UHGV-0166811 (vOTU-091928)

Viral Genome: UHGV-0166811

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0166811
vOTU ID	vOTU-091928
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_505062
Associated BioSample	SAMN06165099
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.28 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9828
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.37
Jumbo phage	No

Genome content
Genome length (bp)	26,128
GC content	57.92%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	93%
Average CDS length (bps)	507.13
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0166811_1	K16628	80.0	7.7e-24	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0166811_1	phrog_5073	104.5	1.3e-30	tail fiber protein	tail
UniRef90	UHGV-0166811_1	UniRef90_A0A8D9PDI4	651.0	0	Collagen I alpha 1	N/A
eggNOG-mapper	UHGV-0166811_1	1203606.HMPREF1526_02029	61.2	0.000000744	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0166811_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0166811_1	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
structural_annotation	UHGV-0166811_1	PF10651,NF033814,COG3470	N/A	N/A	N/A	N/A
PHROG	UHGV-0166811_2	phrog_15239	88.2	4.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0166811_2	1449126.JQKL01000003_gene1694	51.2	0.00000256	N/A	N/A
PHROG	UHGV-0166811_3	phrog_1357	259.5	0	major head protein	head and packaging
UniRef90	UHGV-0166811_3	UniRef90_A0A8D9UH64	800.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0166811_3	1449126.JQKL01000003_gene1695	454.0	0	N/A	N/A
Pfam	UHGV-0166811_3	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0166811_3	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0166811_3	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0166811_4	phrog_13908	309.4	0	N/A	unknown function
UniRef90	UHGV-0166811_4	UniRef90_A0A844DRV7	119.0	9.87e-27	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0166811_4	1410650.JHWL01000003_gene2831	122.0	1.42e-29	N/A	N/A
UniRef90	UHGV-0166811_5	UniRef90_A0A8D9PDR6	192.0	0	YsxB-like protein	N/A
Pfam	UHGV-0166811_5	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0166811_5	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0166811_6	phrog_156	327.6	0	portal protein	head and packaging
UniRef90	UHGV-0166811_6	UniRef90_A0A8D9UH10	1246.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0166811_6	748224.HMPREF9436_01396	538.0	0	N/A	N/A
structural_annotation	UHGV-0166811_6	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0166811_7	K06909	116.6	2.7e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0166811_7	phrog_979	195.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0166811_7	UniRef90_A0A8D9PDR5	1016.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0166811_7	1321782.HMPREF1986_00343	615.0	0	N/A	N/A
Pfam	UHGV-0166811_7	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0166811_7	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0166811_7	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0166811_8	UniRef90_A0A8D9PDT2	247.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-0166811_8	1226322.HMPREF1545_00042	138.0	3.4e-40	N/A	N/A
structural_annotation	UHGV-0166811_8	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0166811_9	K22299	44.2	0.0000000000045	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0166811_9	phrog_8	62.4	1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0166811_9	UniRef90_A0A8D9PDC4	150.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-0166811_9	1226322.HMPREF1545_00039	79.0	1.69e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0166811_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0166811_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0166811_9	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0166811_13	phrog_38832	45.9	0.00000000000056	N/A	unknown function
PHROG	UHGV-0166811_17	phrog_1374	57.6	1.6e-16	N/A	unknown function
UniRef90	UHGV-0166811_17	UniRef90_A0A2I6PFH1	62.8	0.00000000000879	Putative membrane protein	N/A
eggNOG-mapper	UHGV-0166811_17	1519439.JPJG01000059_gene1913	60.5	0.00000000002	N/A	N/A
structural_annotation	UHGV-0166811_17	TIGR04438	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0166811_19	PF09947,NF006816,COG4830	N/A	N/A	N/A	N/A
KOfam	UHGV-0166811_21	K00558	131.2	1.26117e-44	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0166811_21	phrog_116	152.8	0	DNA methyltransferase	other
UniRef90	UHGV-0166811_21	UniRef90_A0A1C5KYC3	320.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0166811_21	718252.FP2_16350	298.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0166811_21	oMTase_00004	161.1	0	orphan methyltransferase	RM
Pfam	UHGV-0166811_21	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0166811_21	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0166811_23	K00571	93.1	1.4e-27	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0166811_23	phrog_67	72.0	2.7e-29	DNA methyltransferase	other
UniRef90	UHGV-0166811_23	UniRef90_A0A7X8MLD3	199.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0166811_23	1125725.HMPREF1325_1312	177.0	0	N-4 methylation of cytosine	N/A
PADLOC	UHGV-0166811_23	MTase_II_00172	99.4	5.5e-29	Type II methyltransferase	RM
