UHGV-0174773 (vOTU-019623)

Viral Genome: UHGV-0174773

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0174773
vOTU ID	vOTU-019623
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_592148
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.61 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9623
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.26
Jumbo phage	No

Genome content
Genome length (bp)	36,550
GC content	49.37%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	96%
Average CDS length (bps)	702.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0174773_2	1203606.HMPREF1526_02741	85.1	5.26e-16	N/A	N/A
PHROG	UHGV-0174773_4	phrog_511	171.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0174773_4	1410650.JHWL01000003_gene2827	261.0	0	N/A	N/A
structural_annotation	UHGV-0174773_4	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0174773_5	phrog_12105	110.8	9.1e-33	N/A	unknown function
PHROG	UHGV-0174773_6	phrog_15239	50.0	0.000000000000048	N/A	unknown function
PHROG	UHGV-0174773_7	phrog_1357	258.6	0	major head protein	head and packaging
UniRef90	UHGV-0174773_7	UniRef90_A0A2V2GQW4	466.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0174773_7	1449126.JQKL01000003_gene1695	337.0	0	N/A	N/A
Pfam	UHGV-0174773_7	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0174773_7	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0174773_7	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0174773_8	phrog_13908	210.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0174773_8	1410650.JHWL01000003_gene2831	94.7	1.19e-19	N/A	N/A
Pfam	UHGV-0174773_9	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0174773_9	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0174773_10	phrog_156	291.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0174773_10	748224.HMPREF9436_01396	518.0	0	N/A	N/A
structural_annotation	UHGV-0174773_10	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0174773_11	phrog_28563	52.9	0.0000000000000058	N/A	unknown function
UniRef90	UHGV-0174773_11	UniRef90_A0A7G9GB56	90.9	3.6e-22	INTEIN_C_TER domain-containing protein	N/A
NCBIFam	UHGV-0174773_11	TIGR01443.1	N/A	N/A	intein C-terminal splicing region	N/A
PHROG	UHGV-0174773_12	phrog_15471	112.5	3.4e-33	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174773_12	UniRef90_A0A6P0ZI06	129.0	1.47e-34	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0174773_12	1141106.CAIB01000133_gene1117	106.0	3.11e-26	HNH endonuclease	N/A
Pfam	UHGV-0174773_12	PF13392	N/A	N/A	HNH endonuclease	HNH_3
KOfam	UHGV-0174773_13	K06909	111.9	7e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0174773_13	phrog_979	135.3	1.70006e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0174773_13	UniRef90_A0A2V2GR60	667.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0174773_13	1410650.JHWL01000003_gene2834	599.0	0	N/A	N/A
Pfam	UHGV-0174773_13	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0174773_13	TIGR01445.1	N/A	N/A	intein N-terminal splicing region	N/A
COG	UHGV-0174773_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0174773_13	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0174773_14	phrog_4481	40.4	0.000000000037	N/A	unknown function
structural_annotation	UHGV-0174773_16	PF01381,NF040522,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0174773_17	phrog_190	122.7	2.8e-36	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174773_17	UniRef90_A0A6N7XIA3	140.0	2.89999e-41	N/A	N/A
eggNOG-mapper	UHGV-0174773_17	563031.HMPREF0666_01122	109.0	1.83e-29	N/A	N/A
Pfam	UHGV-0174773_17	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0174773_17	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0174773_19	K01520	139.0	3.89995e-41	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0174773_19	phrog_135	117.9	7.3e-35	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174773_19	UniRef90_A0A6A2VG41	164.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0174773_19	887929.HMP0721_1278	154.0	0	dUTPase	N/A
Pfam	UHGV-0174773_19	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0174773_19	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0174773_19	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0174773_19	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0174773_20	phrog_23660	44.0	0.0000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0174773_20	1226322.HMPREF1545_03534	63.9	0.0000000000302	N/A	N/A
PHROG	UHGV-0174773_23	phrog_11769	170.7	0	N/A	unknown function
UniRef90	UHGV-0174773_23	UniRef90_A0A173RDT0	172.0	0	Phage replisome organizer, putative, N-terminal region	N/A
eggNOG-mapper	UHGV-0174773_23	536232.CLM_1634	160.0	4.2039e-45	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0174773_23	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0174773_23	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0174773_23	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-0174773_24	phrog_3136	137.7	3.89995e-41	N/A	unknown function
UniRef90	UHGV-0174773_24	UniRef90_UPI001A9A8D4F	118.0	2.15e-30	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0174773_24	1235793.C809_02645	80.9	5.02e-16	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0174773_24	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0174773_24	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0174773_24	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0174773_25	phrog_13321	58.1	4.6e-17	N/A	unknown function
