UHGV-0167630 (vOTU-046376)

Viral Genome: UHGV-0167630

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0167630
vOTU ID	vOTU-046376
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_551681
Associated BioSample	SAMN06233224
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.2
Jumbo phage	No

Genome content
Genome length (bp)	49,182
GC content	36.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	82
CDS density	93%
Average CDS length (bps)	560.27
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0167630_1	phrog_36410	42.2	0.000000000012	N/A	unknown function
UniRef90	UHGV-0167630_1	UniRef90_A0A073JPQ1	62.4	0.00000000023	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0167630_1	574376.BAMA_21505	62.4	0.0000000000386	phage tail	N/A
COG	UHGV-0167630_1	COG4722	N/A	N/A	Phage-related protein YomH	N/A
PHROG	UHGV-0167630_2	phrog_538	204.1	0	minor tail protein	tail
UniRef90	UHGV-0167630_2	UniRef90_A0A843GTT7	168.0	1.12104e-44	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0167630_2	1034347.CAHJ01000045_gene552	112.0	4.98e-24	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0167630_2	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0167630_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_3	phrog_1220	168.9	0	head protein	head and packaging
UniRef90	UHGV-0167630_3	UniRef90_UPI0005821E94	109.0	7.64e-23	methyl-accepting chemotaxis protein	N/A
eggNOG-mapper	UHGV-0167630_3	536232.CLM_2920	107.0	5.74e-23	N/A	N/A
PHROG	UHGV-0167630_6	phrog_36	47.1	0.00000000000054	transcriptional regulator	transcription regulation
Pfam	UHGV-0167630_6	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0167630_6	PF04545,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_9	phrog_16490	259.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0167630_9	658655.HMPREF0988_00917	245.0	0	N/A	N/A
eggNOG-mapper	UHGV-0167630_10	658655.HMPREF0988_00916	53.9	0.000000266	N/A	N/A
eggNOG-mapper	UHGV-0167630_13	1273103.NM10_00919	60.5	0.000000000312	N/A	N/A
structural_annotation	UHGV-0167630_15	PF06003,MF_01077,NF037951,COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-0167630_17	K02316	132.4	2.7e-39	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0167630_17	phrog_47	140.8	1.19993e-41	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0167630_17	UniRef90_A0A843GN62	302.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0167630_17	1005057.BUAMB_052	77.4	0.000000000000718	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-0167630_17	drt-UG29	49.0	5.6e-28	DRT	DRT
Pfam	UHGV-0167630_17	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0167630_17	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0167630_17	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0167630_17	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_19	phrog_1607	44.2	0.0000000000041	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0167630_19	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-0167630_20	K02337	756.1	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0167630_20	phrog_405	687.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0167630_20	UniRef90_A0A843GPT9	897.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0167630_20	224324.aq_1008	444.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0167630_20	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0167630_20	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0167630_20	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0167630_20	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-0167630_20	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-0167630_20	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0167630_20	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0167630_21	411473.RUMCAL_02525	138.0	3.72003e-41	N/A	N/A
KOfam	UHGV-0167630_22	K03553	177.5	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0167630_22	phrog_97	176.9	0	UvsX-like recombinase	other
UniRef90	UHGV-0167630_22	UniRef90_A0A4R7L4T7	145.0	3.37e-37	Protein RecA	N/A
eggNOG-mapper	UHGV-0167630_22	469616.FMAG_01147	140.0	3.22e-36	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0167630_22	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0167630_22	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0167630_22	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_23	phrog_1706	69.1	6.4e-20	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0167630_23	UniRef90_A0A2J0N652	61.6	0.000000117	PDDEXK_1 domain-containing protein	N/A