Pfam	UHGV-0166811_23	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0166811_23	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0166811_23	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0166811_24	phrog_190	111.7	6e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0166811_24	UniRef90_A0A8D9PDD6	274.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0166811_24	862517.HMPREF9225_1657	84.0	5.08e-19	N/A	N/A
Pfam	UHGV-0166811_24	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0166811_24	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0166811_26	phrog_15768	108.4	4.2e-34	N/A	unknown function
UniRef90	UHGV-0166811_26	UniRef90_A0A8D9PDU3	303.0	0	N/A	N/A
eggNOG-mapper	UHGV-0166811_26	203119.Cthe_2466	84.3	1.85e-16	N/A	N/A
Pfam	UHGV-0166811_26	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0166811_26	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0166811_28	K03111	146.8	2.20004e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0166811_28	phrog_44	145.2	3.69943e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0166811_28	UniRef90_G4L1H2	198.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0166811_28	693746.OBV_19910	198.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0166811_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0166811_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0166811_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0166811_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0166811_28	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0166811_29	phrog_7566	96.3	1.8e-28	N/A	unknown function
UniRef90	UHGV-0166811_29	UniRef90_A0A8D9UHC0	192.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0166811_29	693746.OBV_24070	123.0	1.91e-35	N/A	N/A
PHROG	UHGV-0166811_31	phrog_1389	80.1	2.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0166811_31	1347392.CCEZ01000060_gene3269	113.0	3.1e-31	N/A	N/A
structural_annotation	UHGV-0166811_31	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0166811_32	phrog_7838	143.0	1.90016e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0166811_32	UniRef90_A0A8D9UGW3	432.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0166811_32	742767.HMPREF9456_02052	187.0	0	N/A	N/A
structural_annotation	UHGV-0166811_32	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0166811_33	phrog_253	85.3	8e-25	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0166811_33	UniRef90_A0A8D9PDS3	317.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-0166811_33	748224.HMPREF9436_03356	107.0	3.26e-27	Siphovirus Gp157	N/A
Pfam	UHGV-0166811_33	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0166811_33	PF05565	N/A	N/A	N/A	N/A
UniRef90	UHGV-0166811_35	UniRef90_A0A8D9UH91	318.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0166811_35	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0166811_35	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0166811_37	phrog_22529	52.5	0.0000000000000063	N/A	unknown function
UniRef90	UHGV-0166811_37	UniRef90_A0A8D9UHA1	317.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-0166811_37	658088.HMPREF0987_02675	67.0	0.0000000000804	peptidase	N/A
Pfam	UHGV-0166811_37	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0166811_37	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0166811_37	COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0166811_41	phrog_8	44.1	0.0000000000045	transcriptional regulator	transcription regulation
UniRef90	UHGV-0166811_41	UniRef90_UPI000831CB3C	50.8	0.00000155	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0166811_41	394503.Ccel_3076	59.7	0.0000000000976	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0166811_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0166811_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0166811_41	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0166811_42	55511.Q4ZE02_9CAUD	50.4	0.00000879	sequence-specific DNA binding	N/A
Pfam	UHGV-0166811_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0166811_42	PF01381,MF_00535,NF041951,TIGR02607,COG3655,COG3093	N/A	N/A	N/A	N/A
UniRef90	UHGV-0166811_46	UniRef90_A0A8D9UHA6	264.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0166811_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0166811_46	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0166811_47	K14059	212.4	0	int; integrase	N/A
PHROG	UHGV-0166811_47	phrog_1	179.7	0	integrase	integration and excision
UniRef90	UHGV-0166811_47	UniRef90_U2QJL8	449.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0166811_47	1226322.HMPREF1545_00144	449.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0166811_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0166811_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0166811_47	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0166811_48	K00974	225.6	0	cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]	N/A
PHROG	UHGV-0166811_48	phrog_2244	164.5	0	tRNA nucleotidyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0166811_48	UniRef90_R6CYX9	655.0	0	tRNA nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0166811_48	1007096.BAGW01000023_gene179	385.0	0	Probable RNA and SrmB- binding site of polymerase A	N/A
Pfam	UHGV-0166811_48	PF01743	N/A	N/A	Poly A polymerase head domain	PolyA_pol
Pfam	UHGV-0166811_48	PF12627	N/A	N/A	Probable RNA and SrmB- binding site of polymerase A	PolyA_pol_RNAbd
Pfam	UHGV-0166811_48	PF13735	N/A	N/A	tRNA nucleotidyltransferase domain 2 putative	tRNA_NucTran2_2
COG	UHGV-0166811_48	COG0617	N/A	N/A	tRNA nucleotidyltransferase/poly(A) polymerase	N/A