UHGV-0175132 (vOTU-106465)

Viral Genome: UHGV-0175132

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0175132
vOTU ID	vOTU-106465
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_586837
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.03 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.93
Jumbo phage	No

Genome content
Genome length (bp)	39,124
GC content	45.01%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	92%
Average CDS length (bps)	749.44
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 84.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0175132_2	K06909	88.3	1e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0175132_2	phrog_2	159.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0175132_2	UniRef90_UPI001D00EC11	403.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0175132_2	568816.Acin_1836	417.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-0175132_2	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0175132_2	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0175132_2	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_4	phrog_332	433.9	0	head-tail adaptor	connector
UniRef90	UHGV-0175132_4	UniRef90_UPI001F3F9DD9	538.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0175132_4	568816.Acin_1834	597.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0175132_4	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0175132_4	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_5	phrog_528	105.9	1.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0175132_5	1401067.HMPREF0872_06805	95.9	5.94e-24	N/A	N/A
PHROG	UHGV-0175132_6	phrog_458	155.2	0	protease	other
eggNOG-mapper	UHGV-0175132_6	568816.Acin_1832	96.7	7.76e-22	N/A	N/A
PHROG	UHGV-0175132_7	phrog_212	204.6	0	major head protein	head and packaging
UniRef90	UHGV-0175132_7	UniRef90_A0A6J5KPX9	218.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0175132_7	568816.Acin_1831	353.0	0	N/A	N/A
Pfam	UHGV-0175132_7	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0175132_7	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_8	phrog_427	66.0	5.8e-19	N/A	unknown function
structural_annotation	UHGV-0175132_8	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_9	phrog_394	156.5	0	tail protein	tail
UniRef90	UHGV-0175132_9	UniRef90_A0A0U1KW64	125.0	9.16e-33	N/A	N/A
eggNOG-mapper	UHGV-0175132_9	1123288.SOV_1c10710	125.0	1.54e-33	N/A	N/A
structural_annotation	UHGV-0175132_9	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_10	phrog_376	612.2	0	tail protein	tail
UniRef90	UHGV-0175132_10	UniRef90_A0A0U1KV93	357.0	0	N/A	N/A
eggNOG-mapper	UHGV-0175132_10	568816.Acin_1828	687.0	0	N/A	N/A
structural_annotation	UHGV-0175132_10	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_11	phrog_308	104.8	7.4e-31	internal virion protein	head and packaging
structural_annotation	UHGV-0175132_11	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_12	phrog_418	130.1	4.4e-39	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0175132_12	568816.Acin_1826	105.0	1.79e-25	N/A	N/A
structural_annotation	UHGV-0175132_12	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_13	phrog_10475	45.8	0.0000000000004	endolysin	lysis
UniRef90	UHGV-0175132_13	UniRef90_A0A1Q6RQM5	1233.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0175132_13	1123288.SOV_2c10740	193.0	0	N/A	N/A
Pfam	UHGV-0175132_13	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
structural_annotation	UHGV-0175132_13	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_14	phrog_9880	492.8	0	N/A	unknown function
UniRef90	UHGV-0175132_14	UniRef90_A0A1Q6RQR6	4553.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0175132_14	1123288.SOV_1c10750	182.0	7.03452e-43	N/A	N/A
Pfam	UHGV-0175132_14	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-0175132_15	phrog_1640	59.2	8.5e-17	tail protein	tail
eggNOG-mapper	UHGV-0175132_15	1123288.SOV_1c10770	81.6	0.000000000000647	Right handed beta helix region	N/A
COG	UHGV-0175132_15	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-0175132_15	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_17	phrog_2837	58.0	1.7e-16	tail protein	tail
UniRef90	UHGV-0175132_17	UniRef90_A0A1Q6R2G9	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-0175132_17	1286631.X805_38770	62.8	0.00000000101	N/A	N/A
Pfam	UHGV-0175132_17	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0175132_17	PF14301,COG1382	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_18	phrog_4105	82.7	3.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0175132_18	537013.CLOSTMETH_01753	80.1	3.67e-18	N/A	N/A
eggNOG-mapper	UHGV-0175132_20	1392502.JNIO01000008_gene1280	230.0	0	N/A	N/A
