UHGV-0171357 (vOTU-070779)

Viral Genome: UHGV-0171357

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0171357
vOTU ID	vOTU-070779
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_575746
Associated BioSample	SAMN07449059
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.12
Jumbo phage	No

Genome content
Genome length (bp)	46,765
GC content	45.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	91%
Average CDS length (bps)	642.82
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0171357_1	phrog_16490	86.0	8.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0171357_1	658655.HMPREF0988_00917	84.3	9.54e-17	N/A	N/A
structural_annotation	UHGV-0171357_2	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171357_3	1378168.N510_03079	57.0	0.000000137	N/A	N/A
KOfam	UHGV-0171357_4	K14059	127.9	1.3e-37	int; integrase	N/A
PHROG	UHGV-0171357_4	phrog_1	141.8	6.50062e-42	integrase	integration and excision
UniRef90	UHGV-0171357_4	UniRef90_R6X1Y3	681.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0171357_4	1123250.KB908381_gene1631	332.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0171357_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0171357_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0171357_4	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0171357_6	K18830	49.2	0.00000000000013	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0171357_6	UniRef90_R6X1Y8	179.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0171357_6	641107.CDLVIII_1309	91.7	2.87e-22	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0171357_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171357_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0171357_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_10	phrog_6058	77.4	1.1e-22	N/A	unknown function
UniRef90	UHGV-0171357_10	UniRef90_A0A0U9H7T0	60.1	0.000000000198	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-0171357_10	1280689.AUJC01000011_gene1497	68.9	0.0000000000000119	N/A	N/A
structural_annotation	UHGV-0171357_10	PF12728,TIGR01764	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171357_11	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_12	phrog_14367	53.3	0.000000000000002	N/A	unknown function
UniRef90	UHGV-0171357_12	UniRef90_R6WTN1	157.0	0	Peptidoglycan-binding LysM	N/A
eggNOG-mapper	UHGV-0171357_12	397291.C804_02419	49.3	0.00000547	LysM domain	N/A
Pfam	UHGV-0171357_12	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0171357_12	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0171357_12	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_14	phrog_434	329.7	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171357_14	UniRef90_R6WGP6	592.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0171357_14	706434.HMPREF9429_00770	358.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-0171357_14	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0171357_14	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0171357_14	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0171357_14	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171357_15	UniRef90_R6WLK2	125.0	4.25e-36	Conserved domain protein	N/A
Pfam	UHGV-0171357_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171357_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0171357_15	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0171357_16	K07455	179.4	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0171357_16	phrog_148	182.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171357_16	UniRef90_R6XVK6	389.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-0171357_16	1234664.AMRO01000024_gene1791	170.0	0	RecT family	N/A
Pfam	UHGV-0171357_16	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0171357_16	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0171357_16	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0171357_16	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_17	phrog_4880	142.9	2.20004e-42	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171357_17	UniRef90_R6WTP4	474.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-0171357_17	1178540.BA70_18625	130.0	1.51e-33	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0171357_17	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0171357_17	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0171357_17	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0171357_17	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_21	phrog_10714	49.5	0.000000000000067	N/A	unknown function
structural_annotation	UHGV-0171357_21	PF21173	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_23	phrog_954	172.5	0	DNA methyltransferase	other
UniRef90	UHGV-0171357_23	UniRef90_A0A226QS88	168.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0171357_23	457405.FSDG_01549	154.0	0	methyltransferase	N/A
PADLOC	UHGV-0171357_23	MTase_II_00074	147.5	1.09301e-43	Type II methyltransferase	RM
COG	UHGV-0171357_23	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0171357_23	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171357_24	UniRef90_A0A6N7WVF3	55.1	0.00000071	Restriction endonuclease subunit S	N/A
PHROG	UHGV-0171357_28	phrog_1454	53.8	0.0000000000000031	N/A	unknown function
structural_annotation	UHGV-0171357_29	PF16857,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-0171357_31	K01160	59.5	1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0171357_31	phrog_140	132.8	1.8e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171357_31	UniRef90_A0A316S9J1	143.0	3.52006e-41	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0171357_31	743719.PaelaDRAFT_5642	123.0	3.59e-34	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0171357_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0171357_31	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0171357_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0171357_32	K03111	55.1	0.0000000000000021	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0171357_32	phrog_44	58.9	1.6e-16	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171357_32	UniRef90_R6WGR4	254.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0171357_32	1280954.HPO_10557	62.4	0.000000000223	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0171357_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0171357_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0171357_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0171357_32	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_38	phrog_15863	279.0	0	N/A	unknown function
