UHGV-0171637 (vOTU-028538)

Viral Genome: UHGV-0171637

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0171637
vOTU ID	vOTU-028538
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_592488
Associated BioSample	SAMN09781743
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.17 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9824
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.85
Jumbo phage	No

Genome content
Genome length (bp)	36,033
GC content	53.36%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	92%
Average CDS length (bps)	519.84
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.17)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0171637_1	phrog_1535	54.0	0.0000000000000013	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0171637_1	693746.OBV_18190	215.0	0	domain protein	N/A
COG	UHGV-0171637_1	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_2	phrog_1194	60.3	3.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0171637_2	1226322.HMPREF1545_00060	238.0	0	N/A	N/A
structural_annotation	UHGV-0171637_2	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_3	phrog_13879	251.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0171637_3	1226322.HMPREF1545_00061	490.0	0	N/A	N/A
structural_annotation	UHGV-0171637_3	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
KOfam	UHGV-0171637_5	K01361	60.4	1.3e-17	E3.4.21.96; lactocepin [EC:3.4.21.96]	N/A
PHROG	UHGV-0171637_5	phrog_11157	228.3	0	N/A	unknown function
UniRef90	UHGV-0171637_5	UniRef90_UPI001C10C6DC	391.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0171637_5	476272.RUMHYD_02867	291.0	0	N/A	N/A
Pfam	UHGV-0171637_5	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0171637_5	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
NCBIFam	UHGV-0171637_5	NF033510.3	N/A	N/A	Ca2+-stabilized repeat-containing adhesin	N/A
COG	UHGV-0171637_5	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0171637_5	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_6	phrog_18725	66.7	1.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0171637_6	1235797.C816_02657	72.0	0.00000000000694	N/A	N/A
COG	UHGV-0171637_6	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0171637_6	PF13754,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_8	phrog_2295	60.6	2.4e-18	N/A	unknown function
Pfam	UHGV-0171637_8	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0171637_8	PF21722	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_11	phrog_2310	59.1	4.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0171637_11	1151292.QEW_0364	52.8	0.00000000829	N/A	N/A
structural_annotation	UHGV-0171637_13	PF08481,NF033814,COG2372	N/A	N/A	N/A	N/A
KOfam	UHGV-0171637_14	K13023	51.7	0.0000000000000037	CPN2; carboxypeptidase N regulatory subunit	N/A
PHROG	UHGV-0171637_14	phrog_35892	99.2	9.80909e-45	N/A	unknown function
Pfam	UHGV-0171637_14	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
Pfam	UHGV-0171637_14	PF13855	N/A	N/A	Leucine rich repeat	LRR_8
structural_annotation	UHGV-0171637_14	PF13306,NF041351	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_15	phrog_4105	102.9	1.9e-30	N/A	unknown function
UniRef90	UHGV-0171637_15	UniRef90_A0A8D9UHA9	202.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-0171637_15	411460.RUMTOR_01326	139.0	9.54004e-42	N/A	N/A
PHROG	UHGV-0171637_16	phrog_1129	77.1	1.4e-22	holin	lysis
UniRef90	UHGV-0171637_16	UniRef90_A0A8D9PDD4	184.0	0	Holin	N/A
eggNOG-mapper	UHGV-0171637_16	1226322.HMPREF1545_00069	110.0	1.24e-30	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0171637_16	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0171637_16	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_17	phrog_435	55.1	0.0000000000000015	endolysin	lysis
UniRef90	UHGV-0171637_17	UniRef90_A0A8D9PDS4	450.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-0171637_17	1226322.HMPREF1545_01953	89.0	1.84e-18	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0171637_17	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0171637_17	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_19	phrog_3754	120.2	1.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-0171637_19	1226322.HMPREF1545_00073	175.0	0	N/A	N/A
PHROG	UHGV-0171637_20	phrog_21718	104.4	1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0171637_20	397290.C810_05210	74.7	0.0000000000000093	N/A	N/A
PHROG	UHGV-0171637_21	phrog_22984	84.1	9.1e-25	N/A	unknown function
PHROG	UHGV-0171637_22	phrog_16490	145.5	6.72623e-44	N/A	unknown function
eggNOG-mapper	UHGV-0171637_22	1408437.JNJN01000043_gene803	149.0	1.32002e-41	N/A	N/A
PHROG	UHGV-0171637_23	phrog_20016	192.6	0	N/A	unknown function
UniRef90	UHGV-0171637_23	UniRef90_A0A285PT46	197.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0171637_23	397290.C810_05214	164.0	0	N/A	N/A
structural_annotation	UHGV-0171637_23	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_24	phrog_28802	67.6	1.4e-19	N/A	unknown function
structural_annotation	UHGV-0171637_24	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171637_25	1226322.HMPREF1545_00079	77.0	7.06e-17	N/A	N/A
KOfam	UHGV-0171637_26	K06400	288.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0171637_26	phrog_95	292.6	0	integrase	integration and excision
UniRef90	UHGV-0171637_26	UniRef90_A0A1C6HT72	379.0	0	Resolvase, N terminal domain	N/A
eggNOG-mapper	UHGV-0171637_26	357809.Cphy_2997	271.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0171637_26	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0171637_26	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0171637_26	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0171637_26	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171637_27	UniRef90_A0A8D9UHA6	297.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0171637_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0171637_27	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171637_31	UniRef90_A0A1C5WZX8	53.5	0.000000791	HTH-type transcriptional regulator PuuR	N/A
Pfam	UHGV-0171637_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171637_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0171637_31	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_32	phrog_8	42.7	0.000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0171637_32	UniRef90_A0A328UFC2	69.7	0.0000000000000268	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0171637_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171637_32	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0171637_32	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171637_34	UniRef90_A0A8D9UH91	177.0	0	HTH cro/C1-type domain-containing protein	N/A
