UHGV-0173559 (vOTU-066787)

Viral Genome: UHGV-0173559

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0173559
vOTU ID	vOTU-066787
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_591575
Associated BioSample	SAMN09781791
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.14 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.68
Jumbo phage	No

Genome content
Genome length (bp)	43,014
GC content	45.35%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	90%
Average CDS length (bps)	576.90
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0173559_1	phrog_36464	43.5	0.0000000000067	N/A	unknown function
eggNOG-mapper	UHGV-0173559_1	1235798.C817_05488	62.0	0.00000000000626	N/A	N/A
structural_annotation	UHGV-0173559_1	PF09035	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173559_2	760568.Desku_0919	69.3	0.000000000000698	N/A	N/A
PHROG	UHGV-0173559_7	phrog_659	48.9	0.000000000000087	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173559_7	UniRef90_A0A352BM23	306.0	0	N/A	N/A
eggNOG-mapper	UHGV-0173559_7	33035.JPJF01000135_gene5082	296.0	0	N/A	N/A
Pfam	UHGV-0173559_7	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0173559_7	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_8	phrog_398	202.0	0	N/A	unknown function
UniRef90	UHGV-0173559_8	UniRef90_UPI001E5E0390	295.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0173559_8	33035.JPJF01000122_gene2462	293.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0173559_8	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0173559_8	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_10	phrog_244	56.1	8.1e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0173559_10	33035.JPJF01000122_gene2460	136.0	1.73e-40	N/A	N/A
structural_annotation	UHGV-0173559_10	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_11	phrog_428	124.7	1.1e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173559_11	UniRef90_UPI001A9B7C73	105.0	2.55e-24	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0173559_11	1304866.K413DRAFT_1200	115.0	1.89e-28	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0173559_11	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0173559_11	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0173559_11	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0173559_11	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-0173559_11	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0173559_13	K00571	89.0	6.3e-26	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0173559_13	phrog_16	227.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173559_13	UniRef90_A0A173S745	1609.0	0	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-0173559_13	1298920.KI911353_gene2709	1387.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0173559_13	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0173559_13	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0173559_13	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0173559_13	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0173559_15	K00558	216.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0173559_15	phrog_116	254.0	0	DNA methyltransferase	other
UniRef90	UHGV-0173559_15	UniRef90_A0A174GZ53	719.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0173559_15	1235800.C819_02255	603.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0173559_15	MTase_II_00020	107.9	7e-33	Type II methyltransferase	RM
Pfam	UHGV-0173559_15	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0173559_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0173559_15	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_16	phrog_20593	55.2	5.5e-17	N/A	unknown function
PHROG	UHGV-0173559_17	phrog_21101	44.5	0.0000000000013	N/A	unknown function
UniRef90	UHGV-0173559_17	UniRef90_UPI001C02123C	115.0	5.76e-32	N/A	N/A
eggNOG-mapper	UHGV-0173559_17	1123489.AUAN01000003_gene1171	89.7	1.7e-22	N/A	N/A
Pfam	UHGV-0173559_17	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-0173559_17	COG4728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173559_17	PF07866,COG4728	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_19	phrog_874	92.8	4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0173559_19	1232449.BAHV02000016_gene1832	96.7	5.84e-22	N/A	N/A
eggNOG-mapper	UHGV-0173559_24	476272.RUMHYD_01751	57.0	0.00000000243	N/A	N/A
KOfam	UHGV-0173559_25	K06909	430.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0173559_25	phrog_3717	171.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0173559_25	UniRef90_A0A412EKJ9	843.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0173559_25	33035.JPJF01000106_gene3136	712.0	0	Terminase small subunit	N/A
