UHGV-0173135 (vOTU-005274)

Viral Genome: UHGV-0173135

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0173135
vOTU ID	vOTU-005274
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_593232
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9773
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.46
Jumbo phage	No

Genome content
Genome length (bp)	57,791
GC content	46.55%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	80
CDS density	92%
Average CDS length (bps)	667.24
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0173135_1	phrog_10089	1330.9	0	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0173135_1	UniRef90_A0A3D0X8D0	1286.0	0	Helicase ATP-binding domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0173135_1	397288.C806_03713	962.0	0	helicase C-terminal domain protein	N/A
PADLOC	UHGV-0173135_1	DrmD_00004	40.2	0.000000000051	DrmD	DISARM
Pfam	UHGV-0173135_1	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0173135_1	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0173135_1	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
Pfam	UHGV-0173135_1	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0173135_1	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
KOfam	UHGV-0173135_2	K14059	168.0	0	int; integrase	N/A
PHROG	UHGV-0173135_2	phrog_1	150.7	1.26117e-44	integrase	integration and excision
UniRef90	UHGV-0173135_2	UniRef90_A0A353J242	191.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0173135_2	887325.HMPREF0381_0346	169.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0173135_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0173135_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0173135_2	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173135_3	1408437.JNJN01000043_gene801	89.4	5.83e-20	N/A	N/A
structural_annotation	UHGV-0173135_5	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173135_8	1121334.KB911071_gene1966	55.1	0.00000000628	N/A	N/A
KOfam	UHGV-0173135_10	K19304	98.9	6.8e-29	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0173135_10	phrog_7767	98.5	8.1e-29	metallo-endopeptidase	other
UniRef90	UHGV-0173135_10	UniRef90_A0A1E1VI95	82.0	0.0000000000000315	Muramidase	N/A
eggNOG-mapper	UHGV-0173135_10	1158601.I585_02846	95.5	2.98e-18	Peptidase family M23	N/A
Pfam	UHGV-0173135_10	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0173135_10	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-0173135_10	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0173135_10	PF01551,PF09992,NF040883,COG0739,COG3698	N/A	N/A	N/A	N/A
PHROG	UHGV-0173135_11	phrog_4105	97.1	1.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0173135_11	397288.C806_00056	92.4	6.95e-23	N/A	N/A
PHROG	UHGV-0173135_13	phrog_13589	50.3	8.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0173135_13	411471.SUBVAR_06929	265.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0173135_13	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0173135_15	phrog_19111	70.1	1.3e-20	N/A	unknown function
COG	UHGV-0173135_16	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
structural_annotation	UHGV-0173135_16	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173135_19	1449126.JQKL01000002_gene1688	77.8	0.00000000000174	N/A	N/A
structural_annotation	UHGV-0173135_19	PF11134,MF_00923,NF010237,NF038128,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173135_20	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0173135_22	phrog_14242	116.9	1.3e-34	major head protein	head and packaging
UniRef90	UHGV-0173135_22	UniRef90_A0A355JD53	278.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0173135_22	588581.Cpap_1528	134.0	1.12e-32	N/A	N/A
NCBIFam	UHGV-0173135_22	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0173135_22	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0173135_24	phrog_156	85.9	7.3e-27	portal protein	head and packaging
eggNOG-mapper	UHGV-0173135_24	588581.Cpap_1526	235.0	0	N/A	N/A
structural_annotation	UHGV-0173135_24	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0173135_27	K06909	298.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0173135_27	phrog_3717	199.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0173135_27	UniRef90_A0A3S1ABC6	481.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0173135_27	696281.Desru_1088	437.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0173135_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0173135_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0173135_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0173135_27	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0173135_28	phrog_606	49.2	0.00000000000009	terminase small subunit	head and packaging
Pfam	UHGV-0173135_28	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0173135_28	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0173135_29	phrog_13890	64.0	1.9e-18	N/A	unknown function
UniRef90	UHGV-0173135_29	UniRef90_A0A6N9P941	65.1	0.0000000000014	Antitoxin	N/A
eggNOG-mapper	UHGV-0173135_29	1501230.ET33_16755	50.4	0.00000016	N/A	N/A
structural_annotation	UHGV-0173135_29	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173135_32	PF19129,NF007348,COG5569	N/A	N/A	N/A	N/A
PHROG	UHGV-0173135_37	phrog_25567	49.0	0.000000000000086	N/A	unknown function
UniRef90	UHGV-0173135_37	UniRef90_A0A0K9N6V9	57.0	0.000000065	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-0173135_37	888727.HMPREF9092_0491	55.5	0.00000000874	Helix-turn-helix	N/A
COG	UHGV-0173135_37	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0173135_37	PF01381,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0173135_39	K07729	41.4	0.000000000029	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0173135_39	phrog_3	41.4	0.000000000058	transcriptional repressor	transcription regulation
