UHGV-0173185 (vOTU-132966)

Viral Genome: UHGV-0173185

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0173185
vOTU ID	vOTU-132966
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_560384
Associated BioSample	SAMN06233224
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.63 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9776
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.15
Jumbo phage	No

Genome content
Genome length (bp)	34,366
GC content	47.15%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	92%
Average CDS length (bps)	574.96
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0173185_1	1262914.BN533_01961	166.0	0	Product inferred by homology to UniProt	N/A
KOfam	UHGV-0173185_2	K14059	191.4	0	int; integrase	N/A
PHROG	UHGV-0173185_2	phrog_1	178.0	0	integrase	integration and excision
UniRef90	UHGV-0173185_2	UniRef90_R6J9I2	346.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-0173185_2	1262914.BN533_01960	346.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0173185_2	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0173185_2	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0173185_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0173185_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0173185_2	PF00589,PF13102,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_3	phrog_9243	40.0	0.000000000057	N/A	unknown function
UniRef90	UHGV-0173185_3	UniRef90_A0A416ESD6	313.0	0	N/A	N/A
Pfam	UHGV-0173185_3	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-0173185_3	TIGR00729,COG1039	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_4	phrog_87	92.6	3.1e-27	metallo-protease	other
UniRef90	UHGV-0173185_4	UniRef90_R6WQB8	275.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173185_4	484770.UFO1_1662	159.0	0	N/A	N/A
Pfam	UHGV-0173185_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0173185_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0173185_4	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0173185_5	K22299	67.1	3.9e-19	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0173185_5	phrog_8	63.3	5.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0173185_5	UniRef90_R6WK78	174.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0173185_5	768710.DesyoDRAFT_5259	128.0	2.65e-36	PFAM helix-turn-helix	N/A
PADLOC	UHGV-0173185_5	retron_type_VI_hth_cluster2_1	46.9	0.00000000000052	N/A	Retron
Pfam	UHGV-0173185_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0173185_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173185_5	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0173185_6	K22299	41.2	0.000000000037	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0173185_6	phrog_8	45.2	0.0000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0173185_6	UniRef90_H3K591	85.1	2.07e-20	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0173185_6	706433.HMPREF9430_01294	71.2	0.00000000000000134	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0173185_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0173185_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_7	phrog_2977	59.5	6.6e-17	anti-repressor	transcription regulation
UniRef90	UHGV-0173185_7	UniRef90_R6H349	62.8	0.00000000000514	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0173185_7	718252.FP2_06840	69.7	0.0000000000000422	BRO family, N-terminal domain	N/A
Pfam	UHGV-0173185_7	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0173185_7	COG3617	N/A	N/A	Prophage antirepressor	N/A
UniRef90	UHGV-0173185_9	UniRef90_A0A365ZWU5	51.2	0.000000781	DNA-binding protein	N/A
COG	UHGV-0173185_9	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
UniRef90	UHGV-0173185_10	UniRef90_R6XZA3	140.0	5.92049e-42	LysM domain protein	N/A
structural_annotation	UHGV-0173185_10	MF_02014,NF010723	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_12	phrog_2324	155.6	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173185_12	UniRef90_A0A1H6VD67	151.0	7.70714e-43	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0173185_12	1207076.ALAT01000201_gene1614	142.0	7.98999e-40	ERF superfamily	N/A
Pfam	UHGV-0173185_12	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0173185_12	PF04404,TIGR00607	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_13	phrog_7566	91.8	4.9e-27	N/A	unknown function
UniRef90	UHGV-0173185_13	UniRef90_A0A374BVG3	75.5	0.0000000000000011	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0173185_13	411459.RUMOBE_00948	65.9	0.00000000000171	N/A	N/A
