UHGV-0170798 (vOTU-028489)

Viral Genome: UHGV-0170798

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0170798
vOTU ID	vOTU-028489
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_501213
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.2 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.02
Jumbo phage	No

Genome content
Genome length (bp)	33,104
GC content	45.27%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	94%
Average CDS length (bps)	637.10
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0170798_1	phrog_14367	41.4	0.0000000000085	N/A	unknown function
UniRef90	UHGV-0170798_1	UniRef90_A0A3N5LBU6	51.2	0.00000152	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0170798_1	1121934.AUDX01000014_gene1571	52.8	0.0000000988	Lysin motif	N/A
Pfam	UHGV-0170798_1	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0170798_1	COG1388	N/A	N/A	LysM repeat	N/A
PHROG	UHGV-0170798_4	phrog_1366	296.4	0	N/A	unknown function
UniRef90	UHGV-0170798_4	UniRef90_UPI001EDFC883	364.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0170798_4	555779.Dthio_PD3616	266.0	0	SMART AAA ATPase	N/A
Pfam	UHGV-0170798_4	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0170798_4	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0170798_4	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0170798_5	phrog_72	60.6	2.3e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0170798_5	1507.HMPREF0262_00432	112.0	1.01e-28	N/A	N/A
structural_annotation	UHGV-0170798_5	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0170798_6	phrog_270	100.9	1.6e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0170798_6	UniRef90_UPI0011DDD220	104.0	5.24e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0170798_6	1232453.BAIF02000016_gene3127	108.0	1.08e-24	N/A	N/A
Pfam	UHGV-0170798_6	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0170798_6	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0170798_6	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0170798_7	UniRef90_A0A316S7J6	101.0	1.59e-23	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0170798_7	1280706.AUJE01000046_gene1152	71.2	0.000000000000891	N/A	N/A
structural_annotation	UHGV-0170798_7	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0170798_11	phrog_10714	51.6	0.000000000000017	N/A	unknown function
structural_annotation	UHGV-0170798_11	PF21173	N/A	N/A	N/A	N/A
PHROG	UHGV-0170798_13	phrog_3878	57.0	3.7e-16	N/A	unknown function
structural_annotation	UHGV-0170798_13	PF19607	N/A	N/A	N/A	N/A
PHROG	UHGV-0170798_16	phrog_9207	43.2	0.0000000000059	N/A	unknown function
eggNOG-mapper	UHGV-0170798_16	264730.PSPPH_2145	53.5	0.000000839	N/A	N/A
structural_annotation	UHGV-0170798_20	PF16857,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-0170798_22	K03111	133.5	2.6e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0170798_22	phrog_44	141.8	4.19969e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0170798_22	UniRef90_R6WK64	182.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0170798_22	626939.HMPREF9443_01150	170.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0170798_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0170798_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0170798_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0170798_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0170798_22	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0170798_23	phrog_190	147.6	6.72623e-44	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0170798_23	UniRef90_A0A7C6K533	130.0	1.07e-36	N/A	N/A
eggNOG-mapper	UHGV-0170798_23	1347392.CCEZ01000043_gene417	124.0	3.42e-35	N/A	N/A
Pfam	UHGV-0170798_23	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0170798_23	PF06356	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0170798_24	401526.TcarDRAFT_1279	79.0	1.56e-16	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0170798_24	PF05263,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0170798_26	phrog_2329	72.5	3.5e-21	N/A	unknown function
UniRef90	UHGV-0170798_26	UniRef90_UPI001A21AB60	65.5	0.000000000000792	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0170798_26	1120746.CCNL01000005_gene152	65.9	0.00000000000139	N/A	N/A
Pfam	UHGV-0170798_26	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
structural_annotation	UHGV-0170798_26	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A
UniRef90	UHGV-0170798_27	UniRef90_A0A7G9WJD7	119.0	1.59e-30	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0170798_27	742738.HMPREF9460_00886	117.0	6.27e-31	N/A	N/A
eggNOG-mapper	UHGV-0170798_30	1280689.AUJC01000003_gene960	49.3	0.00000312	N/A	N/A
KOfam	UHGV-0170798_31	K07474	84.5	3e-24	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0170798_31	phrog_51	87.0	2.2e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0170798_31	UniRef90_UPI001C8DFA18	100.0	1.78e-24	terminase small subunit	N/A
eggNOG-mapper	UHGV-0170798_31	1391647.AVSV01000003_gene1801	92.0	1.13e-21	Terminase small subunit	N/A
Pfam	UHGV-0170798_31	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0170798_31	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0170798_31	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0170798_32	K06909	267.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0170798_32	phrog_3717	235.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0170798_32	UniRef90_A0A316S7L1	757.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0170798_32	1009370.ALO_12436	568.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-0170798_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0170798_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0170798_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0170798_32	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0170798_33	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0170798_34	phrog_156	431.1	0	portal protein	head and packaging
UniRef90	UHGV-0170798_34	UniRef90_F7NK66	501.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-0170798_34	401526.TcarDRAFT_1284	531.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-0170798_34	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0170798_34	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0170798_37	phrog_334	300.3	0	major head protein	head and packaging
UniRef90	UHGV-0170798_37	UniRef90_A0A316SB53	441.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0170798_37	401526.TcarDRAFT_1286	316.0	0	N/A	N/A
Pfam	UHGV-0170798_37	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0170798_37	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0170798_37	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0170798_38	phrog_399	47.0	0.00000000000022	structural protein	head and packaging
Pfam	UHGV-0170798_38	PF20387	N/A	N/A	N/A	DUF6682
structural_annotation	UHGV-0170798_38	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0170798_39	phrog_32822	55.2	5.1e-16	virion structural protein	head and packaging
UniRef90	UHGV-0170798_39	UniRef90_A0A1G6NQU3	312.0	0	Flagellin FlgL	N/A
eggNOG-mapper	UHGV-0170798_39	1401067.HMPREF0872_03800	134.0	1.68e-29	cellulase activity	N/A
COG	UHGV-0170798_39	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0170798_40	phrog_2427	44.3	0.000000000002	N/A	unknown function
PHROG	UHGV-0170798_42	phrog_19695	50.9	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0170798_42	1232452.BAIB02000007_gene1608	60.1	0.000000454	Collagen triple helix repeat	N/A
COG	UHGV-0170798_42	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0170798_42	PF03906	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0170798_43	PF16116	N/A	N/A	N/A	N/A
PHROG	UHGV-0170798_44	phrog_1141	62.8	5.5e-18	tail fiber protein	tail
UniRef90	UHGV-0170798_44	UniRef90_A0A1Q6R2G9	222.0	0	N/A	N/A
eggNOG-mapper	UHGV-0170798_44	1286631.X805_38770	54.3	0.00000121	N/A	N/A
Pfam	UHGV-0170798_44	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0170798_44	PF14301	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0170798_45	883156.HMPREF9282_00569	221.0	0	N/A	N/A
structural_annotation	UHGV-0170798_45	PF11134,MF_03008,NF010237,TIGR04362,COG4257	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0170798_46	PF00765,MF_02210,NF007644,COG2153	N/A	N/A	N/A	N/A
UniRef90	UHGV-0170798_47	UniRef90_A0A1G6NNF8	150.0	9.79e-40	Intein N-terminal splicing region	N/A
eggNOG-mapper	UHGV-0170798_47	1232428.CAVO010000067_gene416	162.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-0170798_49	1123288.SOV_2c10740	172.0	5.63322e-43	N/A	N/A
Pfam	UHGV-0170798_49	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT