UHGV-0172064 (vOTU-140323)

Viral Genome: UHGV-0172064

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0172064
vOTU ID	vOTU-140323
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_576375
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.4 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.28
Jumbo phage	No

Genome content
Genome length (bp)	25,679
GC content	28.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	28
CDS density	93%
Average CDS length (bps)	850.39
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.4)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0172064_1	phrog_29295	91.8	5.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0172064_1	1292035.H476_1039	299.0	0	DNA recombination	N/A
PADLOC	UHGV-0172064_1	LmuB1_00006	275.3	0	AAA ATPase domain	Lamassu
COG	UHGV-0172064_1	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
PHROG	UHGV-0172064_2	phrog_1305	108.1	6.2e-32	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172064_2	UniRef90_UPI0016550F1B	222.0	0	N/A	N/A
eggNOG-mapper	UHGV-0172064_2	999411.HMPREF1092_01238	160.0	0	N/A	N/A
Pfam	UHGV-0172064_2	PF13643	N/A	N/A	N/A	DUF4145
structural_annotation	UHGV-0172064_2	PF13643,COG1895	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_3	phrog_509	306.8	0	terminase small subunit	head and packaging
UniRef90	UHGV-0172064_3	UniRef90_A0A0M1V0L2	419.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0172064_3	1292035.H476_1020	419.0	0	DNA packaging	N/A
Pfam	UHGV-0172064_3	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
NCBIFam	UHGV-0172064_3	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0172064_3	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172064_3	NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0172064_4	K06909	73.5	2.7e-21	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0172064_4	phrog_2	84.7	1.9e-24	terminase large subunit	head and packaging
UniRef90	UHGV-0172064_4	UniRef90_A0A0M1V0L9	896.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0172064_4	1292035.H476_1019	896.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0172064_4	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0172064_4	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0172064_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0172064_4	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_5	phrog_533	390.9	0	portal protein	head and packaging
UniRef90	UHGV-0172064_5	UniRef90_A0A848BG51	826.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0172064_5	1292035.H476_1018	885.0	0	N/A	N/A
Pfam	UHGV-0172064_5	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0172064_5	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_6	phrog_581	354.1	0	minor head protein	head and packaging
UniRef90	UHGV-0172064_6	UniRef90_UPI0005E2F04E	1105.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0172064_6	1292035.H476_1017	760.0	0	N/A	N/A
Pfam	UHGV-0172064_6	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0172064_6	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172064_6	PF06152,PF15887,TIGR01641,COG4307	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_8	phrog_194	173.2	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0172064_8	UniRef90_UPI0005E2BC6E	241.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0172064_8	1292035.H476_1015	262.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0172064_8	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0172064_8	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_9	phrog_247	322.9	0	major head protein	head and packaging
UniRef90	UHGV-0172064_9	UniRef90_A0A6M1WIR1	553.0	0	Phage coat protein	N/A
eggNOG-mapper	UHGV-0172064_9	1292035.H476_1014	722.0	0	N/A	N/A
COG	UHGV-0172064_9	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0172064_9	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_10	phrog_541	80.6	1.8e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-0172064_10	536233.CLO_0887	68.9	0.000000000000163	N/A	N/A
PHROG	UHGV-0172064_11	phrog_3366	143.9	6.40393e-43	N/A	unknown function
eggNOG-mapper	UHGV-0172064_11	1151292.QEW_4533	132.0	1.02e-37	N/A	N/A
Pfam	UHGV-0172064_11	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0172064_11	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_12	phrog_556	93.1	2.3e-27	minor head protein	head and packaging
UniRef90	UHGV-0172064_12	UniRef90_A0A848BIW5	199.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0172064_12	1292035.H476_1011	229.0	0	Minor capsid protein	N/A
Pfam	UHGV-0172064_12	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0172064_12	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_13	phrog_3266	187.5	0	tail completion	connector