UniRef90	UHGV-0171357_38	UniRef90_R6WLL6	602.0	0	Cytochrome c domain-containing protein	N/A
eggNOG-mapper	UHGV-0171357_38	693746.OBV_01780	124.0	4.35e-32	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0171357_38	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0171357_39	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0171357_41	K06909	90.4	2.2e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0171357_41	phrog_2	159.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0171357_41	UniRef90_UPI001D00EC11	398.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0171357_41	585503.HMPREF7545_1731	412.0	0	Terminase-like family	N/A
Pfam	UHGV-0171357_41	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0171357_41	COG5323	N/A	N/A	Phage large terminase packaging protein	N/A
structural_annotation	UHGV-0171357_41	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_43	phrog_332	435.2	0	head-tail adaptor	connector
UniRef90	UHGV-0171357_43	UniRef90_UPI001F3F9DD9	540.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0171357_43	568816.Acin_1834	600.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0171357_43	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0171357_43	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_44	phrog_528	105.5	1.7e-31	N/A	unknown function
eggNOG-mapper	UHGV-0171357_44	1401067.HMPREF0872_06805	94.7	1.69e-23	N/A	N/A
PHROG	UHGV-0171357_45	phrog_458	150.6	1.26117e-44	protease	other
eggNOG-mapper	UHGV-0171357_45	568816.Acin_1832	97.8	2.6e-22	N/A	N/A
PHROG	UHGV-0171357_46	phrog_212	204.7	0	major head protein	head and packaging
UniRef90	UHGV-0171357_46	UniRef90_A0A6J5KPX9	215.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0171357_46	568816.Acin_1831	351.0	0	N/A	N/A
Pfam	UHGV-0171357_46	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0171357_46	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_47	phrog_427	66.6	3.8e-19	N/A	unknown function
structural_annotation	UHGV-0171357_47	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_48	phrog_394	156.5	0	tail protein	tail
UniRef90	UHGV-0171357_48	UniRef90_A0A0U1KW64	125.0	9.16e-33	N/A	N/A
eggNOG-mapper	UHGV-0171357_48	1123288.SOV_1c10710	125.0	1.54e-33	N/A	N/A
structural_annotation	UHGV-0171357_48	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_49	phrog_376	611.0	0	tail protein	tail
UniRef90	UHGV-0171357_49	UniRef90_A0A0U1KV93	358.0	0	N/A	N/A
eggNOG-mapper	UHGV-0171357_49	568816.Acin_1828	678.0	0	N/A	N/A
structural_annotation	UHGV-0171357_49	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_50	phrog_308	107.4	1.1e-31	internal virion protein	head and packaging
structural_annotation	UHGV-0171357_50	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_51	phrog_418	131.1	2.4e-39	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0171357_51	568816.Acin_1826	103.0	1.5e-24	N/A	N/A
structural_annotation	UHGV-0171357_51	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_52	phrog_10475	45.4	0.00000000000056	endolysin	lysis
UniRef90	UHGV-0171357_52	UniRef90_A0A1Q6RQM5	1224.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0171357_52	1123288.SOV_2c10740	196.0	0	N/A	N/A
Pfam	UHGV-0171357_52	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
structural_annotation	UHGV-0171357_52	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_53	phrog_9880	543.8	0	N/A	unknown function
UniRef90	UHGV-0171357_53	UniRef90_A0A1Q6RQR6	4448.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0171357_53	1123288.SOV_1c10750	187.0	2.10195e-44	N/A	N/A
Pfam	UHGV-0171357_53	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-0171357_54	phrog_1640	55.7	7.1e-16	tail protein	tail
eggNOG-mapper	UHGV-0171357_54	1115515.EV102420_06_00490	69.3	0.00000000188	N/A	N/A
structural_annotation	UHGV-0171357_54	PF03906	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171357_55	PF08948	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_56	phrog_1141	61.6	1.2e-17	tail fiber protein	tail
UniRef90	UHGV-0171357_56	UniRef90_A0A1Q6R2G9	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-0171357_56	1286631.X805_38770	52.0	0.00000862	N/A	N/A
Pfam	UHGV-0171357_56	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0171357_56	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_57	phrog_4105	84.3	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0171357_57	33035.JPJF01000043_gene996	78.6	3.07e-17	N/A	N/A
PHROG	UHGV-0171357_59	phrog_872	89.7	3.6e-26	N/A	unknown function
UniRef90	UHGV-0171357_59	UniRef90_A0A350S1T8	122.0	1.06e-34	N/A	N/A
eggNOG-mapper	UHGV-0171357_59	1519439.JPJG01000060_gene1880	118.0	1.74e-31	N/A	N/A
Pfam	UHGV-0171357_59	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0171357_59	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0171357_59	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_60	phrog_918	96.7	1.1e-28	N/A	unknown function
UniRef90	UHGV-0171357_60	UniRef90_UPI000EC62F11	143.0	1.03976e-42	N/A	N/A
eggNOG-mapper	UHGV-0171357_60	411902.CLOBOL_05677	135.0	2.2e-40	N/A	N/A
Pfam	UHGV-0171357_60	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0171357_60	PF19791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171357_61	1392502.JNIO01000008_gene1280	229.0	0	N/A	N/A
structural_annotation	UHGV-0171357_61	PF21277	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171357_64	UniRef90_A0A316S6W0	99.4	1.02e-25	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-0171357_64	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0171357_64	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0171357_64	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0171357_65	phrog_21718	45.8	0.0000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0171357_66	476272.RUMHYD_01953	49.7	0.00000062	N/A	N/A