UHGV-0171219 (vOTU-142874)

Viral Genome: UHGV-0171219

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0171219
vOTU ID	vOTU-142874
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_541188
Associated BioSample	SAMN06328454
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.11 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9709
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.98
Jumbo phage	No

Genome content
Genome length (bp)	22,722
GC content	39.15%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	95%
Average CDS length (bps)	585.41
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.11)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0171219_1	phrog_5444	53.0	0.0000000000000086	N/A	unknown function
eggNOG-mapper	UHGV-0171219_1	1239384.K4MPU6_9CAUD	56.6	0.00000000128	N/A	N/A
PHROG	UHGV-0171219_2	phrog_7488	56.1	6e-16	N/A	unknown function
structural_annotation	UHGV-0171219_2	PF08962,PF07653,COG2388	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_3	phrog_7704	44.3	0.0000000000032	N/A	unknown function
UniRef90	UHGV-0171219_3	UniRef90_A0A6A8VHL3	51.6	0.000000329	N/A	N/A
Pfam	UHGV-0171219_3	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0171219_3	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_6	phrog_986	74.6	1.2e-21	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171219_6	UniRef90_A0A413DGU9	70.9	0.0000000000000397	N/A	N/A
eggNOG-mapper	UHGV-0171219_6	1105031.HMPREF1141_1106	68.6	0.000000000000036	N/A	N/A
Pfam	UHGV-0171219_6	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0171219_6	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_8	phrog_599	42.8	0.00000000000001	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0171219_8	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0171219_8	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0171219_8	PF14354,PF02701,TIGR03655,NF041869,COG3478	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171219_9	UniRef90_R7EVG2	214.0	0	Thymidylate synthase ThyX	N/A
eggNOG-mapper	UHGV-0171219_9	1235793.C809_02394	126.0	2.14e-34	N/A	N/A
Pfam	UHGV-0171219_9	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0171219_9	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171219_11	428125.CLOLEP_01806	134.0	2.15e-38	N/A	N/A
structural_annotation	UHGV-0171219_11	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0171219_12	K07451	46.9	0.00000000000052	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0171219_12	phrog_119	79.5	4.4e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171219_12	UniRef90_A0A2V2GQ57	121.0	1.72e-34	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0171219_12	1226322.HMPREF1545_00111	110.0	5.36e-31	HNH nucleases	N/A
Pfam	UHGV-0171219_12	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0171219_12	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0171219_12	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_14	phrog_361	69.5	5e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0171219_14	UniRef90_A0A1C6H6I9	194.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0171219_14	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0171219_14	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0171219_14	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_15	phrog_9	289.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0171219_15	UniRef90_A0A0D8IV16	1044.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0171219_15	1226322.HMPREF1545_00113	868.0	0	Phage Terminase	N/A
Pfam	UHGV-0171219_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0171219_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0171219_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0171219_15	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_16	phrog_12	182.0	0	portal protein	head and packaging
UniRef90	UHGV-0171219_16	UniRef90_A0A0D8IVL0	635.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0171219_16	1226322.HMPREF1545_00114	527.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0171219_16	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0171219_16	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0171219_16	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0171219_16	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0171219_17	K06904	143.4	2.20004e-42	N/A	N/A
PHROG	UHGV-0171219_17	phrog_80	163.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0171219_17	UniRef90_A0A0D8IYC2	331.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0171219_17	1226322.HMPREF1545_00115	251.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0171219_17	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0171219_17	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0171219_17	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0171219_17	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_18	phrog_10	157.9	0	major head protein	head and packaging