structural_annotation	UHGV-0175132_20	PF21277	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175132_23	UniRef90_A0A316S6W0	100.0	2.52e-26	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-0175132_23	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0175132_23	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0175132_23	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_24	phrog_21718	44.6	0.0000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0175132_25	476272.RUMHYD_01953	49.7	0.00000062	N/A	N/A
PHROG	UHGV-0175132_26	phrog_16490	90.3	9.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-0175132_26	445972.ANACOL_01880	83.6	1.75e-16	N/A	N/A
structural_annotation	UHGV-0175132_27	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175132_28	1378168.N510_03079	58.2	0.0000000528	N/A	N/A
KOfam	UHGV-0175132_29	K14059	127.1	2.5e-37	int; integrase	N/A
PHROG	UHGV-0175132_29	phrog_1	140.3	1.79997e-41	integrase	integration and excision
UniRef90	UHGV-0175132_29	UniRef90_R6X1Y3	680.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0175132_29	1123250.KB908381_gene1631	329.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0175132_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0175132_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0175132_29	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0175132_31	K18830	68.5	1.5e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0175132_31	phrog_8	54.6	0.0000000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0175132_31	UniRef90_R6X1Y8	213.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0175132_31	1151292.QEW_0725	95.1	1.22e-23	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0175132_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0175132_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0175132_31	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_36	phrog_6058	77.3	1.2e-22	N/A	unknown function
UniRef90	UHGV-0175132_36	UniRef90_A0A0U9H7T0	60.1	0.000000000198	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-0175132_36	1280689.AUJC01000011_gene1497	68.9	0.0000000000000119	N/A	N/A
structural_annotation	UHGV-0175132_36	PF12728,TIGR01764	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175132_37	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_38	phrog_14367	69.9	1.8e-20	N/A	unknown function
UniRef90	UHGV-0175132_38	UniRef90_R6WTN1	212.0	0	Peptidoglycan-binding LysM	N/A
Pfam	UHGV-0175132_38	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0175132_38	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0175132_38	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_39	phrog_434	329.6	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175132_39	UniRef90_R6WGP6	594.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0175132_39	706434.HMPREF9429_00770	362.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-0175132_39	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0175132_39	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0175132_39	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0175132_39	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175132_40	UniRef90_R6WLK2	130.0	7.4e-38	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0175132_40	457421.CBFG_03225	51.2	0.000000811	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0175132_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0175132_40	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0175132_40	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0175132_41	K07455	201.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0175132_41	phrog_148	210.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175132_41	UniRef90_R6XVK6	358.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-0175132_41	525257.HMPREF0204_11404	205.0	0	RecT family	N/A
Pfam	UHGV-0175132_41	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0175132_41	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0175132_41	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0175132_41	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_43	phrog_5968	152.1	2.8026e-45	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175132_43	UniRef90_R6WTP4	192.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-0175132_43	1211817.CCAT010000007_gene1058	127.0	2.65e-32	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0175132_43	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0175132_43	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0175132_43	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0175132_43	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175132_45	1540092.A0A0A0RSY9_9CAUD	51.6	0.00000452	transferase activity, transferring alkyl or aryl (other than methyl) groups	N/A
PHROG	UHGV-0175132_47	phrog_10714	63.4	3.7e-18	N/A	unknown function
structural_annotation	UHGV-0175132_47	PF21173	N/A	N/A	N/A	N/A
PHROG	UHGV-0175132_48	phrog_7713	53.4	0.0000000000000032	N/A	unknown function
Pfam	UHGV-0175132_48	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
structural_annotation	UHGV-0175132_48	PF00805	N/A	N/A	N/A	N/A