Pfam	UHGV-0173135_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0173135_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173135_39	PF01381,NF040507,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173135_41	756499.Desde_3141	54.3	0.000000855	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0173135_41	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0173135_41	COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173135_42	UniRef90_A0A372V4S2	60.1	0.00000000243	XRE family transcriptional regulator	N/A
Pfam	UHGV-0173135_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0173135_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173135_42	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173135_43	UniRef90_A0A4S2H5B3	89.0	9.91e-22	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0173135_43	397291.C804_05807	66.6	0.000000000000112	sequence-specific DNA binding	N/A
COG	UHGV-0173135_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173135_43	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
Pfam	UHGV-0173135_48	PF07083	N/A	N/A	N/A	DUF1351
PHROG	UHGV-0173135_49	phrog_2760	172.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173135_49	UniRef90_UPI0019154C91	204.0	0	phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0173135_49	1122173.AXVL01000068_gene1414	182.0	0	DNA synthesis involved in double-strand break repair via homologous recombination	N/A
Pfam	UHGV-0173135_49	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0173135_49	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0173135_49	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0173135_49	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173135_51	PF13744,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0173135_52	phrog_270	89.2	5.3e-26	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0173135_52	1423724.BAMM01000020_gene1808	79.0	0.0000000000000427	N/A	N/A
COG	UHGV-0173135_52	COG3756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173135_52	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0173135_53	phrog_9804	102.3	5.1e-30	N/A	unknown function
UniRef90	UHGV-0173135_53	UniRef90_R6LQQ5	114.0	2.64e-28	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0173135_53	1499683.CCFF01000013_gene503	83.2	3.26e-17	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0173135_53	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0173135_53	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0173135_59	K01520	128.1	8.1e-38	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0173135_59	phrog_135	115.5	4.1e-34	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173135_59	UniRef90_R6ILQ3	145.0	2.71992e-42	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0173135_59	1282887.AUJG01000016_gene1113	139.0	1.68e-39	N/A	N/A
Pfam	UHGV-0173135_59	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0173135_59	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0173135_59	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0173135_59	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173135_60	PF04319,PF08962	N/A	N/A	N/A	N/A
PHROG	UHGV-0173135_61	phrog_757	81.4	1.1e-23	DNA methyltransferase	other
UniRef90	UHGV-0173135_61	UniRef90_UPI000C082058	100.0	1.45e-24	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0173135_61	748224.HMPREF9436_03069	124.0	9.72e-34	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0173135_61	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0173135_61	PF04445,MF_00341,TIGR00537,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0173135_62	phrog_757	105.9	3.7e-31	DNA methyltransferase	other
UniRef90	UHGV-0173135_62	UniRef90_A0A417JTT5	116.0	5.68e-30	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0173135_62	1410628.JNKS01000023_gene1763	101.0	1.01e-24	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0173135_62	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0173135_64	PF06289,COG1582	N/A	N/A	N/A	N/A
KOfam	UHGV-0173135_74	K01160	49.5	0.00000000000012	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0173135_74	phrog_4632	46.6	0.000000000000075	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173135_74	UniRef90_A0A1V5ZUM0	111.0	8.85e-28	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0173135_74	556263.FSEG_00477	67.8	0.00000000000612	N/A	N/A
PHROG	UHGV-0173135_75	phrog_374	201.0	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173135_75	UniRef90_A0A7W0C2S3	190.0	0	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0173135_75	357276.EL88_11255	193.0	0	N/A	N/A
structural_annotation	UHGV-0173135_75	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-0173135_76	phrog_474	87.5	2.5e-25	phosphofructokinase	other
UniRef90	UHGV-0173135_76	UniRef90_UPI00195F5FF7	90.9	1.28e-21	N/A	N/A
eggNOG-mapper	UHGV-0173135_76	1095750.HMPREF9970_1026	84.0	1.06e-19	N/A	N/A
Pfam	UHGV-0173135_76	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0173135_76	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-0173135_78	K03111	123.1	4e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0173135_78	phrog_44	121.8	6.2e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173135_78	UniRef90_A0A7C6GL00	152.0	1.12104e-44	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0173135_78	1232443.BAIA02000073_gene513	119.0	1.33e-32	Single-strand binding protein family	N/A
Pfam	UHGV-0173135_78	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0173135_78	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0173135_78	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0173135_78	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0173135_78	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A