UHGV-0175101 (vOTU-069112)

Viral Genome: UHGV-0175101

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0175101
vOTU ID	vOTU-069112
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_591890
Associated BioSample	SAMN09781733
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.95 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9789
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.7
Jumbo phage	No

Genome content
Genome length (bp)	33,172
GC content	60.56%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	95%
Average CDS length (bps)	594.91
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.95)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0175101_1	phrog_9	257.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0175101_1	UniRef90_A0A3D1VAR5	740.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0175101_1	1226322.HMPREF1545_00113	688.0	0	Phage Terminase	N/A
Pfam	UHGV-0175101_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
Pfam	UHGV-0175101_1	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0175101_1	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0175101_1	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
PHROG	UHGV-0175101_2	phrog_12	186.0	0	portal protein	head and packaging
UniRef90	UHGV-0175101_2	UniRef90_U2SKC6	577.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0175101_2	1226322.HMPREF1545_00114	577.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0175101_2	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0175101_2	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0175101_2	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0175101_2	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0175101_3	K06904	151.1	9.80909e-45	N/A	N/A
PHROG	UHGV-0175101_3	phrog_80	180.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0175101_3	UniRef90_A0A1F2PDD9	242.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0175101_3	398512.JQKC01000009_gene450	224.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0175101_3	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0175101_3	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0175101_3	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0175101_3	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_4	phrog_10	202.8	0	major head protein	head and packaging
UniRef90	UHGV-0175101_4	UniRef90_A0A1C6H720	691.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0175101_4	1226322.HMPREF1545_00116	647.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0175101_4	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0175101_4	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0175101_4	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0175101_4	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_5	phrog_2550	57.5	1.6e-16	N/A	unknown function
UniRef90	UHGV-0175101_5	UniRef90_UPI0008717716	80.9	6.82e-18	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0175101_5	1226322.HMPREF1545_00117	91.7	6.61e-23	N/A	N/A
structural_annotation	UHGV-0175101_5	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_6	phrog_19734	49.2	0.0000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0175101_6	33035.JPJF01000039_gene275	49.7	0.00000495	N/A	N/A
structural_annotation	UHGV-0175101_6	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_7	phrog_78	42.4	0.000000000013	tail terminator	connector
eggNOG-mapper	UHGV-0175101_7	908340.HMPREF9406_2574	74.3	6.5e-16	N/A	N/A
structural_annotation	UHGV-0175101_7	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_8	phrog_5	53.1	0.0000000000000068	tail completion or Neck1 protein	connector
UniRef90	UHGV-0175101_8	UniRef90_A0A1C6FG30	147.0	4.40989e-42	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0175101_8	908340.HMPREF9406_2573	145.0	1.76003e-42	N/A	N/A
NCBIFam	UHGV-0175101_8	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0175101_8	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_9	phrog_21498	295.0	0	N/A	unknown function
UniRef90	UHGV-0175101_9	UniRef90_A0A4Q5AKJ0	233.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0175101_9	78346.BRUM_0376	265.0	0	DNA binding	N/A
COG	UHGV-0175101_9	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0175101_9	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_10	phrog_88	106.4	1.6e-31	major tail protein	tail
UniRef90	UHGV-0175101_10	UniRef90_UPI0018771F27	276.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0175101_10	33035.JPJF01000039_gene278	117.0	3.36e-30	N/A	N/A
NCBIFam	UHGV-0175101_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0175101_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_11	phrog_2115	42.2	0.000000000016	tail protein	tail
structural_annotation	UHGV-0175101_11	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0175101_13	K10398	44.4	0.0000000000011	KIF11, EG5; kinesin family member 11	N/A
PHROG	UHGV-0175101_13	phrog_6900	268.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0175101_13	UniRef90_A0A373CK98	307.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-0175101_13	1216932.CM240_0625	333.0	0	tape measure	N/A
COG	UHGV-0175101_13	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0175101_13	COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175101_14	1235797.C816_02660	108.0	5.85e-29	N/A	N/A
structural_annotation	UHGV-0175101_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_15	phrog_13879	536.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0175101_15	1235797.C816_02659	707.0	0	N/A	N/A
structural_annotation	UHGV-0175101_15	PF14594,PF06588,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
KOfam	UHGV-0175101_17	K01361	59.3	2.7e-17	E3.4.21.96; lactocepin [EC:3.4.21.96]	N/A
PHROG	UHGV-0175101_17	phrog_11157	237.3	0	N/A	unknown function
UniRef90	UHGV-0175101_17	UniRef90_UPI001C10C6DC	394.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0175101_17	33035.JPJF01000023_gene3227	291.0	0	N/A	N/A
Pfam	UHGV-0175101_17	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0175101_17	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
NCBIFam	UHGV-0175101_17	NF033510.3	N/A	N/A	Ca2+-stabilized repeat-containing adhesin	N/A
COG	UHGV-0175101_17	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0175101_17	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_18	phrog_18725	104.0	6.8e-31	N/A	unknown function
eggNOG-mapper	UHGV-0175101_18	693746.OBV_18220	143.0	1.07999e-40	N/A	N/A
structural_annotation	UHGV-0175101_18	PF13754,COG2372	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175101_20	UniRef90_A0A8J6JIT9	55.5	0.0000000505	Toxin-antitoxin system toxin subunit	N/A
eggNOG-mapper	UHGV-0175101_20	657322.FPR_21910	53.9	0.00000022	N/A	N/A
UniRef90	UHGV-0175101_21	UniRef90_A0A1Y3Z0U4	54.7	0.00000000359	XkdX family protein (Fragment)	N/A
structural_annotation	UHGV-0175101_21	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_22	phrog_1863	66.9	1.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0175101_22	748224.HMPREF9436_00408	99.0	2.84e-26	N/A	N/A
PHROG	UHGV-0175101_24	phrog_1129	71.3	9.5e-21	holin	lysis
UniRef90	UHGV-0175101_24	UniRef90_A0A416QZD1	123.0	6.37e-35	Enolase	N/A