Pfam	UHGV-0173559_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0173559_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0173559_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0173559_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0173559_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0173559_25	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_26	phrog_533	275.4	0	portal protein	head and packaging
UniRef90	UHGV-0173559_26	UniRef90_A0A1C6CDM8	689.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0173559_26	33035.JPJF01000106_gene3135	497.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0173559_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_28	phrog_581	257.1	0	minor head protein	head and packaging
UniRef90	UHGV-0173559_28	UniRef90_A0A1C6CDG2	551.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0173559_28	33035.JPJF01000106_gene3134	427.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0173559_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0173559_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173559_28	PF06152	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173559_29	UniRef90_A0A417UWY7	120.0	3.49e-33	CTP synthase	N/A
PHROG	UHGV-0173559_31	phrog_21718	74.8	1.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0173559_31	1235790.C805_00058	103.0	7.53e-26	N/A	N/A
eggNOG-mapper	UHGV-0173559_33	476272.RUMHYD_01770	77.4	0.0000000000000183	N/A	N/A
PHROG	UHGV-0173559_35	phrog_20016	61.8	9e-18	N/A	unknown function
UniRef90	UHGV-0173559_35	UniRef90_A0A316MV88	217.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0173559_35	1226322.HMPREF1545_00077	68.9	0.000000000000705	N/A	N/A
structural_annotation	UHGV-0173559_35	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173559_36	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173559_38	UniRef90_UPI001C0EBA51	282.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0173559_38	742765.HMPREF9457_02126	91.3	3.93e-20	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0173559_38	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0173559_39	phrog_247	276.7	0	major head protein	head and packaging
UniRef90	UHGV-0173559_39	UniRef90_A0A3R6K7E9	634.0	0	Phage coat protein	N/A
eggNOG-mapper	UHGV-0173559_39	1292035.H476_1014	415.0	0	N/A	N/A
Pfam	UHGV-0173559_39	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
COG	UHGV-0173559_39	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0173559_39	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_40	phrog_541	95.5	3.9e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0173559_40	476272.RUMHYD_01778	115.0	1.14e-30	N/A	N/A
PHROG	UHGV-0173559_41	phrog_28328	76.0	1.6e-22	N/A	unknown function
PHROG	UHGV-0173559_42	phrog_1129	66.3	3.3e-19	holin	lysis
UniRef90	UHGV-0173559_42	UniRef90_A0A417JD09	141.0	3.15012e-42	Enolase	N/A
eggNOG-mapper	UHGV-0173559_42	1226322.HMPREF1545_00069	76.3	4.44e-17	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0173559_42	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0173559_42	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_43	phrog_9479	156.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0173559_43	1514668.JOOA01000002_gene2680	60.5	0.000000000498	N/A	N/A
structural_annotation	UHGV-0173559_43	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_45	phrog_8680	234.6	0	N/A	unknown function
UniRef90	UHGV-0173559_45	UniRef90_UPI001C0F342A	408.0	0	N/A	N/A
eggNOG-mapper	UHGV-0173559_45	411470.RUMGNA_02208	274.0	0	N/A	N/A
Pfam	UHGV-0173559_45	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0173559_45	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_46	phrog_3366	91.2	4.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0173559_46	476272.RUMHYD_01779	132.0	2.21e-37	N/A	N/A
structural_annotation	UHGV-0173559_46	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_47	phrog_556	52.5	3.8e-16	minor head protein	head and packaging
UniRef90	UHGV-0173559_47	UniRef90_UPI0008B4CFF0	223.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0173559_47	476272.RUMHYD_01780	160.0	0	N/A	N/A
structural_annotation	UHGV-0173559_47	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_48	phrog_3266	72.8	4e-21	tail completion	connector
eggNOG-mapper	UHGV-0173559_48	476272.RUMHYD_01781	132.0	6.12e-37	N/A	N/A
structural_annotation	UHGV-0173559_48	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_49	phrog_3099	138.7	3.20001e-41	N/A	unknown function
eggNOG-mapper	UHGV-0173559_49	1304866.K413DRAFT_3043	169.0	0	N/A	N/A
structural_annotation	UHGV-0173559_49	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_50	phrog_11299	77.6	1.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0173559_50	33035.JPJF01000106_gene3125	82.4	3.37e-18	N/A	N/A
structural_annotation	UHGV-0173559_50	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_51	phrog_706	126.6	1.6e-37	N/A	unknown function
