UHGV-0172346 (vOTU-002843)

Viral Genome: UHGV-0172346

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0172346
vOTU ID	vOTU-002843
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_585708
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9822
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.2
Jumbo phage	No

Genome content
Genome length (bp)	38,411
GC content	54.17%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	95%
Average CDS length (bps)	543.40
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0172346_2	phrog_15594	67.0	2.7e-19	N/A	unknown function
structural_annotation	UHGV-0172346_2	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_3	phrog_918	120.1	7.1e-36	N/A	unknown function
UniRef90	UHGV-0172346_3	UniRef90_UPI000E468F85	127.0	2.28e-36	N/A	N/A
eggNOG-mapper	UHGV-0172346_3	1140001.I571_01827	114.0	3.86e-32	N/A	N/A
Pfam	UHGV-0172346_3	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0172346_3	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_4	phrog_881	85.7	3e-25	holin	lysis
UniRef90	UHGV-0172346_4	UniRef90_A0A4Q7P349	115.0	2.51e-32	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0172346_4	742740.HMPREF9474_02251	114.0	9.22e-33	Putative phage holin Dp-1	N/A
Pfam	UHGV-0172346_4	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0172346_4	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_5	phrog_1863	55.6	6.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0172346_5	1235797.C816_02840	94.0	1.13e-23	N/A	N/A
PHROG	UHGV-0172346_6	phrog_372	215.9	0	tail protein	tail
UniRef90	UHGV-0172346_6	UniRef90_R7FHU8	189.0	0	Tail protein	N/A
eggNOG-mapper	UHGV-0172346_6	1211844.CBLM010000023_gene977	96.3	1.04e-17	N/A	N/A
Pfam	UHGV-0172346_6	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0172346_6	PF05895,MF_00791,NF010681,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_7	phrog_6616	409.4	0	tail protein	tail
UniRef90	UHGV-0172346_7	UniRef90_A0A3D3U8S7	380.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0172346_7	33035.JPJF01000043_gene1002	286.0	0	N/A	N/A
PHROG	UHGV-0172346_8	phrog_1194	70.0	3.4e-20	N/A	unknown function
structural_annotation	UHGV-0172346_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_9	phrog_1535	145.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0172346_9	1232453.BAIF02000058_gene1637	87.0	0.0000000000000302	phage tail tape measure protein	N/A
COG	UHGV-0172346_9	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0172346_10	phrog_706	110.4	1.8e-32	N/A	unknown function
UniRef90	UHGV-0172346_10	UniRef90_A0A173TZF2	211.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0172346_10	411459.RUMOBE_01383	179.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0172346_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0172346_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_11	phrog_11299	89.9	2.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0172346_11	411459.RUMOBE_01382	85.5	2.31e-19	N/A	N/A
structural_annotation	UHGV-0172346_11	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_12	phrog_3099	137.3	9.49996e-41	N/A	unknown function
eggNOG-mapper	UHGV-0172346_12	1304866.K413DRAFT_3043	172.0	0	N/A	N/A
structural_annotation	UHGV-0172346_12	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_13	phrog_3266	64.8	1.3e-18	tail completion	connector
eggNOG-mapper	UHGV-0172346_13	693746.OBV_18140	175.0	0	N/A	N/A
structural_annotation	UHGV-0172346_13	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_14	phrog_556	53.7	0.0000000000000033	minor head protein	head and packaging
UniRef90	UHGV-0172346_14	UniRef90_UPI001F06267A	73.2	0.000000000000169	minor capsid protein	N/A
eggNOG-mapper	UHGV-0172346_14	33035.JPJF01000106_gene3128	67.4	0.00000000000527	N/A	N/A
Pfam	UHGV-0172346_14	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0172346_14	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172346_15	PF20536,MF_01370,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_16	phrog_541	59.8	5.2e-17	head-tail adaptor	connector
eggNOG-mapper	UHGV-0172346_16	693746.OBV_18110	120.0	1.24e-33	N/A	N/A
PHROG	UHGV-0172346_18	phrog_422	229.9	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0172346_18	693746.OBV_18090	436.0	0	N/A	N/A
structural_annotation	UHGV-0172346_18	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_19	phrog_194	75.1	1.3e-21	head scaffolding protein	head and packaging
