UHGV-0172082 (vOTU-010867)

Viral Genome: UHGV-0172082

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0172082
vOTU ID	vOTU-010867
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_588029
Associated BioSample	SAMN09781777
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.75 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9818
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.02
Jumbo phage	No

Genome content
Genome length (bp)	41,782
GC content	58.64%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	94%
Average CDS length (bps)	664.83
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.75)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0172082_1	phrog_21498	69.7	5.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0172082_1	469378.Ccur_02830	73.9	0.0000000000000254	DNA binding	N/A
COG	UHGV-0172082_1	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-0172082_2	phrog_3584	113.7	1.6e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0172082_2	642492.Clole_0725	67.8	0.000000000123	N/A	N/A
structural_annotation	UHGV-0172082_2	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0172082_4	phrog_606	65.4	1e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0172082_4	UniRef90_UPI001F487344	122.0	4.5e-33	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0172082_4	397290.C810_05185	122.0	1.83e-33	DNA-packaging protein gp3	N/A
Pfam	UHGV-0172082_4	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0172082_4	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0172082_5	K06909	152.0	4.2039e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0172082_5	phrog_979	137.8	4.1002e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0172082_5	UniRef90_A0A810Q5R0	644.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0172082_5	1410650.JHWL01000003_gene2834	616.0	0	N/A	N/A
Pfam	UHGV-0172082_5	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0172082_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0172082_5	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0172082_6	phrog_511	224.5	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0172082_6	1410650.JHWL01000003_gene2827	323.0	0	N/A	N/A
structural_annotation	UHGV-0172082_6	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172082_8	537007.BLAHAN_05255	58.9	0.00000173	N/A	N/A
PHROG	UHGV-0172082_9	phrog_37329	47.2	0.00000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0172082_9	1395587.P364_0113810	56.6	0.00000805	Fibronectin type 3 domain	N/A
Pfam	UHGV-0172082_9	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-0172082_9	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0172082_9	PF17744,PF16655,MF_01905,NF038116,COG3979,COG2033	N/A	N/A	N/A	N/A
PHROG	UHGV-0172082_11	phrog_156	297.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0172082_11	1410650.JHWL01000003_gene2833	539.0	0	N/A	N/A
structural_annotation	UHGV-0172082_11	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0172082_12	phrog_13908	143.2	1.69978e-42	N/A	unknown function
eggNOG-mapper	UHGV-0172082_12	1410650.JHWL01000003_gene2831	99.8	1.29e-21	N/A	N/A
PHROG	UHGV-0172082_13	phrog_1357	217.5	0	major head protein	head and packaging
UniRef90	UHGV-0172082_13	UniRef90_A0A2V2CFL5	398.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0172082_13	1410650.JHWL01000003_gene2830	275.0	0	N/A	N/A
Pfam	UHGV-0172082_13	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0172082_13	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0172082_13	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0172082_15	phrog_12105	123.4	1.2e-36	N/A	unknown function
eggNOG-mapper	UHGV-0172082_15	1226322.HMPREF1545_03850	62.8	0.0000000000727	N/A	N/A
UniRef90	UHGV-0172082_16	UniRef90_R5DCX9	185.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0172082_16	1410650.JHWL01000003_gene2815	136.0	2.52e-33	N/A	N/A
PHROG	UHGV-0172082_17	phrog_22978	133.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0172082_17	1408437.JNJN01000039_gene389	484.0	0	heme binding	N/A
COG	UHGV-0172082_17	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0172082_18	PF01835,NF005176,COG5456	N/A	N/A	N/A	N/A
KOfam	UHGV-0172082_19	K16628	178.5	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0172082_19	phrog_819	153.4	0	tail protein	tail
eggNOG-mapper	UHGV-0172082_19	1232443.BAIA02000078_gene14	84.3	0.0000000000000485	nuclear chromosome segregation	N/A
Pfam	UHGV-0172082_19	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0172082_19	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0172082_19	PF06903	N/A	N/A	N/A	N/A
PHROG	UHGV-0172082_20	phrog_37900	63.6	7.6e-26	N/A	unknown function
UniRef90	UHGV-0172082_20	UniRef90_R5IRZ6	384.0	0	N/A	N/A
eggNOG-mapper	UHGV-0172082_20	1519439.JPJG01000060_gene1894	252.0	0	N/A	N/A
Pfam	UHGV-0172082_20	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0172082_20	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0172082_20	PF19789,PF13620,NF033708	N/A	N/A	N/A	N/A
PHROG	UHGV-0172082_21	phrog_937	60.2	4.6e-17	hemolysin	other
eggNOG-mapper	UHGV-0172082_21	1519439.JPJG01000023_gene533	77.4	2.81e-17	N/A	N/A
PHROG	UHGV-0172082_23	phrog_6918	94.5	7.5e-28	holin	lysis
UniRef90	UHGV-0172082_23	UniRef90_A0A316QCY7	103.0	1.22e-26	Holin	N/A