COG	UHGV-0167630_23	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-0167630_23	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_28	phrog_159	47.6	0.00000000000015	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0167630_28	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_31	phrog_1909	131.8	4.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0167630_31	1458697.W6E8E8_9CAUD	73.9	0.00000000000334	N/A	N/A
KOfam	UHGV-0167630_32	K09882	141.3	8.50028e-42	cobS; cobaltochelatase CobS [EC:6.6.1.2]	N/A
PHROG	UHGV-0167630_32	phrog_249	206.2	0	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0167630_32	UniRef90_A0A1W1UZM7	273.0	0	AAA domain (Dynein-related subfamily)	N/A
eggNOG-mapper	UHGV-0167630_32	330395.Q30L55_9CAUD	171.0	0	ATPase activity	N/A
Pfam	UHGV-0167630_32	PF07728	N/A	N/A	AAA domain (dynein-related subfamily)	AAA_5
structural_annotation	UHGV-0167630_32	PF07726,MF_01314,TIGR01650,COG0714	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_34	phrog_6466	69.0	6.1e-20	DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0167630_34	UniRef90_A0A843GQD5	105.0	1.79e-27	DNA_ligase_aden domain-containing protein	N/A
eggNOG-mapper	UHGV-0167630_34	691965.D4P7L3_9CAUD	60.5	0.000000003	helicase activity	N/A
PHROG	UHGV-0167630_36	phrog_2423	64.0	1.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0167630_36	469660.A8HP08_9CAUD	57.4	0.00000000017	N/A	N/A
PHROG	UHGV-0167630_39	phrog_2002	48.2	0.000000000000031	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0167630_39	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0167630_40	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_42	phrog_2250	40.3	0.000000000058	N/A	unknown function
structural_annotation	UHGV-0167630_43	PF10922	N/A	N/A	N/A	N/A
KOfam	UHGV-0167630_44	K03469	161.3	0	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0167630_44	phrog_531	142.4	2.10055e-42	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0167630_44	UniRef90_A0A354UPB2	133.0	5.66e-37	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0167630_44	1089553.Tph_c24630	129.0	3.79e-36	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0167630_44	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0167630_44	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0167630_44	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0167630_45	PF14084	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_47	phrog_2412	52.4	0.0000000000000089	N/A	unknown function
PHROG	UHGV-0167630_50	phrog_16126	80.9	1.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0167630_50	665950.HMPREF1025_01978	60.8	0.000000000518	N/A	N/A
PHROG	UHGV-0167630_53	phrog_620	130.4	1.3e-38	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0167630_53	UniRef90_A0A4D6A7C4	140.0	1.9e-38	DNA modification methylase	N/A
eggNOG-mapper	UHGV-0167630_53	411459.RUMOBE_01044	106.0	3.16e-25	N/A	N/A
PADLOC	UHGV-0167630_53	MTase_II_00015	73.7	3.4e-21	Type II methyltransferase	RM
Pfam	UHGV-0167630_53	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0167630_53	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0167630_53	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_54	phrog_842	59.2	7.8e-17	beta-glucosyl-HMC-alpha-glucosyltransferase	other
eggNOG-mapper	UHGV-0167630_54	1236514.BAKL01000015_gene1638	225.0	0	N/A	N/A
Pfam	UHGV-0167630_54	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
structural_annotation	UHGV-0167630_54	PF20691,MF_00057,NF038299,COG1216	N/A	N/A	N/A	N/A
KOfam	UHGV-0167630_59	K06909	318.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0167630_59	phrog_3717	122.3	6.40393e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0167630_59	UniRef90_A0A349YI29	543.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0167630_59	536232.CLM_2529	461.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0167630_59	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0167630_59	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0167630_59	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0167630_59	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0167630_59	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0167630_61	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
UniRef90	UHGV-0167630_62	UniRef90_A0A174NC72	101.0	8.54e-19	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0167630_62	411470.RUMGNA_00122	124.0	4.99e-27	N/A	N/A
PHROG	UHGV-0167630_64	phrog_443	55.9	0.0000000000000013	holin	lysis