eggNOG-mapper	UHGV-0175101_24	693746.OBV_13280	122.0	3.44e-35	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0175101_24	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0175101_24	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0175101_25	K01448	128.3	8e-38	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0175101_25	phrog_435	128.7	5.4e-38	endolysin	lysis
UniRef90	UHGV-0175101_25	UniRef90_A0A329MTH0	84.7	0.0000000000000225	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0175101_25	1305836.AXVE01000003_gene2376	106.0	5.48e-23	Ami_3	N/A
Pfam	UHGV-0175101_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0175101_25	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0175101_25	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0175101_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0175101_25	PF01520,PF09992,PF01471,MF_00562,TIGR02883,COG0860,COG4632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_26	phrog_25567	59.6	4.3e-17	N/A	unknown function
UniRef90	UHGV-0175101_26	UniRef90_UPI00164AED9E	115.0	2.51e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0175101_26	877424.ATWC01000004_gene577	52.0	0.00000311	sequence-specific DNA binding	N/A
Pfam	UHGV-0175101_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0175101_26	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0175101_26	NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0175101_29	K14059	182.9	0	int; integrase	N/A
PHROG	UHGV-0175101_29	phrog_1	167.1	0	integrase	integration and excision
UniRef90	UHGV-0175101_29	UniRef90_A0A174HFN7	360.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0175101_29	1226322.HMPREF1545_00144	212.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0175101_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0175101_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0175101_29	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175101_30	UniRef90_A0A6J6I5H7	68.6	0.0000000000000268	Unannotated protein	N/A
eggNOG-mapper	UHGV-0175101_30	483216.BACEGG_01163	57.4	0.000000000106	N/A	N/A
KOfam	UHGV-0175101_31	K22300	46.4	0.00000000000073	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0175101_31	UniRef90_A0A212J3J9	86.3	1.66e-19	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0175101_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0175101_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0175101_31	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0175101_32	K22300	41.1	0.000000000033	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0175101_32	phrog_8	42.6	0.000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0175101_32	UniRef90_A0A810PZI0	97.8	1.53e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0175101_32	552398.HMPREF0866_01544	56.2	0.0000000158	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0175101_32	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0175101_32	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0175101_32	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175101_35	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_39	phrog_270	66.2	7e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175101_39	UniRef90_A0A8J6MF41	170.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0175101_39	693746.OBV_19830	127.0	6.51e-33	DnaD domain protein	N/A
Pfam	UHGV-0175101_39	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0175101_39	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0175101_39	PF20714,MF_01177,NF040582,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0175101_40	K02314	249.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0175101_40	phrog_19	206.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175101_40	UniRef90_A0A3A8Z521	322.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0175101_40	1007096.BAGW01000033_gene1616	281.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0175101_40	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0175101_40	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0175101_40	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0175101_40	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0175101_41	K01520	137.3	1.2e-40	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0175101_41	phrog_135	113.1	1.9e-33	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175101_41	UniRef90_UPI001D07FBC5	201.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0175101_41	887929.HMP0721_1278	168.0	0	dUTPase	N/A
Pfam	UHGV-0175101_41	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0175101_41	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0175101_41	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0175101_41	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0175101_42	K00558	91.3	1.9e-32	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0175101_42	phrog_17284	129.3	0	N/A	unknown function
UniRef90	UHGV-0175101_42	UniRef90_A0A1Q6JM75	648.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0175101_42	1235797.C816_01614	565.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0175101_42	MTase_II_00058	55.1	6.3e-27	Type II methyltransferase	RM
Pfam	UHGV-0175101_42	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0175101_42	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0175101_42	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175101_43	NF040540	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175101_45	PF02882,MF_01576,NF010775,COG0190	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_46	phrog_478	119.7	1.3e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0175101_46	UniRef90_A0A373Q857	169.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0175101_46	324057.Pjdr2_1537	97.4	2.64e-24	N/A	N/A
eggNOG-mapper	UHGV-0175101_48	318464.IO99_07375	90.5	2.44e-22	N/A	N/A
structural_annotation	UHGV-0175101_49	PF02796,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0175101_50	K03111	147.0	2.00386e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0175101_50	phrog_44	133.8	1.2e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175101_50	UniRef90_A0A6G3LWP4	199.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0175101_50	1378168.N510_01674	189.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0175101_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0175101_50	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0175101_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0175101_50	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0175101_50	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_52	phrog_3584	78.5	8.6e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0175101_52	742738.HMPREF9460_04063	288.0	0	N/A	N/A
structural_annotation	UHGV-0175101_52	PF01446	N/A	N/A	N/A	N/A
PHROG	UHGV-0175101_53	phrog_119	66.4	4.1e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175101_53	UniRef90_A0A316P1K8	131.0	7.16e-38	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0175101_53	588581.Cpap_1277	121.0	1.2e-34	HNH nucleases	N/A
COG	UHGV-0175101_53	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A