UniRef90	UHGV-0172346_19	UniRef90_UPI00164D9F94	234.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0172346_19	693746.OBV_18080	189.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0172346_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0172346_19	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_21	phrog_581	230.9	0	minor head protein	head and packaging
UniRef90	UHGV-0172346_21	UniRef90_UPI0006814CA4	473.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0172346_21	693746.OBV_18050	488.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0172346_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0172346_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172346_21	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_22	phrog_533	191.5	0	portal protein	head and packaging
UniRef90	UHGV-0172346_22	UniRef90_UPI000680A1DB	550.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0172346_22	693746.OBV_18040	386.0	0	N/A	N/A
structural_annotation	UHGV-0172346_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0172346_24	K06909	121.0	1.4e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0172346_24	phrog_10250	161.1	0	N/A	unknown function
UniRef90	UHGV-0172346_24	UniRef90_A0A3D3Y0N9	593.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0172346_24	1226322.HMPREF1545_00043	560.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0172346_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0172346_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0172346_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0172346_24	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172346_25	UniRef90_UPI0009523D83	138.0	2.8e-39	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0172346_25	1226322.HMPREF1545_00042	134.0	1.54e-38	N/A	N/A
structural_annotation	UHGV-0172346_25	PF13542	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_26	phrog_36	57.5	3.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172346_26	UniRef90_UPI001C10AB33	112.0	3.93e-29	N/A	N/A
eggNOG-mapper	UHGV-0172346_26	580331.Thit_1400	85.9	2.29e-19	N/A	N/A
structural_annotation	UHGV-0172346_26	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_34	phrog_9572	46.1	0.00000000000055	sulfatase-modifying factor enzyme	other
eggNOG-mapper	UHGV-0172346_34	742735.HMPREF9467_00919	70.5	0.000000000000188	N/A	N/A
PHROG	UHGV-0172346_35	phrog_355	57.2	3.1e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172346_35	UniRef90_A0A415G5B2	142.0	6.01017e-42	N/A	N/A
eggNOG-mapper	UHGV-0172346_35	397290.C810_05229	142.0	7.77721e-43	N/A	N/A
Pfam	UHGV-0172346_35	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0172346_35	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_37	phrog_5781	84.1	1.9e-24	N/A	unknown function
UniRef90	UHGV-0172346_37	UniRef90_A0A2V2FSM6	123.0	1.69e-34	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0172346_37	573061.Clocel_3558	94.4	9.26e-24	N/A	N/A
Pfam	UHGV-0172346_37	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0172346_37	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0172346_37	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0172346_39	K00390	87.2	1.4e-25	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0172346_39	phrog_424	119.1	3.4e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0172346_39	UniRef90_UPI001D087498	407.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0172346_39	1408437.JNJN01000032_gene2312	334.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-0172346_39	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0172346_39	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0172346_39	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_40	phrog_4433	205.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0172346_40	665950.HMPREF1025_01373	107.0	1.43e-24	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0172346_40	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0172346_40	NF007410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172346_41	UniRef90_UPI001C01A488	183.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0172346_41	561177.ANHYDRO_01396	97.1	4.37e-24	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0172346_41	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0172346_41	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_42	phrog_1408	75.7	4.1e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0172346_42	742740.HMPREF9474_03117	180.0	0	N/A	N/A
