UHGV-0171523 (vOTU-086528)

Viral Genome: UHGV-0171523

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0171523
vOTU ID	vOTU-086528
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_589733
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.35 (High-quality)
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9826
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.23
Jumbo phage	No

Genome content
Genome length (bp)	35,955
GC content	43.45%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	95%
Average CDS length (bps)	643.36
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 90.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0171523_1	UniRef90_UPI001D0A947F	158.0	0	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0171523_1	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0171523_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0171523_1	PF13443,MF_02017,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171523_3	PF19824,TIGR03090	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_5	phrog_443	60.0	7.3e-17	holin	lysis
UniRef90	UHGV-0171523_5	UniRef90_UPI001896A9B9	131.0	1.09e-38	holin	N/A
eggNOG-mapper	UHGV-0171523_5	1125712.HMPREF1316_2355	77.0	6.38e-18	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0171523_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0171523_5	PF16945	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171523_6	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_7	phrog_16490	44.0	0.00000000000046	N/A	unknown function
eggNOG-mapper	UHGV-0171523_7	1235790.C805_00060	58.5	0.00000012	N/A	N/A
PHROG	UHGV-0171523_8	phrog_22984	52.7	0.0000000000000086	N/A	unknown function
PHROG	UHGV-0171523_9	phrog_21718	53.0	0.0000000000000056	N/A	unknown function
UniRef90	UHGV-0171523_9	UniRef90_A0A8D9PDT7	52.0	0.0000023	Membrane fusogenic activity protein	N/A
eggNOG-mapper	UHGV-0171523_9	476272.RUMHYD_01768	54.3	0.000000161	N/A	N/A
PHROG	UHGV-0171523_11	phrog_11037	79.1	5.5e-23	N/A	unknown function
UniRef90	UHGV-0171523_11	UniRef90_UPI001D0AE32A	583.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0171523_11	428127.EUBDOL_01569	273.0	0	N/A	N/A
Pfam	UHGV-0171523_11	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
structural_annotation	UHGV-0171523_11	PF08460,PF01551,NF040883,NF033202,COG0739,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_12	phrog_134	46.0	0.00000000000075	N/A	unknown function
Pfam	UHGV-0171523_12	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0171523_12	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-0171523_12	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171523_13	742740.HMPREF9474_02256	60.5	0.000000000151	N/A	N/A
UniRef90	UHGV-0171523_14	UniRef90_A0A1C6L0B1	301.0	0	N/A	N/A
eggNOG-mapper	UHGV-0171523_14	1235802.C823_01049	250.0	0	N/A	N/A
PHROG	UHGV-0171523_15	phrog_9534	110.0	3.2e-32	head protein	head and packaging
eggNOG-mapper	UHGV-0171523_15	748224.HMPREF9436_00702	81.3	0.00000000000000506	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0171523_16	phrog_538	129.7	2.5e-39	minor tail protein	tail
UniRef90	UHGV-0171523_16	UniRef90_UPI00189C3ED1	668.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0171523_16	428127.EUBDOL_01212	215.0	0	N/A	N/A
Pfam	UHGV-0171523_16	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0171523_16	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_17	phrog_36410	65.9	3.8e-19	N/A	unknown function
UniRef90	UHGV-0171523_17	UniRef90_UPI001897DDB7	543.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0171523_17	428127.EUBDOL_01213	194.0	0	phage tail	N/A
COG	UHGV-0171523_17	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0171523_17	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_18	phrog_1686	252.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0171523_18	UniRef90_UPI001D0A3DB9	1117.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0171523_18	1134413.ANNK01000120_gene2014	192.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0171523_18	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0171523_18	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0171523_18	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0171523_18	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_19	phrog_706	141.0	7.19987e-42	N/A	unknown function
UniRef90	UHGV-0171523_19	UniRef90_UPI001D0AAED0	388.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0171523_19	999413.HMPREF1094_00208	153.0	2.10195e-44	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0171523_19	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0171523_19	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171523_20	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_21	phrog_3099	78.0	1.5e-22	N/A	unknown function
structural_annotation	UHGV-0171523_21	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171523_22	UniRef90_UPI001D09DA0D	303.0	0	ABC transporter permease	N/A
structural_annotation	UHGV-0171523_22	PF16807	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_23	phrog_556	48.5	0.00000000000015	minor head protein	head and packaging
UniRef90	UHGV-0171523_23	UniRef90_UPI001D09B824	286.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0171523_23	642492.Clole_0824	63.5	0.0000000000732	Minor capsid protein	N/A
Pfam	UHGV-0171523_23	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0171523_23	PF11114	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171523_24	UniRef90_UPI001E2BB5D0	84.0	1.93e-18	minor capsid protein	N/A
structural_annotation	UHGV-0171523_24	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_26	phrog_212	226.9	0	major head protein	head and packaging
UniRef90	UHGV-0171523_26	UniRef90_UPI00189A455D	510.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0171523_26	552396.HMPREF0863_00277	369.0	0	N/A	N/A
structural_annotation	UHGV-0171523_26	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_27	phrog_194	99.0	6e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0171523_27	UniRef90_UPI001897D024	280.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0171523_27	1232449.BAHV02000010_gene2713	93.2	3.73e-21	N/A	N/A
Pfam	UHGV-0171523_27	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0171523_27	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_28	phrog_3675	95.1	4.4e-28	N/A	unknown function
