	0	minor head protein	head and packaging
UniRef90	UHGV-0165388_34	UniRef90_A0A4S2EQ61	222.0	0	Ntox50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0165388_34	1111121.HMPREF1247_0842	170.0	5.1848e-43	Phage minor capsid protein 2	N/A
Pfam	UHGV-0165388_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0165388_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0165388_34	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_36	phrog_3675	70.3	2e-20	N/A	unknown function
UniRef90	UHGV-0165388_36	UniRef90_UPI001651696B	82.8	3.69e-18	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0165388_36	469378.Ccur_02770	103.0	5.33e-27	YjcQ protein	N/A
Pfam	UHGV-0165388_36	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0165388_36	PF09639,TIGR04176,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_37	phrog_194	61.9	1.1e-17	head scaffolding protein	head and packaging
Pfam	UHGV-0165388_37	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0165388_37	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_38	phrog_544	187.6	0	major head protein	head and packaging
UniRef90	UHGV-0165388_38	UniRef90_A0A810PZM2	296.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0165388_38	1347392.CCEZ01000005_gene1236	227.0	0	N/A	N/A
structural_annotation	UHGV-0165388_38	PF06673,PF13629,MF_04119,TIGR04387,NF005261,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0165388_39	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_40	phrog_556	68.3	1.1e-19	minor head protein	head and packaging
eggNOG-mapper	UHGV-0165388_40	1134413.ANNK01000120_gene2022	50.4	0.00000266	Minor capsid protein	N/A
Pfam	UHGV-0165388_40	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0165388_40	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0165388_41	PF20765,COG5003	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0165388_42	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_44	phrog_706	120.1	1.7e-35	N/A	unknown function
UniRef90	UHGV-0165388_44	UniRef90_UPI0009B9DB3F	130.0	2.02e-34	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0165388_44	658655.HMPREF0988_02553	62.8	0.00000000161	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0165388_44	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0165388_44	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_45	phrog_1686	202.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0165388_45	UniRef90_A0A6M5FGH0	227.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0165388_45	401473.BDP_1472	201.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0165388_45	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0165388_45	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0165388_45	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0165388_45	PF20155,TIGR02675,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0165388_46	658655.HMPREF0988_02551	96.3	1.42e-20	N/A	N/A
structural_annotation	UHGV-0165388_46	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_47	phrog_538	149.3	1.54143e-44	minor tail protein	tail
UniRef90	UHGV-0165388_47	UniRef90_A0A1C5PP83	225.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0165388_47	1256908.HMPREF0373_00466	219.0	0	N/A	N/A
structural_annotation	UHGV-0165388_47	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_48	phrog_13141	156.7	0	N/A	unknown function
UniRef90	UHGV-0165388_48	UniRef90_A0A7K3I4P1	123.0	6.23e-30	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0165388_48	78345.BMERY_0866	115.0	1.85e-27	N/A	N/A
structural_annotation	UHGV-0165388_48	PF20747,PF08931	N/A	N/A	N/A	N/A
KOfam	UHGV-0165388_49	K07776	205.9	0	regX3; two-component system, OmpR family, response regulator RegX3	N/A
PHROG	UHGV-0165388_49	phrog_731	184.8	0	N/A	unknown function
UniRef90	UHGV-0165388_49	UniRef90_A0A838ELM6	150.0	1.87998e-41	Response regulator transcription factor	N/A
eggNOG-mapper	UHGV-0165388_49	485913.Krac_2380	141.0	6.01e-39	Two component transcriptional regulator, winged helix family	N/A
Pfam	UHGV-0165388_49	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-0165388_49	PF00486	N/A	N/A	Transcriptional regulatory protein, C terminal	Trans_reg_C
COG	UHGV-0165388_49	COG0745	N/A	N/A	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	N/A
structural_annotation	UHGV-0165388_49	PF00072,PF00486,MF_00981,NF000401,COG0745	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_50	phrog_21718	46.2	0.00000000000058	N/A	unknown function
PHROG	UHGV-0165388_51	phrog_16490	57.8	9.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-0165388_51	641112.ACOK01000103_gene525	82.0	3.01e-16	N/A	N/A
structural_annotation	UHGV-0165388_52	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_54	phrog_32635	237.7	0	N/A	unknown function
UniRef90	UHGV-0165388_54	UniRef90_A0A1Y4G570	304.0	0	Amidase_5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0165388_54	97139.C824_03356	248.0	0	N/A	N/A
structural_annotation	UHGV-0165388_54	PF05382	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_55	phrog_10091	90.8	1.4e-26	holin	lysis
UniRef90	UHGV-0165388_55	UniRef90_UPI00093188B6	110.0	4.88e-30	phage holin	N/A
eggNOG-mapper	UHGV-0165388_55	445975.COLSTE_02144	108.0	4.47e-30	Bacteriophage holin	N/A
Pfam	UHGV-0165388_55	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0165388_55	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0165388_55	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0165388_55	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0165388_56	phrog_4105	58.0	1.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0165388_56	1437605.BACT_0481	76.6	2.8e-17	N/A	N/A