structural_annotation	UHGV-0172346_42	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0172346_43	K03111	149.3	4.06377e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0172346_43	phrog_44	145.7	2.90069e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172346_43	UniRef90_A0A1C5QDM6	175.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0172346_43	1226322.HMPREF1545_04080	175.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0172346_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0172346_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0172346_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0172346_43	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0172346_43	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_44	phrog_72	59.0	4.5e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172346_44	UniRef90_A0A2Z4Q9W9	130.0	3.74e-35	NinB	N/A
eggNOG-mapper	UHGV-0172346_44	445972.ANACOL_01825	127.0	2.07e-34	N/A	N/A
structural_annotation	UHGV-0172346_44	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_45	phrog_27776	96.3	3.5e-28	N/A	unknown function
UniRef90	UHGV-0172346_45	UniRef90_A0A6H1ZE89	124.0	2.31e-32	Putative tail protein	N/A
eggNOG-mapper	UHGV-0172346_45	1382356.JQMP01000004_gene51	122.0	2.11e-32	N/A	N/A
structural_annotation	UHGV-0172346_45	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
Pfam	UHGV-0172346_49	PF04448	N/A	N/A	N/A	DUF551
UniRef90	UHGV-0172346_51	UniRef90_UPI000F0633F9	80.9	9.86e-19	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0172346_51	1235835.C814_03153	71.2	0.00000000000000128	N/A	N/A
structural_annotation	UHGV-0172346_51	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172346_56	UniRef90_UPI0018C81604	63.9	0.00000000000529	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0172346_56	718252.FP2_06860	62.8	0.00000000000224	N/A	N/A
Pfam	UHGV-0172346_56	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0172346_56	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0172346_57	K22300	66.7	5.2e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0172346_57	phrog_8	57.7	3.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172346_57	UniRef90_UPI00047CA4D8	86.7	3.57e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0172346_57	1262914.BN533_01956	91.7	4.24e-22	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0172346_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172346_57	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0172346_57	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0172346_58	K07449	99.4	3e-29	K07449; similar to archaeal holliday junction resolvase and Mrr protein	N/A
PHROG	UHGV-0172346_58	phrog_13700	66.5	4.1e-19	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0172346_58	UniRef90_A0A564WRV4	154.0	2.53004e-41	DNA translocase FtsK	N/A
eggNOG-mapper	UHGV-0172346_58	689781.AUJX01000015_gene1540	132.0	8.27e-36	restriction endonuclease	N/A
PADLOC	UHGV-0172346_58	ZorD1_00005	62.7	5.2e-18	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0172346_58	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
Pfam	UHGV-0172346_58	PF09397	N/A	N/A	Ftsk gamma domain	FtsK_gamma
COG	UHGV-0172346_58	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
Pfam	UHGV-0172346_60	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0172346_60	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0172346_61	K14059	131.7	1e-38	int; integrase	N/A
PHROG	UHGV-0172346_61	phrog_1	156.2	0	integrase	integration and excision
UniRef90	UHGV-0172346_61	UniRef90_A0A810Q0Y2	391.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0172346_61	693746.OBV_43340	379.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0172346_61	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0172346_61	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0172346_61	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172346_65	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0172346_66	phrog_21357	104.5	8.8e-31	endolysin	lysis
UniRef90	UHGV-0172346_66	UniRef90_A0A4D7AVW6	244.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0172346_66	97139.C824_00684	236.0	0	lysozyme activity	N/A
Pfam	UHGV-0172346_66	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0172346_66	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0172346_66	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0172346_66	PF01471,PF10030,TIGR02594,NF038080,COG3409,COG3942	N/A	N/A	N/A	N/A
KOfam	UHGV-0172346_67	K17256	46.8	0.000000000000032	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	N/A
PHROG	UHGV-0172346_67	phrog_35892	111.5	0	N/A	unknown function
Pfam	UHGV-0172346_67	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
Pfam	UHGV-0172346_67	PF13855	N/A	N/A	Leucine rich repeat	LRR_8
structural_annotation	UHGV-0172346_67	PF13306,NF041351	N/A	N/A	N/A	N/A