UniRef90	UHGV-0167630_64	UniRef90_A0A1I0BHU5	87.8	4.16e-21	Phage r1t holin	N/A
eggNOG-mapper	UHGV-0167630_64	742733.HMPREF9469_01797	62.0	0.00000000000949	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0167630_64	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
KOfam	UHGV-0167630_65	K01448	107.1	2e-31	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0167630_65	phrog_435	171.8	0	endolysin	lysis
UniRef90	UHGV-0167630_65	UniRef90_A0A4R3JAD4	514.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0167630_65	411470.RUMGNA_02814	228.0	0	Ami_3	N/A
Pfam	UHGV-0167630_65	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0167630_65	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0167630_65	PF01520,MF_00562,TIGR02883,COG0860,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_66	phrog_64	85.1	5.6e-25	portal protein	head and packaging
UniRef90	UHGV-0167630_66	UniRef90_A0A843GSM3	355.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0167630_66	1211817.CCAT010000049_gene2492	110.0	7.75e-23	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0167630_66	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_67	phrog_1657	201.6	0	head morphogenesis	head and packaging
UniRef90	UHGV-0167630_67	UniRef90_A0A1G9U003	152.0	3.01999e-40	Phage Mu protein F like protein	N/A
eggNOG-mapper	UHGV-0167630_67	1567015.A0A0A7RUI1_9VIRU	143.0	1.14e-35	Phage Mu protein F like protein	N/A
structural_annotation	UHGV-0167630_69	TIGR00310	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_70	phrog_2303	47.4	0.00000000000043	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0167630_70	1231057.AMGD01000018_gene3620	61.2	0.0000000111	N/A	N/A
structural_annotation	UHGV-0167630_70	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_71	phrog_909	73.6	2.2e-21	major head protein	head and packaging
UniRef90	UHGV-0167630_71	UniRef90_A0A512PLH0	55.5	0.000000291	Putative structural protein-phage associated	N/A
eggNOG-mapper	UHGV-0167630_71	1158612.I580_01911	71.2	0.0000000000000387	N/A	N/A
structural_annotation	UHGV-0167630_71	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_72	phrog_29	250.0	0	major head protein	head and packaging
UniRef90	UHGV-0167630_72	UniRef90_UPI00082C04A5	419.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0167630_72	1158612.I580_01912	319.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0167630_72	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0167630_72	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0167630_73	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_74	phrog_4020	71.4	1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0167630_74	445335.CBN_3083	66.6	0.000000000000265	N/A	N/A
PHROG	UHGV-0167630_75	phrog_8435	65.4	7.6e-19	N/A	unknown function
structural_annotation	UHGV-0167630_75	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0167630_76	1443122.Z958_05860	92.4	1.07e-22	N/A	N/A
Pfam	UHGV-0167630_76	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0167630_76	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_77	phrog_7585	72.2	8.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0167630_77	445335.CBN_3080	67.8	0.000000000000919	N/A	N/A
structural_annotation	UHGV-0167630_77	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_78	phrog_6686	138.9	3.09995e-41	tail tube protein	tail
UniRef90	UHGV-0167630_78	UniRef90_A0A1C6KI12	174.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0167630_78	748727.CLJU_c31250	100.0	1.13e-22	N/A	N/A
structural_annotation	UHGV-0167630_78	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0167630_79	phrog_6280	133.6	8.4e-40	N/A	unknown function
UniRef90	UHGV-0167630_79	UniRef90_UPI001AA892DF	113.0	1.15e-29	esterase	N/A
eggNOG-mapper	UHGV-0167630_79	445335.CBN_3078	115.0	5.21e-31	N/A	N/A
PHROG	UHGV-0167630_80	phrog_6541	59.1	5.2e-17	N/A	unknown function
PHROG	UHGV-0167630_81	phrog_1533	533.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0167630_81	UniRef90_A0A352TM73	454.0	0	Phage tail tape measure protein (Fragment)	N/A
eggNOG-mapper	UHGV-0167630_81	1410670.JHXF01000015_gene2302	495.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0167630_81	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0167630_81	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0167630_81	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0167630_81	PF10145,TIGR01760	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0167630_82	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A