UniRef90	UHGV-0171523_28	UniRef90_UPI001D09CC06	182.0	0	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0171523_28	1123250.KB908443_gene1604	85.5	2.96e-20	YjcQ protein	N/A
Pfam	UHGV-0171523_28	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0171523_28	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_29	phrog_581	279.6	0	minor head protein	head and packaging
UniRef90	UHGV-0171523_29	UniRef90_UPI001D0B3D9B	720.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0171523_29	552396.HMPREF0863_00280	262.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0171523_29	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0171523_29	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171523_29	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_30	phrog_533	256.8	0	portal protein	head and packaging
UniRef90	UHGV-0171523_30	UniRef90_UPI001430A874	566.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0171523_30	552396.HMPREF0863_00281	476.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0171523_30	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0171523_31	K06909	84.1	2.1e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0171523_31	phrog_2	105.0	1.4e-30	terminase large subunit	head and packaging
UniRef90	UHGV-0171523_31	UniRef90_UPI001D0AA0D4	836.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0171523_31	552396.HMPREF0863_00282	471.0	0	DNA packaging	N/A
Pfam	UHGV-0171523_31	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0171523_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0171523_31	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_32	phrog_2412	64.2	2.8e-18	N/A	unknown function
UniRef90	UHGV-0171523_32	UniRef90_UPI000427CABE	59.7	0.0000000257	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0171523_32	1232449.BAHV02000018_gene1532	70.1	0.000000000000703	N/A	N/A
KOfam	UHGV-0171523_33	K07319	133.0	2.9e-39	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0171523_33	phrog_498	448.9	0	DNA methyltransferase	other
UniRef90	UHGV-0171523_33	UniRef90_UPI001D0A8584	870.0	0	DNA modification methylase	N/A
eggNOG-mapper	UHGV-0171523_33	521003.COLINT_02335	431.0	0	DNA methylase	N/A
PADLOC	UHGV-0171523_33	MTase_II_00015	255.0	0	Type II methyltransferase	RM
Pfam	UHGV-0171523_33	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0171523_33	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0171523_33	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0171523_33	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171523_34	TIGR01637	N/A	N/A	N/A	N/A
KOfam	UHGV-0171523_35	K14440	130.7	8.4e-40	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0171523_35	phrog_62	395.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171523_35	UniRef90_UPI001E5F6A13	891.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0171523_35	552396.HMPREF0863_00284	544.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0171523_35	ZorD1_00007	101.0	1.4e-29	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0171523_35	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0171523_35	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0171523_35	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0171523_35	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_36	phrog_93	70.7	2.2e-20	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171523_36	UniRef90_UPI00189BA373	207.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0171523_36	1122146.AUHP01000010_gene1025	95.1	3.42e-24	VRR_NUC	N/A
structural_annotation	UHGV-0171523_36	PF01870,MF_00130,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_38	phrog_2245	76.5	3.5e-22	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0171523_38	UniRef90_A0A373NRP8	60.1	0.00000000456	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0171523_38	1680.BADO_1259	57.8	0.00000000683	N/A	N/A
PHROG	UHGV-0171523_39	phrog_256	975.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171523_39	UniRef90_UPI001D0A1C03	1596.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0171523_39	552396.HMPREF0863_00286	897.0	0	N/A	N/A
Pfam	UHGV-0171523_39	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0171523_39	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0171523_39	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-0171523_42	K02334	794.8	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0171523_42	phrog_17	388.6	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171523_42	UniRef90_UPI001D0A031A	1325.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0171523_42	1235796.C815_00942	613.0	0	DNA polymerase	N/A
Pfam	UHGV-0171523_42	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0171523_42	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0171523_42	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_43	phrog_112	137.2	1.10001e-40	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171523_43	UniRef90_UPI0018993946	398.0	0	N/A	N/A
eggNOG-mapper	UHGV-0171523_43	552396.HMPREF0863_00290	152.0	1.28919e-43	N/A	N/A
Pfam	UHGV-0171523_43	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0171523_43	PF10991,MF_04153	N/A	N/A	N/A	N/A
PHROG	UHGV-0171523_44	phrog_69	326.4	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171523_44	UniRef90_UPI001D0AE809	716.0	0	N/A	N/A
eggNOG-mapper	UHGV-0171523_44	1235796.C815_00944	341.0	0	N/A	N/A
Pfam	UHGV-0171523_44	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0171523_44	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0171523_44	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171523_47	PF06786	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171523_48	NF040990	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171523_50	PF07378,MF_00783,COG5443	N/A	N/A	N/A	N/A
KOfam	UHGV-0171523_53	K18830	59.7	7.8e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0171523_53	UniRef90_UPI001D0B4888	175.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0171523_53	411470.RUMGNA_00191	89.4	2.76e-21	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0171523_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171523_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0171523_53	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A