UHGV-0172149 (vOTU-010870)

Viral Genome: UHGV-0172149

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0172149
vOTU ID	vOTU-010870
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_587045
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9743
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.7
Jumbo phage	No

Genome content
Genome length (bp)	30,056
GC content	54.09%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	93%
Average CDS length (bps)	569.51
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0172149_1	K07451	40.3	0.000000000055	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0172149_1	phrog_119	74.4	1.6e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172149_1	UniRef90_U4QWM3	122.0	1.83e-34	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0172149_1	588581.Cpap_1277	122.0	4.36e-35	HNH nucleases	N/A
COG	UHGV-0172149_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0172149_1	TIGR02646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172149_2	UniRef90_UPI001D014F8E	67.0	0.000000000000234	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0172149_2	1226322.HMPREF1545_00110	63.9	0.000000000000827	Cysteine-rich KTR	N/A
structural_annotation	UHGV-0172149_2	PF14205,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0172149_3	phrog_3584	155.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0172149_3	1203606.HMPREF1526_00985	170.0	0	N/A	N/A
structural_annotation	UHGV-0172149_3	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0172149_6	phrog_5781	99.3	4.2e-29	N/A	unknown function
UniRef90	UHGV-0172149_6	UniRef90_A0A2V2FSM6	108.0	1.69e-28	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0172149_6	573061.Clocel_3558	95.1	3.81e-24	N/A	N/A
Pfam	UHGV-0172149_6	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0172149_6	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0172149_6	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172149_7	1232449.BAHV02000018_gene1537	135.0	3.2e-39	N/A	N/A
eggNOG-mapper	UHGV-0172149_8	1235835.C814_01168	62.8	0.00000000000181	N/A	N/A
PHROG	UHGV-0172149_10	phrog_38832	61.9	6.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0172149_10	1232443.BAIA02000078_gene48	60.8	0.00000000152	N/A	N/A
PHROG	UHGV-0172149_14	phrog_1384	128.7	4.2e-38	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0172149_14	428125.CLOLEP_01816	271.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0172149_14	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
KOfam	UHGV-0172149_15	K00558	168.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0172149_15	phrog_116	210.2	0	DNA methyltransferase	other
UniRef90	UHGV-0172149_15	UniRef90_A0A316NA61	358.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0172149_15	718252.FP2_16350	343.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0172149_15	oMTase_00004	210.9	0	orphan methyltransferase	RM
Pfam	UHGV-0172149_15	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0172149_15	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0172149_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0172149_16	phrog_8470	78.0	1.2e-22	N/A	unknown function
UniRef90	UHGV-0172149_16	UniRef90_UPI00195A65BE	141.0	1.68e-33	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0172149_16	1378168.N510_01842	130.0	2.67e-30	PcfJ-like protein	N/A
PHROG	UHGV-0172149_17	phrog_38338	77.5	2.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0172149_17	693746.OBV_25410	113.0	6.23e-31	N/A	N/A
PHROG	UHGV-0172149_20	phrog_30550	130.2	1.5e-38	N/A	unknown function
UniRef90	UHGV-0172149_20	UniRef90_A0A374A8M2	74.3	0.000000000000301	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0172149_20	1519439.JPJG01000077_gene920	74.3	0.00000000000000726	Cell Wall Hydrolase	N/A
structural_annotation	UHGV-0172149_20	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172149_21	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172149_22	UniRef90_A0A1H3YVB4	63.9	0.00000000000683	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0172149_22	320850.Q4ZA66_9CAUD	53.1	0.0000000182	N/A	N/A
structural_annotation	UHGV-0172149_22	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0172149_24	K22300	70.3	4.2e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0172149_24	phrog_8	53.0	0.0000000000000085	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172149_24	UniRef90_A0A1Q6RKG1	154.0	1.4013e-45	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0172149_24	748224.HMPREF9436_01444	110.0	2.86e-29	N/A	N/A
PADLOC	UHGV-0172149_24	retron_type_VI_hth_cluster2_1	43.0	0.000000000012	N/A	Retron
Pfam	UHGV-0172149_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172149_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0172149_24	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0172149_26	K02342	151.0	8.40779e-45	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0172149_26	phrog_192	140.8	2.40042e-42	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172149_26	UniRef90_R5B344	237.0	0	Exonuclease	N/A
eggNOG-mapper	UHGV-0172149_26	1203606.HMPREF1526_00999	197.0	0	EXOIII	N/A
PADLOC	UHGV-0172149_26	cd06127	120.3	2.2e-35	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0172149_26	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0172149_26	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0172149_26	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
