UHGV-0173718 (vOTU-078737)

Viral Genome: UHGV-0173718

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0173718
vOTU ID	vOTU-078737
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_583988
Associated BioSample	SAMN09781704
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.81 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9824
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.22
Jumbo phage	No

Genome content
Genome length (bp)	36,291
GC content	54.88%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	68
CDS density	94%
Average CDS length (bps)	502.94
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.81)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0173718_1	phrog_1066	125.1	3e-37	N/A	unknown function
eggNOG-mapper	UHGV-0173718_1	1341151.ASZU01000004_gene265	121.0	7.61e-34	N/A	N/A
structural_annotation	UHGV-0173718_1	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_2	phrog_9	384.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0173718_2	UniRef90_UPI001D07C789	788.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0173718_2	1203606.HMPREF1526_00981	740.0	0	Terminase	N/A
Pfam	UHGV-0173718_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0173718_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0173718_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0173718_2	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_3	phrog_12	170.7	0	portal protein	head and packaging
UniRef90	UHGV-0173718_3	UniRef90_UPI001898FCCE	498.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0173718_3	626523.GCWU000342_01027	493.0	0	Portal protein	N/A
Pfam	UHGV-0173718_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0173718_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0173718_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0173718_4	K01358	131.0	1.5e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0173718_4	phrog_94	201.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0173718_4	UniRef90_UPI0018979DC8	207.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0173718_4	1280689.AUJC01000011_gene1520	188.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0173718_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0173718_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0173718_4	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_5	phrog_10	194.5	0	major head protein	head and packaging
UniRef90	UHGV-0173718_5	UniRef90_UPI00189AE5FE	419.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0173718_5	1280689.AUJC01000011_gene1521	395.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0173718_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0173718_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0173718_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0173718_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_6	phrog_5223	42.1	0.000000000012	neck protein	connector
UniRef90	UHGV-0173718_6	UniRef90_B6W9Y5	62.4	0.000000000128	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0173718_6	561177.ANHYDRO_01411	62.4	0.0000000000215	N/A	N/A
PHROG	UHGV-0173718_7	phrog_1951	75.6	5e-22	head-tail adaptor	connector
UniRef90	UHGV-0173718_7	UniRef90_UPI001B02B074	64.7	0.0000000000183	phage head closure protein	N/A
eggNOG-mapper	UHGV-0173718_7	1094508.Tsac_2422	53.5	0.0000000802	Phage head-tail joining protein	N/A
Pfam	UHGV-0173718_7	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0173718_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0173718_7	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0173718_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173718_8	1094508.Tsac_2420	58.9	0.000000000805	N/A	N/A
structural_annotation	UHGV-0173718_8	PF05657	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173718_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_10	phrog_88	81.7	1e-23	major tail protein	tail
UniRef90	UHGV-0173718_10	UniRef90_S0FUN2	110.0	5.88e-27	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0173718_10	1195236.CTER_5106	110.0	9.86e-28	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0173718_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0173718_10	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173718_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173718_11	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0173718_12	K10421	45.4	0.00000000000058	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0173718_12	phrog_33680	146.2	2.10195e-43	N/A	unknown function
UniRef90	UHGV-0173718_12	UniRef90_A0A1M6L1P7	173.0	4.54021e-42	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0173718_12	1195236.CTER_5104	174.0	4.90454e-44	nuclear chromosome segregation	N/A
COG	UHGV-0173718_12	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0173718_12	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_13	phrog_37549	80.9	9.2e-24	virion structural protein	head and packaging
UniRef90	UHGV-0173718_13	UniRef90_A0A3D0W045	199.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0173718_13	1195236.CTER_5103	131.0	4.22e-29	N/A	N/A
structural_annotation	UHGV-0173718_13	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_14	phrog_26795	140.5	3.39955e-42	N/A	unknown function
UniRef90	UHGV-0173718_14	UniRef90_A0A5J6T4K8	150.0	2.06e-38	Minor tail protein	N/A
eggNOG-mapper	UHGV-0173718_14	1195236.CTER_5102	144.0	4.51e-37	N/A	N/A
structural_annotation	UHGV-0173718_14	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173718_15	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_18	phrog_10898	276.1	0	N/A	unknown function
UniRef90	UHGV-0173718_18	UniRef90_A0A7U3NJT3	197.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0173718_18	717606.PaecuDRAFT_2136	72.8	0.00000000000549	S-layer homology domain	N/A
COG	UHGV-0173718_18	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-0173718_18	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173718_19	PF16408,NF033510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173718_20	1519439.JPJG01000060_gene1892	157.0	3.08986e-42	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0173718_20	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0173718_22	phrog_10993	89.8	3e-26	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0173718_22	UniRef90_A0A350TI55	100.0	3.01e-21	N/A	N/A
eggNOG-mapper	UHGV-0173718_22	718252.FP2_16970	89.7	3.59e-18	N/A	N/A
Pfam	UHGV-0173718_22	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0173718_22	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173718_23	1519439.JPJG01000060_gene1895	123.0	4.73e-33	N/A	N/A
structural_annotation	UHGV-0173718_23	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_27	phrog_6918	96.0	2.6e-28	holin	lysis
UniRef90	UHGV-0173718_27	UniRef90_A0A316QCY7	102.0	2.45e-26	Holin	N/A
