UHGV-0173222 (vOTU-100070)

Viral Genome: UHGV-0173222

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0173222
vOTU ID	vOTU-100070
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_584643
Associated BioSample	SAMN09781790
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.47 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9763
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.6
Jumbo phage	No

Genome content
Genome length (bp)	40,609
GC content	49.46%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	87%
Average CDS length (bps)	572.86
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.47)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0173222_1	phrog_8	54.9	0.000000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0173222_1	UniRef90_A0A1C6D4U5	90.5	4.76e-21	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-0173222_1	1304866.K413DRAFT_0834	56.2	0.0000000129	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0173222_1	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0173222_1	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0173222_1	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173222_6	UniRef90_A0A2A7B6N3	195.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0173222_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0173222_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173222_6	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_7	phrog_4402	114.3	1e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173222_7	UniRef90_A0A0H5Q331	235.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173222_7	999413.HMPREF1094_04438	136.0	2.27e-34	Initiator Replication protein	N/A
Pfam	UHGV-0173222_7	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-0173222_7	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-0173222_7	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-0173222_7	PF01051,PF21205,NF010305,COG5527	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_8	phrog_924	44.8	0.0000000000029	N/A	unknown function
UniRef90	UHGV-0173222_8	UniRef90_A0A316RLR0	61.2	0.000000000683	N/A	N/A
Pfam	UHGV-0173222_8	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0173222_8	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-0173222_9	K03496	237.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0173222_9	phrog_164	161.3	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173222_9	UniRef90_A0A1C6BS15	212.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-0173222_9	1408423.JHYA01000021_gene392	194.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-0173222_9	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0173222_9	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0173222_9	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173222_11	PF07878	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_12	phrog_10980	51.6	0.000000000000018	N/A	unknown function
UniRef90	UHGV-0173222_12	UniRef90_G3MA20	68.2	0.00000000000437	Gp279	N/A
structural_annotation	UHGV-0173222_14	PF14166	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_16	phrog_7070	114.9	2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0173222_16	1195072.M4HPW0_9CAUD	94.4	1.71e-23	N/A	N/A
eggNOG-mapper	UHGV-0173222_17	1378168.N510_03079	96.7	1.68e-21	N/A	N/A
eggNOG-mapper	UHGV-0173222_18	1408437.JNJN01000043_gene802	120.0	1.83e-33	N/A	N/A
PHROG	UHGV-0173222_19	phrog_16490	103.4	1.3e-40	N/A	unknown function
eggNOG-mapper	UHGV-0173222_19	1408437.JNJN01000043_gene803	162.0	0	N/A	N/A
PHROG	UHGV-0173222_23	phrog_15303	84.0	1.4e-24	N/A	unknown function
KOfam	UHGV-0173222_25	K07273	139.6	3.09995e-41	acm; lysozyme	N/A
PHROG	UHGV-0173222_25	phrog_291	100.6	1.9e-29	endolysin	lysis
UniRef90	UHGV-0173222_25	UniRef90_A0A564U0D3	387.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0173222_25	718252.FP2_04890	238.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0173222_25	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0173222_25	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0173222_25	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_26	phrog_28526	105.1	2.7e-31	N/A	unknown function
UniRef90	UHGV-0173222_26	UniRef90_A0A415D4T1	77.4	7.55e-18	N/A	N/A
eggNOG-mapper	UHGV-0173222_26	411462.DORLON_00769	80.9	5.35e-20	N/A	N/A
Pfam	UHGV-0173222_26	PF04255	N/A	N/A	N/A	DUF433
UniRef90	UHGV-0173222_28	UniRef90_A0A7Y1BBU9	57.4	0.00000325	Phage tail protein	N/A
eggNOG-mapper	UHGV-0173222_28	935840.JAEQ01000036_gene3232	55.1	0.0000054	N/A	N/A
PHROG	UHGV-0173222_29	phrog_27381	46.8	2.8e-24	tail fiber protein	tail
PHROG	UHGV-0173222_30	phrog_18725	75.6	7.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0173222_30	1226322.HMPREF1545_00062	84.7	1.41e-18	N/A	N/A
PHROG	UHGV-0173222_31	phrog_13879	217.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0173222_31	1007103.AFHW01000096_gene3259	153.0	2.66e-37	N/A	N/A
