UHGV-0172705 (vOTU-120514)

Viral Genome: UHGV-0172705

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0172705
vOTU ID	vOTU-120514
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_589387
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.39 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.2
Jumbo phage	No

Genome content
Genome length (bp)	25,536
GC content	38.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	31
CDS density	95%
Average CDS length (bps)	780.77
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.39)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0172705_1	K07727	46.0	0.0000000000014	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0172705_1	UniRef90_UPI001BA79D8F	131.0	1.03e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0172705_1	877411.JMMA01000002_gene1483	60.5	0.0000000000217	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0172705_1	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
PHROG	UHGV-0172705_3	phrog_374	75.8	9.7e-40	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172705_3	UniRef90_A0A173U068	225.0	0	AP2 domain	N/A
eggNOG-mapper	UHGV-0172705_3	1437363.A0A090C6M5_9CAUD	150.0	1.78946e-42	HNH endonuclease	N/A
Pfam	UHGV-0172705_3	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-0172705_3	PF18337,PF00847	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_4	phrog_606	83.9	2.1e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0172705_4	UniRef90_UPI0004BAB6EB	129.0	7.89e-36	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0172705_4	397290.C810_05185	132.0	3.41e-37	DNA-packaging protein gp3	N/A
Pfam	UHGV-0172705_4	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0172705_4	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0172705_5	K06909	317.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0172705_5	phrog_3717	155.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0172705_5	UniRef90_UPI00156DBE69	777.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0172705_5	397291.C804_01612	377.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0172705_5	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0172705_5	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0172705_5	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0172705_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0172705_5	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_7	phrog_533	260.2	0	portal protein	head and packaging
UniRef90	UHGV-0172705_7	UniRef90_A0A173TY48	881.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0172705_7	33035.JPJF01000106_gene3135	446.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0172705_7	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_9	phrog_581	263.0	0	minor head protein	head and packaging
UniRef90	UHGV-0172705_9	UniRef90_A0A173TY40	793.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0172705_9	33035.JPJF01000106_gene3134	409.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0172705_9	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0172705_9	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172705_9	PF06152	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172705_10	UniRef90_A0A417UWY7	193.0	0	CTP synthase	N/A
PHROG	UHGV-0172705_11	phrog_918	116.7	8e-35	N/A	unknown function
UniRef90	UHGV-0172705_11	UniRef90_UPI00195F2652	142.0	2.05991e-42	N/A	N/A
eggNOG-mapper	UHGV-0172705_11	1225795.K4I1W7_9CAUD	123.0	7.02e-36	N/A	N/A
Pfam	UHGV-0172705_11	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0172705_11	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_12	phrog_1048	182.1	0	N/A	unknown function
UniRef90	UHGV-0172705_12	UniRef90_UPI00156DCDC3	347.0	0	N/A	N/A
eggNOG-mapper	UHGV-0172705_12	457412.RSAG_01107	256.0	0	N/A	N/A
Pfam	UHGV-0172705_12	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0172705_12	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0172705_12	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_14	phrog_419	100.4	2.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-0172705_14	358220.C380_08880	96.7	2.37e-23	Phage protein (N4 Gp49/phage Sf6 gene 66) family	N/A
structural_annotation	UHGV-0172705_14	PF14083	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172705_15	UniRef90_UPI001C0EBA51	145.0	6.57999e-40	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0172705_15	742765.HMPREF9457_02126	70.1	0.00000000000341	COG NOG36366 non supervised orthologous group	N/A
PHROG	UHGV-0172705_16	phrog_247	227.9	0	major head protein	head and packaging
UniRef90	UHGV-0172705_16	UniRef90_UPI001BA5448B	292.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0172705_16	33035.JPJF01000106_gene3132	546.0	0	N/A	N/A
structural_annotation	UHGV-0172705_16	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_17	phrog_541	90.4	1.5e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0172705_17	1235790.C805_00076	172.0	0	N/A	N/A
PHROG	UHGV-0172705_18	phrog_1233	90.8	1.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0172705_18	33035.JPJF01000106_gene3130	125.0	5.88e-36	N/A	N/A
PHROG	UHGV-0172705_19	phrog_3366	91.6	8.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0172705_19	476272.RUMHYD_01779	127.0	1.49e-35	N/A	N/A
structural_annotation	UHGV-0172705_19	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_20	phrog_556	63.7	1.7e-18	minor head protein	head and packaging
UniRef90	UHGV-0172705_20	UniRef90_UPI000E4989EB	154.0	2.8026e-45	minor capsid protein	N/A
eggNOG-mapper	UHGV-0172705_20	476272.RUMHYD_01780	170.0	0	N/A	N/A
Pfam	UHGV-0172705_20	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0172705_20	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_21	phrog_3266	80.2	2.2e-23	tail completion	connector
eggNOG-mapper	UHGV-0172705_21	476272.RUMHYD_01781	187.0	0	N/A	N/A
structural_annotation	UHGV-0172705_21	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_22	phrog_3099	131.2	6.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0172705_22	411902.CLOBOL_00129	157.0	0	N/A	N/A
structural_annotation	UHGV-0172705_22	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_23	phrog_11299	75.2	1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0172705_23	411459.RUMOBE_01382	74.7	0.00000000000000308	N/A	N/A
structural_annotation	UHGV-0172705_23	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_24	phrog_706	138.1	5.10003e-41	N/A	unknown function
UniRef90	UHGV-0172705_24	UniRef90_A0A173TZF2	388.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0172705_24	411459.RUMOBE_01383	208.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0172705_24	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0172705_24	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_25	phrog_1535	272.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0172705_25	UniRef90_A0A173TXH9	1551.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0172705_25	411459.RUMOBE_01384	262.0	0	phage tail tape measure protein	N/A
COG	UHGV-0172705_25	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0172705_25	PF11172	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_26	phrog_1194	40.0	0.000000000064	N/A	unknown function
structural_annotation	UHGV-0172705_26	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0172705_27	K06237	98.4	1e-29	COL4A; collagen type IV alpha	N/A
PHROG	UHGV-0172705_27	phrog_6616	527.3	0	tail protein	tail
UniRef90	UHGV-0172705_27	UniRef90_A0A173TV73	2499.0	0	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-0172705_27	33035.JPJF01000043_gene1002	296.0	0	N/A	N/A
Pfam	UHGV-0172705_27	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0172705_27	PF15711	N/A	N/A	Interleukin-like EMT inducer	ILEI
structural_annotation	UHGV-0172705_27	PF05113,PF01835,PF03921,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0172705_28	phrog_18444	92.8	1.9e-27	N/A	unknown function