UHGV-0165524 (vOTU-028244)

Viral Genome: UHGV-0165524

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0165524
vOTU ID	vOTU-028244
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_545281
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.62 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9556
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.03
Jumbo phage	No

Genome content
Genome length (bp)	25,349
GC content	38.75%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	34
CDS density	92%
Average CDS length (bps)	684.97
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.62)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0165524_1	K07273	74.2	2.5e-21	acm; lysozyme	N/A
PHROG	UHGV-0165524_1	phrog_6745	64.0	2.3e-18	endolysin	lysis
UniRef90	UHGV-0165524_1	UniRef90_E6JZS3	70.9	0.0000000000000492	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0165524_1	1111121.HMPREF1247_1247	80.9	2.14e-17	PFAM glycoside hydrolase, family 10	N/A
Pfam	UHGV-0165524_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0165524_1	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
PHROG	UHGV-0165524_2	phrog_13256	75.7	3.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0165524_2	1160721.RBI_I01912	65.9	0.0000000000000936	N/A	N/A
PHROG	UHGV-0165524_3	phrog_1863	66.5	2.5e-19	N/A	unknown function
UniRef90	UHGV-0165524_3	UniRef90_UPI001F223E8B	67.4	0.000000000000288	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0165524_3	1232453.BAIF02000059_gene1610	73.2	1.99e-16	N/A	N/A
PHROG	UHGV-0165524_5	phrog_1067	201.9	0	minor head protein	head and packaging
UniRef90	UHGV-0165524_5	UniRef90_A0A352DNT6	231.0	0	Prophage_tailD1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0165524_5	272562.CA_C0063	167.0	1.12006e-41	Prophage endopeptidase tail	N/A
Pfam	UHGV-0165524_5	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0165524_5	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0165524_5	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0165524_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0165524_5	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
COG	UHGV-0165524_6	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0165524_7	phrog_33	77.3	3.5e-22	distal tail protein Dit	tail
UniRef90	UHGV-0165524_7	UniRef90_A0A0X8V9V4	141.0	4.8e-38	Phage tail protein	N/A
eggNOG-mapper	UHGV-0165524_7	1262449.CP6013_2095	115.0	5.85e-29	tail component	N/A
COG	UHGV-0165524_7	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0165524_7	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0165524_8	phrog_1533	371.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0165524_8	UniRef90_A0A1M5PWE6	222.0	0	Phage tail tape measure protein, TP901 family, core region	N/A
eggNOG-mapper	UHGV-0165524_8	1033737.CAEV01000029_gene286	327.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0165524_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0165524_8	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0165524_8	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0165524_9	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0165524_10	phrog_88	90.6	1.2e-26	major tail protein	tail
UniRef90	UHGV-0165524_10	UniRef90_A4J7Q7	190.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0165524_10	349161.Dred_2600	190.0	0	N/A	N/A
NCBIFam	UHGV-0165524_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
UniRef90	UHGV-0165524_11	UniRef90_A4J7Q8	82.8	1.27e-17	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0165524_11	349161.Dred_2601	82.8	2.12e-18	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0165524_11	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0165524_12	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0165524_13	phrog_19734	101.4	7.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0165524_13	349161.Dred_2602	89.7	1.15e-21	N/A	N/A
structural_annotation	UHGV-0165524_13	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0165524_14	phrog_749	79.5	3.1e-23	N/A	unknown function
UniRef90	UHGV-0165524_14	UniRef90_A0A4Z0H451	84.7	2.55e-19	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0165524_14	1347392.CCEZ01000045_gene14	75.5	1.63e-16	N/A	N/A
PHROG	UHGV-0165524_15	phrog_10	123.2	3.3e-36	major head protein	head and packaging
UniRef90	UHGV-0165524_15	UniRef90_A0A7X5KPR6	440.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0165524_15	926561.KB900622_gene645	426.0	0	Phage capsid family	N/A
Pfam	UHGV-0165524_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0165524_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0165524_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0165524_15	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0165524_16	K01358	130.8	1.5e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0165524_16	phrog_94	218.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0165524_16	UniRef90_A0A3C1LXH1	243.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0165524_16	349161.Dred_2605	215.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0165524_16	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0165524_16	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0165524_16	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0165524_17	phrog_12	78.2	8e-23	portal protein	head and packaging
UniRef90	UHGV-0165524_17	UniRef90_UPI00090B209C	288.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0165524_17	86416.Clopa_0339	268.0	0	Phage portal protein	N/A