Pfam	UHGV-0172149_27	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0172149_27	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0172149_28	K14059	103.1	4.4e-30	int; integrase	N/A
PHROG	UHGV-0172149_28	phrog_1	119.0	5.7e-35	integrase	integration and excision
UniRef90	UHGV-0172149_28	UniRef90_R6I1Y0	475.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0172149_28	478749.BRYFOR_05407	95.9	3.53e-19	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0172149_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0172149_28	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0172149_28	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0172149_32	phrog_25567	44.8	0.0000000000017	N/A	unknown function
UniRef90	UHGV-0172149_32	UniRef90_UPI00164AED9E	101.0	9.38e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0172149_32	1235798.C817_04600	68.6	0.000000000000158	N/A	N/A
structural_annotation	UHGV-0172149_32	NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0172149_33	phrog_199	65.8	5.5e-19	holin	lysis
UniRef90	UHGV-0172149_33	UniRef90_R5AT18	140.0	5.72999e-40	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0172149_33	1121344.JHZO01000003_gene684	129.0	3.37e-36	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0172149_33	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0172149_33	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0172149_33	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0172149_33	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0172149_34	K01448	57.6	2.1e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0172149_34	phrog_435	81.6	1.5e-23	endolysin	lysis
UniRef90	UHGV-0172149_34	UniRef90_A0A1Q6RJT5	353.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0172149_34	1297617.JPJD01000020_gene325	73.6	0.000000000000804	Bacterial SH3 domain	N/A
Pfam	UHGV-0172149_34	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0172149_34	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0172149_34	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172149_36	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0172149_37	phrog_23464	313.7	0	N/A	unknown function
UniRef90	UHGV-0172149_37	UniRef90_UPI00189782F4	273.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0172149_37	665950.HMPREF1025_02660	265.0	0	phage tail tape measure protein	N/A
COG	UHGV-0172149_37	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0172149_40	phrog_88	65.4	9.8e-19	major tail protein	tail
UniRef90	UHGV-0172149_40	UniRef90_R5EB96	189.0	0	Phage major tail protein phi13 family	N/A
structural_annotation	UHGV-0172149_40	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172149_41	1203606.HMPREF1526_00974	72.0	0.0000000000000555	N/A	N/A
structural_annotation	UHGV-0172149_41	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172149_42	PF11367,MF_00632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172149_43	349161.Dred_2602	53.5	0.000000139	N/A	N/A
structural_annotation	UHGV-0172149_43	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0172149_45	phrog_10	165.1	0	major head protein	head and packaging
UniRef90	UHGV-0172149_45	UniRef90_A0A7C6PQI0	365.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0172149_45	642492.Clole_0744	355.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0172149_45	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0172149_45	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0172149_45	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0172149_45	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0172149_46	K06904	130.9	1.4e-38	N/A	N/A
PHROG	UHGV-0172149_46	phrog_80	149.3	3.36312e-44	head maturation protease	head and packaging
UniRef90	UHGV-0172149_46	UniRef90_A0A3D1VA27	175.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0172149_46	1232446.BAIE02000002_gene825	151.0	7.28675e-44	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0172149_46	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0172149_46	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0172149_46	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0172149_46	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0172149_47	phrog_12	121.3	7.5e-36	portal protein	head and packaging
UniRef90	UHGV-0172149_47	UniRef90_R5ENV9	326.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0172149_47	358681.BBR47_29150	318.0	0	Phage portal protein	N/A
Pfam	UHGV-0172149_47	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0172149_47	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0172149_47	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0172149_47	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0172149_48	phrog_9	226.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0172149_48	UniRef90_R5EM34	721.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0172149_48	588581.Cpap_1275	538.0	0	Phage Terminase	N/A
Pfam	UHGV-0172149_48	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0172149_48	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0172149_48	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0172149_48	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
Pfam	UHGV-0172149_49	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0172149_49	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A