UHGV-0172349 (vOTU-167200)

Viral Genome: UHGV-0172349

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0172349
vOTU ID	vOTU-167200
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_585716
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.95 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9823
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.07
Jumbo phage	No

Genome content
Genome length (bp)	22,840
GC content	53.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	91%
Average CDS length (bps)	495.29
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.95)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0172349_1	phrog_13879	175.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0172349_1	1122919.KB905559_gene1344	154.0	2.32e-38	N/A	N/A
structural_annotation	UHGV-0172349_1	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0172349_2	phrog_18725	103.6	1.8e-30	N/A	unknown function
eggNOG-mapper	UHGV-0172349_2	693746.OBV_18220	132.0	4.42e-37	N/A	N/A
Pfam	UHGV-0172349_3	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-0172349_3	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
Pfam	UHGV-0172349_4	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-0172349_4	COG4447	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172349_4	PF07484	N/A	N/A	N/A	N/A
PHROG	UHGV-0172349_7	phrog_355	59.1	8.2e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172349_7	UniRef90_UPI0019572D92	149.0	5.60519e-45	N/A	N/A
eggNOG-mapper	UHGV-0172349_7	397290.C810_05229	139.0	1.56007e-41	N/A	N/A
structural_annotation	UHGV-0172349_7	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-0172349_8	phrog_6918	96.4	1.9e-28	holin	lysis
UniRef90	UHGV-0172349_8	UniRef90_A0A316QCY7	103.0	8.58e-27	Holin	N/A
eggNOG-mapper	UHGV-0172349_8	1297617.JPJD01000020_gene301	102.0	6e-27	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0172349_8	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0172349_8	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0172349_9	phrog_14030	144.3	8.00141e-43	N/A	unknown function
UniRef90	UHGV-0172349_9	UniRef90_R6LL81	248.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0172349_9	1121866.AUGK01000003_gene1444	91.7	1.76e-18	amidase activity	N/A
COG	UHGV-0172349_9	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0172349_10	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172349_12	411467.BACCAP_02633	57.0	0.000000253	N/A	N/A
structural_annotation	UHGV-0172349_12	PF17375	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172349_13	UniRef90_UPI00164AED9E	87.0	6.27e-20	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0172349_13	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0172349_13	PF13560,NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0172349_14	phrog_3754	84.6	1.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0172349_14	476272.RUMHYD_01764	160.0	0	N/A	N/A
PHROG	UHGV-0172349_15	phrog_21718	103.9	1.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-0172349_15	397290.C810_05210	62.0	0.000000000816	N/A	N/A
PHROG	UHGV-0172349_16	phrog_22984	76.2	1.6e-22	N/A	unknown function
PHROG	UHGV-0172349_17	phrog_16490	128.6	1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0172349_17	1408437.JNJN01000043_gene803	135.0	2.42e-36	N/A	N/A
PHROG	UHGV-0172349_18	phrog_20016	195.4	0	N/A	unknown function
UniRef90	UHGV-0172349_18	UniRef90_A0A285PT46	187.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0172349_18	1226322.HMPREF1545_00077	169.0	0	N/A	N/A
structural_annotation	UHGV-0172349_18	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172349_19	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172349_20	1226322.HMPREF1545_00079	108.0	2.8e-29	N/A	N/A
KOfam	UHGV-0172349_21	K14059	129.6	4.3e-38	int; integrase	N/A
PHROG	UHGV-0172349_21	phrog_1	144.6	9.09443e-43	integrase	integration and excision
UniRef90	UHGV-0172349_21	UniRef90_UPI00195CC1EE	379.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0172349_21	1235835.C814_03141	193.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0172349_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0172349_21	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0172349_21	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172349_22	UniRef90_A0A8D9UHA6	80.1	0.00000000000000137	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0172349_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172349_22	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0172349_22	PF12844	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172349_24	1298920.KI911353_gene413	142.0	1.56e-39	N/A	N/A
Pfam	UHGV-0172349_24	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
Pfam	UHGV-0172349_24	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
eggNOG-mapper	UHGV-0172349_27	476272.RUMHYD_03309	64.3	0.00000000000668	N/A	N/A
structural_annotation	UHGV-0172349_27	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0172349_28	phrog_8	44.3	0.0000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172349_28	UniRef90_UPI001E54DE4F	87.8	2.23e-20	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0172349_28	1378168.N510_01712	68.2	0.00000000000282	N/A	N/A
Pfam	UHGV-0172349_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0172349_28	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172349_29	UniRef90_A0A1C7FQD9	88.2	1.63e-21	Transcriptional regulator	N/A
Pfam	UHGV-0172349_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0172349_29	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172349_30	1235835.C814_03153	74.7	5.02e-17	N/A	N/A
structural_annotation	UHGV-0172349_30	PF09035,NF040990	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172349_31	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172349_34	PF14634	N/A	N/A	N/A	N/A
KOfam	UHGV-0172349_35	K24213	42.5	0.000000000007	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0172349_35	phrog_4433	63.0	1.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0172349_35	445970.ALIPUT_01221	92.4	3.6e-18	DNA-templated transcription, initiation	N/A
Pfam	UHGV-0172349_35	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0172349_35	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0172349_35	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0172349_36	phrog_124	112.4	4.3e-33	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172349_36	UniRef90_A0A2Z4QBI4	389.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-0172349_36	445972.ANACOL_00146	227.0	0	AAA domain	N/A
Pfam	UHGV-0172349_36	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0172349_36	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-0172349_36	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172349_37	UniRef90_A0A2Z4QA33	241.0	0	PD-(D/E)XK nuclease	N/A
eggNOG-mapper	UHGV-0172349_37	718252.FP2_01050	132.0	8.25e-36	N/A	N/A
structural_annotation	UHGV-0172349_37	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0172349_38	phrog_378	95.9	5.3e-28	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172349_38	UniRef90_UPI001E43F9BA	71.2	0.00000000000111	N/A	N/A
eggNOG-mapper	UHGV-0172349_38	1423732.BALS01000134_gene393	65.5	0.0000000000437	N/A	N/A
structural_annotation	UHGV-0172349_38	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-0172349_39	phrog_16304	56.7	3.6e-16	N/A	unknown function
UniRef90	UHGV-0172349_39	UniRef90_A0A3D3Y5P0	218.0	0	N/A	N/A
Pfam	UHGV-0172349_39	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0172349_39	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0172349_41	phrog_9298	62.9	4.1e-18	radical SAM domain protein	other
UniRef90	UHGV-0172349_41	UniRef90_A0A841L4D7	309.0	0	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	N/A
eggNOG-mapper	UHGV-0172349_41	742817.HMPREF9449_01796	288.0	0	radical SAM domain protein	N/A
COG	UHGV-0172349_41	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0172349_41	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172349_42	UniRef90_UPI001C10265C	84.7	4.36e-19	N/A	N/A
Pfam	UHGV-0172349_42	PF04448	N/A	N/A	N/A	DUF551