UHGV-0172684 (vOTU-065460)

Viral Genome: UHGV-0172684

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0172684
vOTU ID	vOTU-065460
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_582231
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.46 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9824
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.05
Jumbo phage	No

Genome content
Genome length (bp)	42,996
GC content	41.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	92%
Average CDS length (bps)	606.09
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-0172684_1	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
PHROG	UHGV-0172684_2	phrog_155	143.7	1.10002e-42	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172684_2	UniRef90_A0A1V5UPJ3	183.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0172684_2	386415.NT01CX_2192	173.0	0	ERF superfamily	N/A
Pfam	UHGV-0172684_2	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0172684_2	PF04404,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172684_3	UniRef90_R6RDX0	80.1	1.83e-18	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-0172684_4	phrog_253	114.8	7.1e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172684_4	UniRef90_UPI001030DCF8	178.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0172684_4	411470.RUMGNA_02192	171.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-0172684_4	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0172684_4	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_9	phrog_6058	54.2	0.0000000000000015	N/A	unknown function
UniRef90	UHGV-0172684_9	UniRef90_A0A2V1JQ38	60.8	0.000000000528	Glycogen synthase	N/A
eggNOG-mapper	UHGV-0172684_9	742733.HMPREF9469_05094	58.9	0.000000000501	N/A	N/A
structural_annotation	UHGV-0172684_10	COG1321	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172684_11	UniRef90_A0A396QAC5	104.0	8.72e-28	N/A	N/A
eggNOG-mapper	UHGV-0172684_11	411470.RUMGNA_03231	103.0	3.75e-28	N/A	N/A
Pfam	UHGV-0172684_11	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0172684_11	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0172684_11	PF05339,MF_00535,NF002773,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_12	phrog_2967	49.8	0.000000000000064	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172684_12	UniRef90_UPI001D029144	162.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0172684_12	457412.RSAG_00795	120.0	3e-33	sequence-specific DNA binding	N/A
COG	UHGV-0172684_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0172684_12	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172684_14	UniRef90_UPI001896C517	389.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0172684_14	1160721.RBI_I01524	122.0	4.57e-29	N/A	N/A
Pfam	UHGV-0172684_14	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
structural_annotation	UHGV-0172684_14	PF02368,PF11611,PF21461,MF_00791,NF003967,NF005261,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0172684_15	K14059	97.8	1.7e-28	int; integrase	N/A
PHROG	UHGV-0172684_15	phrog_1	121.4	9.4e-36	integrase	integration and excision
UniRef90	UHGV-0172684_15	UniRef90_A0A6L8SXX0	612.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0172684_15	1235792.C808_05256	363.0	0	Belongs to the 'phage' integrase family	N/A
COG	UHGV-0172684_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0172684_15	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0172684_16	K07273	184.9	0	acm; lysozyme	N/A
PHROG	UHGV-0172684_16	phrog_6745	195.7	0	endolysin	lysis
UniRef90	UHGV-0172684_16	UniRef90_A0A412SB50	907.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0172684_16	476272.RUMHYD_02876	348.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0172684_16	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0172684_16	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0172684_16	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0172684_16	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0172684_16	PF01183,PF18342,PF14603,NF040678,TIGR04303,COG3757,COG3807	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172684_17	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-0172684_19	K19719	120.4	3.5e-36	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0172684_19	phrog_819	151.1	0	tail protein	tail
UniRef90	UHGV-0172684_19	UniRef90_A0A416SLH3	1121.0	0	Collagen-like protein	N/A
eggNOG-mapper	UHGV-0172684_19	1519439.JPJG01000060_gene1894	114.0	1.63e-25	N/A	N/A
Pfam	UHGV-0172684_19	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0172684_19	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0172684_19	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0172684_19	PF19789,PF16323,COG2033	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_20	phrog_18444	77.9	8.5e-23	N/A	unknown function
PHROG	UHGV-0172684_21	phrog_6616	539.6	0	tail protein	tail
UniRef90	UHGV-0172684_21	UniRef90_A0A352BLY8	518.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0172684_21	33035.JPJF01000043_gene1002	219.0	0	N/A	N/A
structural_annotation	UHGV-0172684_21	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_22	phrog_1194	85.1	6.1e-25	N/A	unknown function
structural_annotation	UHGV-0172684_22	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_23	phrog_1535	555.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0172684_23	UniRef90_A0A173R880	478.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0172684_23	476272.RUMHYD_01785	477.0	0	phage tail tape measure protein	N/A
COG	UHGV-0172684_23	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172684_23	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_24	phrog_706	129.0	3.4e-38	N/A	unknown function
UniRef90	UHGV-0172684_24	UniRef90_UPI001BAD00AD	207.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0172684_24	411459.RUMOBE_01383	345.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0172684_24	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0172684_24	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_25	phrog_11299	63.2	5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0172684_25	411459.RUMOBE_01382	56.6	0.0000000317	N/A	N/A
structural_annotation	UHGV-0172684_25	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_26	phrog_3099	132.2	3.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0172684_26	411902.CLOBOL_00129	171.0	0	N/A	N/A
structural_annotation	UHGV-0172684_26	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_27	phrog_3266	93.6	1.6e-27	tail completion	connector
eggNOG-mapper	UHGV-0172684_27	476272.RUMHYD_01781	145.0	2.9105e-42	N/A	N/A
structural_annotation	UHGV-0172684_27	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_28	phrog_556	61.8	8.5e-18	minor head protein	head and packaging