Pfam	UHGV-0165524_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0165524_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0165524_17	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0165524_18	phrog_9	252.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0165524_18	UniRef90_UPI001C46A542	658.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0165524_18	1211817.CCAT010000053_gene2129	635.0	0	Phage Terminase	N/A
Pfam	UHGV-0165524_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0165524_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0165524_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0165524_18	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0165524_19	phrog_5110	114.8	3.3e-34	terminase small subunit	head and packaging
UniRef90	UHGV-0165524_19	UniRef90_UPI001CF4C0FF	113.0	4.57e-30	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0165524_19	1235798.C817_02582	89.7	1.09e-21	N/A	N/A
structural_annotation	UHGV-0165524_19	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0165524_20	phrog_119	53.2	0.0000000000000046	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0165524_20	UniRef90_UPI001D07BB57	102.0	7.19e-26	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0165524_20	349161.Dred_2609	94.4	1.25e-23	HNH nucleases	N/A
COG	UHGV-0165524_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0165524_21	phrog_36	41.4	0.000000000026	transcriptional regulator	transcription regulation
PHROG	UHGV-0165524_22	phrog_1733	75.9	5.7e-22	N/A	unknown function
UniRef90	UHGV-0165524_22	UniRef90_A0A373VML2	139.0	1.06e-35	N/A	N/A
eggNOG-mapper	UHGV-0165524_22	1262449.CP6013_1921	56.2	0.00000401	N/A	N/A
COG	UHGV-0165524_22	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-0165524_22	PF11300,NF038070	N/A	N/A	N/A	N/A
KOfam	UHGV-0165524_23	K00390	99.2	7.9e-30	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0165524_23	phrog_424	118.2	6.4e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0165524_23	UniRef90_A0A372SJ55	309.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0165524_23	1151292.QEW_4547	122.0	3.53e-29	N/A	N/A
Pfam	UHGV-0165524_23	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0165524_23	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0165524_23	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0165524_24	K02315	97.7	1.5e-28	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0165524_24	phrog_50	92.0	8.3e-27	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0165524_24	UniRef90_R7F9X3	182.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0165524_24	1232446.BAIE02000011_gene1611	157.0	3.92364e-44	N/A	N/A
Pfam	UHGV-0165524_24	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-0165524_24	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0165524_24	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0165524_25	phrog_2562	146.4	2.39622e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0165524_25	UniRef90_A0A285G7C4	165.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0165524_25	1232447.BAHW02000014_gene820	155.0	3.78351e-43	N/A	N/A
Pfam	UHGV-0165524_25	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0165524_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0165524_25	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0165524_27	K22300	52.5	0.000000000000011	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0165524_27	phrog_8	46.5	0.00000000000077	transcriptional regulator	transcription regulation
UniRef90	UHGV-0165524_27	UniRef90_A0A3D3XZR0	57.4	0.00000000594	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0165524_27	658086.HMPREF0994_06811	53.9	0.000000115	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-0165524_27	retron_type_VI_hth_cluster2_1	48.2	0.00000000000031	N/A	Retron
Pfam	UHGV-0165524_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0165524_27	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0165524_27	PF01381,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0165524_28	K22300	61.3	1.9e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0165524_28	phrog_8	61.3	1.9e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0165524_28	944564.HMPREF9200_1243	62.0	0.000000014	sequence-specific DNA binding	N/A
Pfam	UHGV-0165524_28	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
COG	UHGV-0165524_28	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0165524_29	K22300	79.9	4.3e-23	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0165524_29	phrog_8	63.6	4.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0165524_29	UniRef90_U2KYY5	89.0	7.16e-20	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0165524_29	411473.RUMCAL_00402	89.0	1.2e-20	endonuclease activity	N/A
Pfam	UHGV-0165524_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0165524_29	COG3780	N/A	N/A	DNA endonuclease related to intein-encoded endonucleases	N/A
structural_annotation	UHGV-0165524_29	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0165524_33	K14059	160.9	0	int; integrase	N/A
PHROG	UHGV-0165524_33	phrog_1	159.4	0	integrase	integration and excision
UniRef90	UHGV-0165524_33	UniRef90_UPI0005D1DBC9	354.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0165524_33	1514668.JOOA01000001_gene242	354.0	0	Phage integrase family	N/A
Pfam	UHGV-0165524_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0165524_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0165524_33	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0165524_34	phrog_95	48.0	0.00000000000013	integrase	integration and excision
UniRef90	UHGV-0165524_34	UniRef90_UPI001F2B917C	117.0	8.35e-29	recombinase family protein	N/A
eggNOG-mapper	UHGV-0165524_34	398512.JQKC01000005_gene5478	112.0	1.33e-26	N/A	N/A
COG	UHGV-0165524_34	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A