UniRef90	UHGV-0174773_25	UniRef90_UPI00030D2C45	316.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-0174773_25	1007096.BAGW01000031_gene122	316.0	0	PFAM Radical SAM	N/A
Pfam	UHGV-0174773_25	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-0174773_25	COG1533	N/A	N/A	DNA repair photolyase	N/A
structural_annotation	UHGV-0174773_25	PF20903,MF_00917,NF033668,COG4422	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0174773_28	1235792.C808_01244	184.0	0	N/A	N/A
KOfam	UHGV-0174773_29	K03111	125.0	1e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0174773_29	phrog_44	138.7	3.89995e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174773_29	UniRef90_R6E141	126.0	1.17e-34	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0174773_29	1235835.C814_01372	114.0	9.97e-31	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0174773_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0174773_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0174773_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0174773_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0174773_29	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0174773_31	phrog_4973	49.7	0.000000000000059	N/A	unknown function
UniRef90	UHGV-0174773_31	UniRef90_A0A1W1YSW9	65.9	0.00000000000305	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0174773_31	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0174773_31	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0174773_33	phrog_72	53.8	0.0000000000000019	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174773_33	UniRef90_A0A8D9PDS2	144.0	1.63e-40	NinB protein	N/A
eggNOG-mapper	UHGV-0174773_33	445972.ANACOL_01825	128.0	5.42e-35	N/A	N/A
structural_annotation	UHGV-0174773_33	PF05772,NF007281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0174773_34	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0174773_35	UniRef90_A0A845QLQ8	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-0174773_35	33035.JPJF01000135_gene5082	172.0	0	N/A	N/A
Pfam	UHGV-0174773_35	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0174773_35	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0174773_39	PF13973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0174773_40	PF20549,MF_01194,NF037951,COG4481	N/A	N/A	N/A	N/A
KOfam	UHGV-0174773_41	K07729	44.0	0.0000000000046	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0174773_41	UniRef90_A0A2A6Z721	74.7	0.00000000000000162	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0174773_41	1132442.KB889752_gene869	61.2	0.0000000000766	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0174773_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0174773_42	K01356	143.2	3.09967e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0174773_42	phrog_4	129.7	2.9e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-0174773_42	UniRef90_A0A173XHX2	259.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0174773_42	411473.RUMCAL_03095	189.0	0	N/A	N/A
PADLOC	UHGV-0174773_42	retron_type_VI_hth_cluster2_1	51.9	0.000000000000017	N/A	Retron
Pfam	UHGV-0174773_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0174773_42	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0174773_42	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0174773_42	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
COG	UHGV-0174773_44	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0174773_46	K14059	266.4	0	int; integrase	N/A
PHROG	UHGV-0174773_46	phrog_1	167.4	0	integrase	integration and excision
UniRef90	UHGV-0174773_46	UniRef90_A0A3D1LE04	419.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0174773_46	877411.JMMA01000002_gene2540	355.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0174773_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0174773_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0174773_46	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0174773_46	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0174773_47	phrog_199	80.4	2.1e-23	holin	lysis
UniRef90	UHGV-0174773_47	UniRef90_UPI001D11111C	184.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0174773_47	742740.HMPREF9474_02333	186.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0174773_47	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0174773_47	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0174773_47	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0174773_47	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0174773_48	K07273	170.2	0	acm; lysozyme	N/A
PHROG	UHGV-0174773_48	phrog_291	155.1	0	endolysin	lysis
UniRef90	UHGV-0174773_48	UniRef90_UPI0008713C11	159.0	4.30058e-42	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0174773_48	1111121.HMPREF1247_1247	155.0	2.03006e-41	PFAM glycoside hydrolase, family 10	N/A
Pfam	UHGV-0174773_48	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0174773_48	PF00404	N/A	N/A	Dockerin type I domain	Dockerin_1
COG	UHGV-0174773_48	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
Pfam	UHGV-0174773_49	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N