UniRef90	UHGV-0172684_28	UniRef90_UPI000E4989EB	291.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0172684_28	476272.RUMHYD_01780	157.0	0	N/A	N/A
Pfam	UHGV-0172684_28	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0172684_28	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_29	phrog_3366	88.6	6.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0172684_29	476272.RUMHYD_01779	151.0	7.00649e-45	N/A	N/A
structural_annotation	UHGV-0172684_29	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_30	phrog_1129	75.2	6.1e-22	holin	lysis
UniRef90	UHGV-0172684_30	UniRef90_A0A395X7B2	172.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0172684_30	411461.DORFOR_00721	111.0	4.16e-31	N/A	N/A
Pfam	UHGV-0172684_30	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0172684_30	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_31	phrog_774	65.3	1.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0172684_31	397290.C810_05225	138.0	1.16994e-41	N/A	N/A
PHROG	UHGV-0172684_32	phrog_541	94.4	8.2e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0172684_32	476272.RUMHYD_01778	115.0	1.1e-30	N/A	N/A
PHROG	UHGV-0172684_33	phrog_544	167.5	0	major head protein	head and packaging
UniRef90	UHGV-0172684_33	UniRef90_A0A395X7A1	731.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0172684_33	1232453.BAIF02000011_gene3359	389.0	0	N/A	N/A
Pfam	UHGV-0172684_33	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0172684_33	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_34	phrog_194	67.7	2.3e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0172684_34	UniRef90_UPI001D14C9C8	185.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0172684_34	476272.RUMHYD_01775	201.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0172684_34	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0172684_35	phrog_28802	228.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0172684_35	476272.RUMHYD_01772	198.0	0	N/A	N/A
PHROG	UHGV-0172684_36	phrog_20016	206.1	0	N/A	unknown function
UniRef90	UHGV-0172684_36	UniRef90_A0A285PT46	166.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0172684_36	397290.C810_05214	184.0	0	N/A	N/A
structural_annotation	UHGV-0172684_36	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_37	phrog_16490	184.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0172684_37	397290.C810_01328	134.0	4.81e-35	N/A	N/A
PHROG	UHGV-0172684_38	phrog_22984	96.9	1.1e-28	N/A	unknown function
PHROG	UHGV-0172684_39	phrog_21718	131.6	3.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-0172684_39	476272.RUMHYD_01768	127.0	1.3e-35	N/A	N/A
UniRef90	UHGV-0172684_40	UniRef90_A0A395X7A4	182.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0172684_40	476272.RUMHYD_01766	120.0	3.06e-34	N/A	N/A
PHROG	UHGV-0172684_41	phrog_3754	116.1	2.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-0172684_41	476272.RUMHYD_01764	170.0	0	N/A	N/A
PHROG	UHGV-0172684_42	phrog_581	254.8	0	minor head protein	head and packaging
UniRef90	UHGV-0172684_42	UniRef90_A0A395X791	697.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0172684_42	33035.JPJF01000106_gene3134	384.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0172684_42	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0172684_42	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172684_42	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172684_43	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_46	phrog_533	286.5	0	portal protein	head and packaging
UniRef90	UHGV-0172684_46	UniRef90_A0A1C6CDM8	708.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0172684_46	33035.JPJF01000106_gene3135	543.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0172684_46	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172684_47	411473.RUMCAL_02525	143.0	5.53513e-43	N/A	N/A
KOfam	UHGV-0172684_48	K06909	386.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0172684_48	phrog_3717	148.8	2.38221e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0172684_48	UniRef90_A0A6L8SYJ6	894.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0172684_48	33035.JPJF01000106_gene3136	505.0	0	Terminase small subunit	N/A
Pfam	UHGV-0172684_48	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0172684_48	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0172684_48	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0172684_48	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0172684_48	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172684_52	1235799.C818_02666	76.3	0.0000000000000402	N/A	N/A
structural_annotation	UHGV-0172684_52	PF11302	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_54	phrog_8684	98.2	2.2e-29	N/A	unknown function
UniRef90	UHGV-0172684_54	UniRef90_A0A1C6K9I9	208.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-0172684_54	411470.RUMGNA_02199	91.7	1.8e-21	N/A	N/A
Pfam	UHGV-0172684_54	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0172684_54	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0172684_54	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_55	phrog_20593	51.5	0.000000000000016	N/A	unknown function
UniRef90	UHGV-0172684_56	UniRef90_A0A395XB56	121.0	7.18e-33	N/A	N/A
Pfam	UHGV-0172684_56	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0172684_60	K00558	231.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0172684_60	phrog_116	259.6	0	DNA methyltransferase	other
UniRef90	UHGV-0172684_60	UniRef90_C0BC27	681.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0172684_60	1499683.CCFF01000017_gene2594	464.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0172684_60	MTase_II_00058	244.9	0	Type II methyltransferase	RM
Pfam	UHGV-0172684_60	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0172684_60	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0172684_60	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0172684_60	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172684_63	UniRef90_A0A6L8SWV5	174.0	0	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0172684_63	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
COG	UHGV-0172684_63	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0172684_63	PF01726,COG0640	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172684_64	NF010187	N/A	N/A	N/A	N/A
PHROG	UHGV-0172684_65	phrog_8841	239.5	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172684_65	UniRef90_UPI0009B7CC65	332.0	0	N/A	N/A
eggNOG-mapper	UHGV-0172684_65	476272.RUMHYD_01742	362.0	0	N/A	N/A
Pfam	UHGV-0172684_65	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0172684_65	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0172684_65	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172684_65	PF18662,COG5519	N/A	N/A	N/A	N/A