UniRef90	UHGV-0172064_13	UniRef90_A0A848BCA5	261.0	0	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0172064_13	1292035.H476_1010	283.0	0	N/A	N/A
structural_annotation	UHGV-0172064_13	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_14	phrog_3099	198.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0172064_14	1292035.H476_1009	312.0	0	N/A	N/A
structural_annotation	UHGV-0172064_14	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_15	phrog_4450	110.7	9.5e-33	N/A	unknown function
UniRef90	UHGV-0172064_15	UniRef90_UPI0018AB083C	70.1	0.00000000000115	AP endonuclease	N/A
eggNOG-mapper	UHGV-0172064_15	931276.Cspa_c07520	55.1	0.0000000693	N/A	N/A
Pfam	UHGV-0172064_15	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0172064_15	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_16	phrog_706	186.8	0	N/A	unknown function
UniRef90	UHGV-0172064_16	UniRef90_UPI00016BD3C4	233.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0172064_16	1292035.H476_1007	393.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0172064_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0172064_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_17	phrog_58	204.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0172064_17	UniRef90_A0A0M1V0W6	1402.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0172064_17	1292035.H476_1006	1402.0	0	tape measure	N/A
Pfam	UHGV-0172064_17	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-0172064_17	PF04691	N/A	N/A	Apolipoprotein C-I (ApoC-1)	ApoC-I
NCBIFam	UHGV-0172064_17	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0172064_17	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0172064_17	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_18	phrog_33	60.8	3.5e-17	distal tail protein Dit	tail
UniRef90	UHGV-0172064_18	UniRef90_A0A0M1V0M8	431.0	0	Conserved phage-related protein	N/A
eggNOG-mapper	UHGV-0172064_18	1292035.H476_1005	431.0	0	tail component	N/A
COG	UHGV-0172064_18	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0172064_18	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_19	phrog_7043	456.2	0	tail protein	tail
UniRef90	UHGV-0172064_19	UniRef90_UPI0005E10307	1462.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0172064_19	1292035.H476_1004	1451.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0172064_19	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0172064_19	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0172064_19	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0172064_19	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_20	phrog_6782	76.4	3.5e-22	tail fiber protein	tail
UniRef90	UHGV-0172064_20	UniRef90_UPI0005E2D3CF	1448.0	0	pyocin knob domain-containing protein	N/A
Pfam	UHGV-0172064_20	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0172064_20	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0172064_22	phrog_134	57.8	1.5e-16	N/A	unknown function
UniRef90	UHGV-0172064_22	UniRef90_A0A0M1V0W7	120.0	8.28e-35	Xkdx family protein	N/A
Pfam	UHGV-0172064_22	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0172064_22	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
PHROG	UHGV-0172064_23	phrog_1193	71.7	8.2e-21	hemolysin	other
UniRef90	UHGV-0172064_23	UniRef90_A0A0M1V0N0	153.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0172064_23	1292035.H476_1000	153.0	0	Haemolysin XhlA	N/A
Pfam	UHGV-0172064_23	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
PHROG	UHGV-0172064_24	phrog_1129	96.6	1.3e-28	holin	lysis
UniRef90	UHGV-0172064_24	UniRef90_A0A0A8WDY8	156.0	0	Putative phage holin protein	N/A
eggNOG-mapper	UHGV-0172064_24	1292035.H476_0999	156.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0172064_24	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0172064_24	PF16079	N/A	N/A	N/A	N/A
KOfam	UHGV-0172064_25	K01448	218.7	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0172064_25	phrog_435	192.5	0	endolysin	lysis
UniRef90	UHGV-0172064_25	UniRef90_UPI0005DFD048	511.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0172064_25	1292035.H476_0998	350.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0172064_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0172064_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0172064_25	PF01520,MF_00562,TIGR02883,COG0860,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0172064_27	phrog_17658	104.4	1.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0172064_27	1292035.H476_0995	331.0	0	N/A	N/A
structural_annotation	UHGV-0172064_27	PF18116	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172064_28	1292035.H476_3452	78.6	6.41e-18	ABC-type nitrate sulfonate bicarbonate transport	N/A
COG	UHGV-0172064_28	COG0715	N/A	N/A	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	N/A