Pfam	UHGV-0173222_31	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0173222_31	PF14594,PF19789,PF03256,PF09134,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_32	phrog_314	108.3	1.3e-33	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173222_32	UniRef90_A0A7X9GBM3	106.0	8.04e-25	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0173222_32	476272.RUMHYD_01755	91.3	1.51e-19	GIY-YIG type nucleases (URI domain)	N/A
Pfam	UHGV-0173222_32	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-0173222_32	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
NCBIFam	UHGV-0173222_32	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
COG	UHGV-0173222_32	COG3860	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173222_32	PF19835,PF07460,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_33	phrog_1194	88.4	6.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0173222_33	665956.HMPREF1032_03629	62.4	0.000000000131	N/A	N/A
Pfam	UHGV-0173222_33	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0173222_33	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_34	phrog_1535	159.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0173222_34	UniRef90_A0A318EME6	166.0	8.78e-38	Phage-related protein	N/A
eggNOG-mapper	UHGV-0173222_34	1121866.AUGK01000003_gene1437	191.0	0	phage tail tape measure protein	N/A
COG	UHGV-0173222_34	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-0173222_35	1121333.JMLH01000047_gene1011	78.2	1.43e-16	N/A	N/A
UniRef90	UHGV-0173222_36	UniRef90_A0A847YX95	71.2	0.000000000000102	N/A	N/A
eggNOG-mapper	UHGV-0173222_36	1123263.AUKY01000015_gene1618	61.6	0.0000000000972	N/A	N/A
Pfam	UHGV-0173222_36	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0173222_36	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_37	phrog_158	44.7	0.0000000000024	major tail protein	tail
UniRef90	UHGV-0173222_37	UniRef90_UPI001D06C8CA	93.2	1.5e-21	phage tail protein	N/A
eggNOG-mapper	UHGV-0173222_37	1449343.JQLQ01000002_gene1514	53.1	0.00000108	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0173222_37	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173222_38	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173222_40	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173222_41	UniRef90_R6N215	82.4	3.72e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-0173222_41	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_42	phrog_29	200.7	0	major head protein	head and packaging
UniRef90	UHGV-0173222_42	UniRef90_A0A2Z4QBB4	369.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0173222_42	1347368.HG964404_gene4993	257.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0173222_42	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0173222_42	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_45	phrog_64	148.0	4.76441e-44	portal protein	head and packaging
UniRef90	UHGV-0173222_45	UniRef90_A0A371ILT4	334.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0173222_45	1121866.AUGK01000003_gene1429	278.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0173222_45	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0173222_45	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_47	phrog_38	176.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0173222_47	UniRef90_UPI000419A6BC	427.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0173222_47	1121866.AUGK01000003_gene1428	427.0	0	chromosome segregation	N/A
COG	UHGV-0173222_47	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173222_47	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-0173222_49	K14060	128.5	6.8e-38	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0173222_49	phrog_125	157.1	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173222_49	UniRef90_A0A3D0LYX8	212.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0173222_49	1410633.JHWR01000012_gene95	192.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0173222_49	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0173222_49	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0173222_49	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173222_50	PF20075	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173222_52	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-0173222_53	K07741	89.3	6.8e-26	antB; anti-repressor protein	N/A
PHROG	UHGV-0173222_53	phrog_373	142.8	2.59941e-42	anti-repressor	transcription regulation
UniRef90	UHGV-0173222_53	UniRef90_UPI001C039A6C	176.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0173222_53	1567013.A0A0A7RVQ9_9CAUD	157.0	7.00649e-45	AntA/AntB antirepressor	N/A
Pfam	UHGV-0173222_53	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0173222_53	PF10552	N/A	N/A	ORF6C domain	ORF6C
structural_annotation	UHGV-0173222_53	PF10552,PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173222_55	PF12869,MF_00720,NF040991,COG4085	N/A	N/A	N/A	N/A
PHROG	UHGV-0173222_56	phrog_14275	45.9	0.00000000000074	N/A	unknown function
eggNOG-mapper	UHGV-0173222_56	1280676.AUJO01000001_gene2313	66.6	0.0000000013	N/A	N/A
PHROG	UHGV-0173222_60	phrog_434	41.3	0.000000000022	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0173222_60	742738.HMPREF9460_00717	48.9	0.00000238	YqaJ viral recombinase family	N/A
COG	UHGV-0173222_60	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A