UniRef90	UHGV-0171219_18	UniRef90_A0A1Y4R494	529.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0171219_18	1226322.HMPREF1545_00116	355.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0171219_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0171219_18	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0171219_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0171219_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0171219_18	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_19	phrog_2550	84.3	7.5e-25	N/A	unknown function
UniRef90	UHGV-0171219_19	UniRef90_UPI001E35E63D	77.8	7.4e-17	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0171219_19	1226322.HMPREF1545_00117	106.0	7.76e-29	N/A	N/A
structural_annotation	UHGV-0171219_19	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_20	phrog_1951	74.0	1.6e-21	head-tail adaptor	connector
UniRef90	UHGV-0171219_20	UniRef90_A0A2V2GSS5	96.7	7.73e-24	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0171219_20	1226322.HMPREF1545_00118	75.5	2.43e-16	N/A	N/A
structural_annotation	UHGV-0171219_20	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_21	phrog_5	56.4	7.5e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-0171219_21	UniRef90_A0A8J6PH82	108.0	6.49e-28	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0171219_21	411471.SUBVAR_05855	117.0	3.88e-32	N/A	N/A
Pfam	UHGV-0171219_21	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0171219_21	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_22	phrog_78	45.0	0.0000000000021	tail terminator	connector
eggNOG-mapper	UHGV-0171219_22	1408311.JNJM01000036_gene52	102.0	8.43e-27	N/A	N/A
structural_annotation	UHGV-0171219_22	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_23	phrog_88	133.2	1.8e-39	major tail protein	tail
UniRef90	UHGV-0171219_23	UniRef90_R9N908	175.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-0171219_23	1235798.C817_02573	175.0	0	phage major tail protein, phi13 family	N/A
Pfam	UHGV-0171219_23	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0171219_23	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0171219_23	PF06488,PF18316,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_24	phrog_709	116.6	1.4e-34	N/A	unknown function
eggNOG-mapper	UHGV-0171219_24	1410624.JNKK01000017_gene1983	135.0	1.26e-39	N/A	N/A
structural_annotation	UHGV-0171219_24	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_25	phrog_3033	62.3	6.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0171219_25	1341157.RF007C_02605	69.3	0.00000000000000247	N/A	N/A
PHROG	UHGV-0171219_26	phrog_5755	178.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0171219_26	UniRef90_UPI000C7C3162	482.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0171219_26	742738.HMPREF9460_04078	273.0	0	domain protein	N/A
NCBIFam	UHGV-0171219_26	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0171219_26	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0171219_26	PF20155,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_27	phrog_33	88.5	1.4e-25	distal tail protein Dit	tail
UniRef90	UHGV-0171219_27	UniRef90_A0A1C6H6D2	213.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0171219_27	1497679.EP56_07715	158.0	2.8026e-45	tail component	N/A
COG	UHGV-0171219_27	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0171219_27	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_28	phrog_1067	427.7	0	minor head protein	head and packaging
UniRef90	UHGV-0171219_28	UniRef90_A0A1C6H6B4	571.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0171219_28	1160721.RBI_I01574	441.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0171219_28	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0171219_28	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0171219_28	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0171219_28	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_29	phrog_24267	121.6	4.7e-36	N/A	unknown function
UniRef90	UHGV-0171219_29	UniRef90_A0A412AXT4	111.0	4.97e-24	N/A	N/A
eggNOG-mapper	UHGV-0171219_29	553973.CLOHYLEM_06931	127.0	3.44e-31	tail collar domain protein	N/A
COG	UHGV-0171219_29	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0171219_29	PF10651,NF040788,COG2372	N/A	N/A	N/A	N/A
KOfam	UHGV-0171219_32	K07273	203.0	0	acm; lysozyme	N/A
PHROG	UHGV-0171219_32	phrog_291	180.0	0	endolysin	lysis
UniRef90	UHGV-0171219_32	UniRef90_A0A416S3Y6	282.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0171219_32	411460.RUMTOR_02294	248.0	0	Lysin motif	N/A
Pfam	UHGV-0171219_32	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0171219_32	PF01476	N/A	N/A	LysM domain	LysM
NCBIFam	UHGV-0171219_32	TIGR02899.1	N/A	N/A	SafA/ExsA family spore coat assembly protein	N/A
COG	UHGV-0171219_32	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0171219_32	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0171219_34	phrog_1129	93.2	1.3e-27	holin	lysis
UniRef90	UHGV-0171219_34	UniRef90_UPI001C124A7D	95.9	1.25e-23	phage holin family protein	N/A
eggNOG-mapper	UHGV-0171219_34	537013.CLOSTMETH_01754	92.8	3.35e-23	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0171219_34	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0171219_34	PF16079	N/A	N/A	N/A	N/A