PHROG	UHGV-0173185_14	phrog_72	56.7	4.4e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0173185_14	1304866.K413DRAFT_1197	154.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0173185_14	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_15	phrog_11233	103.6	2.2e-30	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173185_15	UniRef90_M3JBX3	87.4	1.64e-19	Bacteriophage-like protein (Fragment)	N/A
eggNOG-mapper	UHGV-0173185_15	1399942.U3PDU2_9CAUD	84.0	1.45e-17	calcium ion binding	N/A
PHROG	UHGV-0173185_17	phrog_9804	57.3	2.7e-16	N/A	unknown function
UniRef90	UHGV-0173185_17	UniRef90_A0A316S7J6	126.0	2.14e-33	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0173185_17	1280706.AUJE01000046_gene1152	58.9	0.0000000269	N/A	N/A
structural_annotation	UHGV-0173185_17	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0173185_19	K03111	131.6	9.7e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0173185_19	phrog_44	140.1	1.49995e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173185_19	UniRef90_R6WK64	165.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0173185_19	626939.HMPREF9443_01150	151.0	1.4013e-45	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0173185_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0173185_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0173185_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0173185_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0173185_19	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_20	phrog_190	143.6	1.00053e-42	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173185_20	UniRef90_UPI000BB69186	136.0	2.46e-39	N/A	N/A
eggNOG-mapper	UHGV-0173185_20	1347392.CCEZ01000043_gene417	127.0	1.36e-36	N/A	N/A
Pfam	UHGV-0173185_20	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0173185_20	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_21	phrog_236	102.1	6.9e-30	nucleotide kinase	other
eggNOG-mapper	UHGV-0173185_21	1033743.CAES01000020_gene3148	90.1	1.37e-20	N/A	N/A
Pfam	UHGV-0173185_21	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0173185_22	phrog_26484	46.0	0.00000000000088	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173185_22	UniRef90_A0A285GC28	73.6	0.00000000000000119	PC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173185_22	1211817.CCAT010000045_gene3100	69.3	0.00000000000000921	Transcriptional Coactivator p15 (PC4)	N/A
Pfam	UHGV-0173185_22	PF02229	N/A	N/A	Transcriptional Coactivator p15 (PC4)	PC4
COG	UHGV-0173185_22	COG4443	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173185_22	COG4443	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173185_29	PF13248	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173185_31	UniRef90_A0A6N7WVF3	54.7	0.000000896	Restriction endonuclease subunit S	N/A
PHROG	UHGV-0173185_32	phrog_36	88.5	8.3e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-0173185_32	UniRef90_R6WQ64	184.0	0	Sigma-70 region 4 domain protein	N/A
eggNOG-mapper	UHGV-0173185_32	469617.FUAG_00831	55.8	0.0000000627	sigma factor activity	N/A
Pfam	UHGV-0173185_32	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0173185_32	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0173185_32	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173185_33	568816.Acin_1817	112.0	2.25e-29	N/A	N/A
UniRef90	UHGV-0173185_34	UniRef90_R6X5I6	272.0	0	PhageMetallopep domain-containing protein	N/A
eggNOG-mapper	UHGV-0173185_34	926561.KB900624_gene2638	65.9	0.0000000000237	N/A	N/A
Pfam	UHGV-0173185_34	PF18894	N/A	N/A	Putative phage metallopeptidase	PhageMetallopep
structural_annotation	UHGV-0173185_34	PF18894,COG4900	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173185_35	UniRef90_UPI001E414EFE	52.0	0.00000638	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0173185_35	556268.OFAG_00320	65.9	0.00000000000417	N/A	N/A
PHROG	UHGV-0173185_36	phrog_30251	643.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0173185_36	UniRef90_UPI001F2335B1	647.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0173185_36	1499683.CCFF01000014_gene3915	603.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0173185_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0173185_36	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0173185_36	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0173185_36	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173185_36	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_37	phrog_145	148.6	1.82169e-44	portal protein	head and packaging
UniRef90	UHGV-0173185_37	UniRef90_R6WQ48	891.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0173185_37	1232428.CAVO010000021_gene806	323.0	0	N/A	N/A
structural_annotation	UHGV-0173185_37	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_38	phrog_1657	93.9	3.7e-30	head morphogenesis	head and packaging
UniRef90	UHGV-0173185_38	UniRef90_R6WQ42	599.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0173185_38	1273103.NM10_06796	279.0	0	N/A	N/A