eggNOG-mapper	UHGV-0173718_27	1297617.JPJD01000020_gene301	101.0	1.71e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0173718_27	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0173718_27	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173718_28	UniRef90_A0A358M2Y7	221.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173718_28	525254.HMPREF0072_1273	212.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0173718_28	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0173718_28	NF033743	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173718_32	UniRef90_A0A7M1RTM1	78.2	0.00000000000000589	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0173718_32	1378168.N510_03079	68.2	0.0000000000145	N/A	N/A
KOfam	UHGV-0173718_33	K06400	377.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0173718_33	phrog_95	365.8	0	integrase	integration and excision
UniRef90	UHGV-0173718_33	UniRef90_UPI0019572FB3	501.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0173718_33	1235835.C814_00825	378.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0173718_33	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0173718_33	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0173718_33	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0173718_33	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0173718_33	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0173718_34	K22299	46.6	0.00000000000079	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0173718_34	phrog_8	43.9	0.0000000000052	transcriptional regulator	transcription regulation
Pfam	UHGV-0173718_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0173718_34	COG0662	N/A	N/A	Mannose-6-phosphate isomerase, cupin superfamily	N/A
structural_annotation	UHGV-0173718_34	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_35	phrog_10292	75.9	5.7e-22	N/A	unknown function
UniRef90	UHGV-0173718_35	UniRef90_UPI00101CA94E	105.0	2.04e-26	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173718_35	1198452.Jab_1c20720	90.5	1.71e-21	TM2 domain	N/A
Pfam	UHGV-0173718_35	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0173718_35	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0173718_35	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0173718_36	K18830	55.7	0.0000000000000014	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0173718_36	phrog_8	55.7	8.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0173718_36	UniRef90_A0A2U1BEG8	127.0	2.48e-35	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0173718_36	445972.ANACOL_03315	115.0	1.21e-31	N/A	N/A
PADLOC	UHGV-0173718_36	retron_type_VI_hth_cluster2_1	42.1	0.000000000022	N/A	Retron
Pfam	UHGV-0173718_36	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0173718_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173718_36	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173718_44	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173718_45	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_50	phrog_9298	62.5	5.2e-18	radical SAM domain protein	other
UniRef90	UHGV-0173718_50	UniRef90_D4C6F1	310.0	0	Elp3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173718_50	742738.HMPREF9460_03770	292.0	0	radical SAM domain protein	N/A
COG	UHGV-0173718_50	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0173718_50	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173718_51	UniRef90_UPI001C10265C	90.5	3.7e-21	N/A	N/A
Pfam	UHGV-0173718_51	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0173718_51	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_52	phrog_3136	123.9	5e-37	N/A	unknown function
UniRef90	UHGV-0173718_52	UniRef90_UPI001C00EDA4	131.0	5.73e-36	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0173718_52	642492.Clole_1416	52.0	0.0000021	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0173718_52	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0173718_52	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0173718_52	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_53	phrog_5781	72.8	5.1e-21	N/A	unknown function
UniRef90	UHGV-0173718_53	UniRef90_R5AT00	120.0	1.95e-33	Gp57	N/A
eggNOG-mapper	UHGV-0173718_53	573061.Clocel_3558	86.7	7.13e-21	N/A	N/A
Pfam	UHGV-0173718_53	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0173718_53	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0173718_53	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_54	phrog_38832	55.5	1.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0173718_54	445972.ANACOL_00165	72.8	0.000000000000101	N/A	N/A
structural_annotation	UHGV-0173718_54	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_58	phrog_190	103.8	1.8e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173718_58	UniRef90_UPI0006C2AC63	130.0	4.01e-36	N/A	N/A
eggNOG-mapper	UHGV-0173718_58	1226322.HMPREF1545_00295	116.0	4.05e-31	N/A	N/A
Pfam	UHGV-0173718_58	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0173718_58	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_59	phrog_374	74.3	2.5e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0173718_59	756499.Desde_1078	72.4	0.000000000000972	N/A	N/A
PHROG	UHGV-0173718_61	phrog_2245	92.1	6e-27	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0173718_61	UniRef90_A0A4U9RLZ8	60.1	0.00000000137	N/A	N/A
eggNOG-mapper	UHGV-0173718_61	1567010.A0A0A7RU90_9VIRU	59.7	0.000000000874	protein disulfide oxidoreductase activity	N/A
structural_annotation	UHGV-0173718_64	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_65	phrog_23224	56.2	2.3e-17	DNA methyltransferase	other
UniRef90	UHGV-0173718_65	UniRef90_UPI001E30CE28	183.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0173718_65	1268240.ATFI01000007_gene431	110.0	3.12e-27	DNA methylase	N/A
PADLOC	UHGV-0173718_65	MTase_II_00172	45.2	0.0000000000015	Type II methyltransferase	RM
COG	UHGV-0173718_65	COG0863	N/A	N/A	DNA modification methylase	N/A
PHROG	UHGV-0173718_66	phrog_3584	111.4	8.2e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0173718_66	537013.CLOSTMETH_02141	67.8	0.0000000000411	N/A	N/A
structural_annotation	UHGV-0173718_66	PF21578,MF_00360	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173718_67	1297617.JPJD01000059_gene2640	84.7	3.61e-19	N/A	N/A
structural_annotation	UHGV-0173718_67	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0173718_68	phrog_119	49.1	0.000000000000082	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173718_68	UniRef90_A0A174XSZ8	124.0	8.01e-35	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-0173718_68	1235793.C809_01915	116.0	5.48e-32	HNH endonuclease	N/A
Pfam	UHGV-0173718_68	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0173718_68	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A