eggNOG-mapper	UHGV-0172082_23	1297617.JPJD01000020_gene301	102.0	8.51e-27	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0172082_23	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0172082_23	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0172082_24	phrog_14030	142.6	2.49992e-42	N/A	unknown function
UniRef90	UHGV-0172082_24	UniRef90_R6LL81	246.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0172082_24	1121866.AUGK01000003_gene1444	95.5	7.87e-20	amidase activity	N/A
COG	UHGV-0172082_24	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0172082_25	phrog_5783	295.8	0	N/A	unknown function
UniRef90	UHGV-0172082_25	UniRef90_A0A7X2P6J8	291.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-0172082_25	742742.HMPREF9452_00448	274.0	0	NYN domain	N/A
Pfam	UHGV-0172082_25	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-0172082_25	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-0172082_25	PF01936,TIGR00288,COG1432	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172082_28	UniRef90_A0A7M1RTM1	77.4	0.0000000000000119	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0172082_28	1378168.N510_03079	69.3	0.00000000000562	N/A	N/A
KOfam	UHGV-0172082_29	K14059	207.0	0	int; integrase	N/A
PHROG	UHGV-0172082_29	phrog_1	197.2	0	integrase	integration and excision
UniRef90	UHGV-0172082_29	UniRef90_A0A212JT52	255.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-0172082_29	1507.HMPREF0262_00307	200.0	0	Phage integrase family	N/A
Pfam	UHGV-0172082_29	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0172082_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0172082_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0172082_29	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-0172082_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0172082_30	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0172082_34	K22300	58.1	2.2e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0172082_34	phrog_8	50.7	0.000000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172082_34	UniRef90_A0A844DFR0	117.0	2.09e-31	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0172082_34	748224.HMPREF9436_01444	113.0	1.57e-30	N/A	N/A
Pfam	UHGV-0172082_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172082_34	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0172082_34	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172082_38	642492.Clole_0961	69.7	0.00000000000000757	N/A	N/A
structural_annotation	UHGV-0172082_38	PF12286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172082_39	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172082_41	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172082_42	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-0172082_46	K00558	159.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0172082_46	phrog_363	245.0	0	DNA methyltransferase	other
UniRef90	UHGV-0172082_46	UniRef90_G4KRB8	342.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0172082_46	693746.OBV_01900	342.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0172082_46	MTase_II_00058	121.4	5.7e-36	Type II methyltransferase	RM
Pfam	UHGV-0172082_46	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0172082_46	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0172082_46	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0172082_46	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0172082_47	K00390	105.5	6.1e-31	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0172082_47	phrog_424	117.5	7e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0172082_47	UniRef90_UPI001D087498	417.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0172082_47	1408437.JNJN01000032_gene2312	333.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0172082_47	BrxP_00001	67.1	9.4e-20	BrxP	BREX
Pfam	UHGV-0172082_47	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0172082_47	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0172082_47	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
Pfam	UHGV-0172082_48	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0172082_48	NF041588	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172082_49	665956.HMPREF1032_03087	66.6	0.0000000000134	N/A	N/A
PHROG	UHGV-0172082_53	phrog_22543	44.5	0.0000000000033	N/A	unknown function
PHROG	UHGV-0172082_54	phrog_190	100.2	2.3e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172082_54	UniRef90_UPI0006C2AC63	128.0	3.25e-35	N/A	N/A
eggNOG-mapper	UHGV-0172082_54	1226322.HMPREF1545_00295	119.0	5.04e-32	N/A	N/A
Pfam	UHGV-0172082_54	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0172082_54	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0172082_56	phrog_374	57.4	3.4e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0172082_56	862514.HMPREF0623_0036	62.0	0.000000000343	N/A	N/A
PHROG	UHGV-0172082_58	phrog_2245	83.7	2.2e-24	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0172082_58	UniRef90_A0A4U9RLZ8	72.4	0.000000000000127	N/A	N/A
eggNOG-mapper	UHGV-0172082_58	1567010.A0A0A7RU90_9VIRU	67.0	0.00000000000741	protein disulfide oxidoreductase activity	N/A
structural_annotation	UHGV-0172082_58	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-0172082_59	phrog_21498	95.1	8.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0172082_59	78346.BRUM_0376	117.0	2.08e-31	DNA binding	N/A
COG	UHGV-0172082_59	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A