structural_annotation	UHGV-0173185_38	PF04233,TIGR01641	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173185_40	1280706.AUJE01000003_gene2260	109.0	1.05e-26	N/A	N/A
structural_annotation	UHGV-0173185_40	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_41	phrog_422	219.9	0	major head protein	head and packaging
UniRef90	UHGV-0173185_41	UniRef90_R6WWZ7	536.0	0	Gp7	N/A
eggNOG-mapper	UHGV-0173185_41	1352230.S6AVV3_9CAUD	349.0	0	N/A	N/A
NCBIFam	UHGV-0173185_41	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0173185_41	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_42	phrog_5	50.1	0.000000000000081	tail completion or Neck1 protein	connector
UniRef90	UHGV-0173185_42	UniRef90_F9MMJ2	101.0	1.92e-24	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0173185_42	1000569.HMPREF1040_0194	101.0	3.22e-25	Phage virion morphogenesis	N/A
COG	UHGV-0173185_42	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173185_42	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173185_43	1111454.HMPREF1250_1049	70.5	0.0000000000000729	N/A	N/A
UniRef90	UHGV-0173185_45	UniRef90_R6WK09	161.0	0	Conserved domain protein	N/A
PHROG	UHGV-0173185_46	phrog_1407	156.7	0	major tail protein	tail
UniRef90	UHGV-0173185_46	UniRef90_R6X5G0	309.0	0	Phage major tail protein TP901-1 family	N/A
eggNOG-mapper	UHGV-0173185_46	568816.Acin_1911	254.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0173185_46	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-0173185_46	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
COG	UHGV-0173185_46	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
structural_annotation	UHGV-0173185_46	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173185_47	1123288.SOV_2c03540	65.5	0.00000000000419	N/A	N/A
structural_annotation	UHGV-0173185_47	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_49	phrog_12798	165.0	0	N/A	unknown function
UniRef90	UHGV-0173185_49	UniRef90_R6WQ18	1435.0	0	Tape measure domain-containing protein	N/A
eggNOG-mapper	UHGV-0173185_49	2754.EH55_13250	194.0	0	tape measure	N/A
Pfam	UHGV-0173185_49	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0173185_49	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0173185_49	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0173185_49	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_50	phrog_2913	82.4	4.2e-24	glycoside hydrolase	other
UniRef90	UHGV-0173185_50	UniRef90_UPI000C7C1E73	200.0	0	N/A	N/A
eggNOG-mapper	UHGV-0173185_50	592028.GCWU000321_01387	191.0	0	N/A	N/A
Pfam	UHGV-0173185_50	PF09343	N/A	N/A	N/A	DUF2460
COG	UHGV-0173185_50	COG5448	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173185_50	PF09343,TIGR02217,COG5448	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_51	phrog_778	52.0	0.000000000000011	tail assembly protein	tail
UniRef90	UHGV-0173185_51	UniRef90_R6AUE0	248.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0173185_51	742743.HMPREF9453_00554	218.0	0	N/A	N/A
Pfam	UHGV-0173185_51	PF09931	N/A	N/A	N/A	DUF2163
COG	UHGV-0173185_51	COG5449	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173185_51	PF09931,TIGR01600,COG4672	N/A	N/A	N/A	N/A
KOfam	UHGV-0173185_52	K13695	54.9	0.0000000000000015	nlpC; probable lipoprotein NlpC	N/A
PHROG	UHGV-0173185_52	phrog_329	52.9	0.000000000000004	minor tail protein	tail
UniRef90	UHGV-0173185_52	UniRef90_H1CYW5	216.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173185_52	742743.HMPREF9453_00553	216.0	0	cysteine-type peptidase activity	N/A
Pfam	UHGV-0173185_52	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0173185_52	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0173185_52	PF00877,TIGR02219,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_53	phrog_1101	398.1	0	tail protein	tail
UniRef90	UHGV-0173185_53	UniRef90_H1CYW4	1043.0	0	Phage-tail_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173185_53	742743.HMPREF9453_00552	1043.0	0	Putative phage tail protein	N/A
Pfam	UHGV-0173185_53	PF13550	N/A	N/A	Putative phage tail protein	Phage-tail_3
COG	UHGV-0173185_53	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0173185_53	PF13550,NF040662,COG4733	N/A	N/A	N/A	N/A
PHROG	UHGV-0173185_54	phrog_19976	46.1	5.2e-26	tail assembly protein	tail
eggNOG-mapper	UHGV-0173185_54	1306174.JODP01000006_gene3223	55.8	0.00000238	N/A	N/A
Pfam	UHGV-0173185_54	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
PHROG	UHGV-0173185_55	phrog_2557	41.5	0.000000000014	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0173185_55	864563.HMPREF9166_0550	57.0	0.00000357	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0173185_55	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A