PHROG	UHGV-0171637_36	phrog_253	84.8	1.2e-24	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171637_36	UniRef90_A0A8D9PDS3	314.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-0171637_36	748224.HMPREF9436_03356	106.0	4.62e-27	Siphovirus Gp157	N/A
Pfam	UHGV-0171637_36	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0171637_36	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_37	phrog_7838	140.9	8.2004e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171637_37	UniRef90_A0A8D9UGW3	429.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0171637_37	742767.HMPREF9456_02052	189.0	0	N/A	N/A
structural_annotation	UHGV-0171637_37	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_38	phrog_72	58.7	5.3e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171637_38	UniRef90_A0A8D9PDS2	335.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0171637_38	445972.ANACOL_01825	133.0	5.57e-37	N/A	N/A
structural_annotation	UHGV-0171637_38	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_40	phrog_7566	96.8	1.3e-28	N/A	unknown function
UniRef90	UHGV-0171637_40	UniRef90_A0A8D9UHC0	193.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0171637_40	693746.OBV_24070	122.0	5.46e-35	N/A	N/A
structural_annotation	UHGV-0171637_41	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
KOfam	UHGV-0171637_42	K03111	131.7	9e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0171637_42	phrog_44	126.9	1.6e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171637_42	UniRef90_A0A8D9PDS7	245.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-0171637_42	1297617.JPJD01000076_gene1093	119.0	2.14e-32	Single-strand binding protein family	N/A
Pfam	UHGV-0171637_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0171637_42	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0171637_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0171637_42	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0171637_42	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_43	phrog_15768	106.9	4.6e-34	N/A	unknown function
UniRef90	UHGV-0171637_43	UniRef90_A0A8D9PDU3	312.0	0	N/A	N/A
eggNOG-mapper	UHGV-0171637_43	203119.Cthe_2466	83.2	5.05e-16	N/A	N/A
Pfam	UHGV-0171637_43	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0171637_43	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_45	phrog_190	104.7	8.1e-31	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171637_45	UniRef90_A0A8D9PDD6	273.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0171637_45	553220.CAMGR0001_2115	82.4	2.2e-18	N/A	N/A
Pfam	UHGV-0171637_45	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0171637_45	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0171637_46	K00390	46.7	0.000000000000048	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0171637_46	phrog_424	118.5	5.7e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0171637_46	UniRef90_A0A1H7KWC5	310.0	0	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	N/A
eggNOG-mapper	UHGV-0171637_46	665956.HMPREF1032_00140	271.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0171637_46	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0171637_46	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0171637_46	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0171637_48	K00558	112.4	3.6e-37	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0171637_48	phrog_116	138.4	0	DNA methyltransferase	other
UniRef90	UHGV-0171637_48	UniRef90_A0A1C5KYC3	285.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0171637_48	718252.FP2_16350	276.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0171637_48	oMTase_00004	129.7	0	orphan methyltransferase	RM
Pfam	UHGV-0171637_48	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0171637_48	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0171637_50	phrog_38832	99.5	1.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0171637_50	665956.HMPREF1032_03087	99.0	2.56e-24	N/A	N/A
UniRef90	UHGV-0171637_54	UniRef90_A0A8D9PDK2	87.4	1.72e-20	Zinc-ribbon containing domain	N/A
structural_annotation	UHGV-0171637_55	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
KOfam	UHGV-0171637_56	K22299	47.4	0.00000000000046	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0171637_56	phrog_8	64.7	2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0171637_56	UniRef90_A0A8D9PDC4	152.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-0171637_56	1226322.HMPREF1545_00039	79.0	1.69e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0171637_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171637_56	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0171637_56	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0171637_58	K07319	120.1	2.1e-35	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0171637_58	phrog_498	424.3	0	DNA methyltransferase	other
UniRef90	UHGV-0171637_58	UniRef90_A0A810Q3Z7	422.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0171637_58	1423758.BN55_01455	419.0	0	DNA methylase	N/A
PADLOC	UHGV-0171637_58	MTase_II_00015	223.0	0	Type II methyltransferase	RM
Pfam	UHGV-0171637_58	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0171637_58	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0171637_58	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0171637_58	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0171637_60	K06909	112.9	3.5e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0171637_60	phrog_2	120.2	2.9e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0171637_60	UniRef90_A0A3D3Y0N9	422.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0171637_60	1226322.HMPREF1545_00043	395.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0171637_60	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0171637_60	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0171637_60	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0171637_60	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_61	phrog_533	373.9	0	portal protein	head and packaging
UniRef90	UHGV-0171637_61	UniRef90_A0A1C5N775	583.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0171637_61	1226322.HMPREF1545_00044	543.0	0	N/A	N/A
Pfam	UHGV-0171637_61	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0171637_61	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0171637_62	phrog_28328	80.8	1.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0171637_62	428125.CLOLEP_01381	79.0	4.39e-18	N/A	N/A
PHROG	UHGV-0171637_63	phrog_581	292.8	0	minor head protein	head and packaging
UniRef90	UHGV-0171637_63	UniRef90_UPI001D080D49	547.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0171637_63	1226322.HMPREF1545_00046	346.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0171637_63	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0171637_63	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171637_63	PF06152	N/A	N/A	N/A	N/A