UniRef90	UHGV-0173559_51	UniRef90_A0A173TZF2	276.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0173559_51	476272.RUMHYD_01784	195.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0173559_51	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0173559_51	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_52	phrog_1535	175.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0173559_52	UniRef90_A0A1C5N853	266.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0173559_52	411459.RUMOBE_01384	219.0	0	phage tail tape measure protein	N/A
COG	UHGV-0173559_52	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0173559_53	phrog_1194	69.9	3.2e-20	N/A	unknown function
structural_annotation	UHGV-0173559_53	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_54	phrog_6616	543.3	0	tail protein	tail
UniRef90	UHGV-0173559_54	UniRef90_A0A173R8I5	409.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173559_54	33035.JPJF01000043_gene1002	361.0	0	N/A	N/A
Pfam	UHGV-0173559_54	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0173559_54	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_55	phrog_25888	46.3	0.00000000000062	N/A	unknown function
eggNOG-mapper	UHGV-0173559_55	33035.JPJF01000093_gene2239	92.0	1.85e-20	N/A	N/A
eggNOG-mapper	UHGV-0173559_56	1235798.C817_04596	64.7	0.00000000403	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0173559_56	COG4675	N/A	N/A	Phage tail collar domain	N/A
KOfam	UHGV-0173559_57	K04763	125.8	5.3e-37	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0173559_57	phrog_1	104.4	1.6e-30	integrase	integration and excision
UniRef90	UHGV-0173559_57	UniRef90_A0A351URM1	313.0	0	Tyr recombinase domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0173559_57	610130.Closa_0719	204.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0173559_57	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0173559_57	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0173559_57	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0173559_57	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0173559_58	K01448	113.6	2e-33	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0173559_58	phrog_435	164.6	0	endolysin	lysis
UniRef90	UHGV-0173559_58	UniRef90_A0A355TJT7	253.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0173559_58	1414720.CBYM010000040_gene1663	214.0	0	Ami_3	N/A
Pfam	UHGV-0173559_58	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0173559_58	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0173559_58	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_60	phrog_2329	63.5	2.6e-18	N/A	unknown function
UniRef90	UHGV-0173559_60	UniRef90_A0A7X5CB73	70.1	0.00000000000000915	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0173559_60	1292035.H476_0264	50.4	0.00000012	N/A	N/A
structural_annotation	UHGV-0173559_60	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A
KOfam	UHGV-0173559_61	K14059	157.2	0	int; integrase	N/A
PHROG	UHGV-0173559_61	phrog_1	150.6	1.26117e-44	integrase	integration and excision
UniRef90	UHGV-0173559_61	UniRef90_A0A1C6K4B6	402.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0173559_61	742740.HMPREF9474_03478	398.0	0	DNA integration	N/A
Pfam	UHGV-0173559_61	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0173559_61	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0173559_61	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_62	phrog_4431	86.7	2.1e-25	N/A	unknown function
UniRef90	UHGV-0173559_62	UniRef90_A0A374AGP7	90.1	1.99e-18	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0173559_62	1449343.JQLQ01000002_gene1561	77.8	0.00000000000000944	N/A	N/A
Pfam	UHGV-0173559_62	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0173559_62	PF05120	N/A	N/A	N/A	N/A
KOfam	UHGV-0173559_63	K22300	58.5	1.5e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0173559_63	phrog_8	68.8	1.2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0173559_63	UniRef90_A0A373NS05	226.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0173559_63	683837.lse_1630	95.1	9.21e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0173559_63	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0173559_63	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173559_63	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173559_64	UniRef90_A0A373NQX7	137.0	5.98999e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0173559_64	1163671.JAGI01000002_gene3923	86.7	9.26e-22	N/A	N/A
structural_annotation	UHGV-0173559_64	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0173559_67	phrog_12206	47.8	0.00000000000021	N/A	unknown function
structural_annotation	UHGV-0173559_67	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A