UHGV-0175771 (vOTU-062758)

Viral Genome: UHGV-0175771

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0175771
vOTU ID	vOTU-062758
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_571966
Associated BioSample	SAMN06348136
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.93 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9644
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.31
Jumbo phage	No

Genome content
Genome length (bp)	31,993
GC content	37.64%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	93%
Average CDS length (bps)	678.82
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 90.93)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0175771_1	K14059	217.0	0	int; integrase	N/A
PHROG	UHGV-0175771_1	phrog_1	189.7	0	integrase	integration and excision
UniRef90	UHGV-0175771_1	UniRef90_A0A2N0ULT2	465.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0175771_1	428125.CLOLEP_02743	317.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0175771_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0175771_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0175771_1	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_2	phrog_15667	108.1	7.00649e-44	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0175771_2	UniRef90_UPI0003FA72B7	61.6	0.000000171	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-0175771_2	658086.HMPREF0994_06731	91.7	5.31e-18	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0175771_2	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0175771_2	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0175771_2	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
UniRef90	UHGV-0175771_3	UniRef90_A0A374DTF3	101.0	1.46e-24	N/A	N/A
UniRef90	UHGV-0175771_4	UniRef90_A0A374E958	63.2	0.0000000000126	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0175771_4	1232443.BAIA02000106_gene3117	70.9	0.000000000000014	N/A	N/A
structural_annotation	UHGV-0175771_4	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0175771_5	K22299	66.6	5.4e-19	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0175771_5	phrog_8	70.5	3.3e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0175771_5	UniRef90_A0A412L7U4	197.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0175771_5	1111454.HMPREF1250_1028	94.7	1.36e-23	carbohydrate binding	N/A
PADLOC	UHGV-0175771_5	retron_type_VI_hth_cluster2_1	64.6	1.7e-18	N/A	Retron
Pfam	UHGV-0175771_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0175771_5	COG2390	N/A	N/A	DNA-binding transcriptional regulator LsrR, DeoR family	N/A
structural_annotation	UHGV-0175771_5	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0175771_6	K07729	60.2	5e-17	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0175771_6	phrog_8	51.4	0.000000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-0175771_6	UniRef90_A0A412L7W1	103.0	1.25e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0175771_6	1132442.KB889752_gene869	63.9	0.00000000000116	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0175771_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0175771_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_8	phrog_2232	215.8	0	N/A	unknown function
UniRef90	UHGV-0175771_8	UniRef90_UPI00164B82D7	459.0	0	N/A	N/A
eggNOG-mapper	UHGV-0175771_8	748224.HMPREF9436_01448	154.0	1.44053e-42	N/A	N/A
Pfam	UHGV-0175771_8	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
structural_annotation	UHGV-0175771_8	PF14337,TIGR03899	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175771_9	UniRef90_UPI0005510EBF	65.5	0.00000000000241	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0175771_10	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_15	phrog_8470	241.2	0	N/A	unknown function
UniRef90	UHGV-0175771_15	UniRef90_A0A1M7BII1	158.0	3.88e-37	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-0175771_15	1235790.C805_00306	144.0	2.27e-33	PcfJ-like protein	N/A
Pfam	UHGV-0175771_15	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0175771_15	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_16	phrog_15609	125.1	2.1e-38	N/A	unknown function
UniRef90	UHGV-0175771_16	UniRef90_A0A373SLQ6	109.0	7.81e-24	N/A	N/A
eggNOG-mapper	UHGV-0175771_16	1514668.JOOA01000001_gene225	64.3	0.0000000105	N/A	N/A
Pfam	UHGV-0175771_16	PF11300	N/A	N/A	N/A	DUF3102
structural_annotation	UHGV-0175771_16	PF11300,NF038070	N/A	N/A	N/A	N/A
KOfam	UHGV-0175771_17	K03427	168.6	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0175771_17	phrog_6380	369.1	0	DNA methyltransferase	other
UniRef90	UHGV-0175771_17	UniRef90_UPI001B3C6DA9	663.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0175771_17	1444306.JFZC01000034_gene2643	308.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0175771_17	MTase_I_00010	98.9	5.4e-29	Type I methyltransferase	RM
Pfam	UHGV-0175771_17	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0175771_17	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0175771_17	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_19	phrog_24518	80.3	2.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0175771_19	1519439.JPJG01000077_gene922	90.9	3.65e-20	N/A	N/A
PHROG	UHGV-0175771_20	phrog_824	146.4	8.26766e-44	N/A	unknown function
UniRef90	UHGV-0175771_20	UniRef90_A0A3D3D6C6	201.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0175771_20	397288.C806_00096	154.0	0	VRR_NUC	N/A
Pfam	UHGV-0175771_20	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0175771_20	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_22	phrog_3584	147.6	7.84727e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0175771_22	1235800.C819_00515	85.9	3.65e-17	N/A	N/A
structural_annotation	UHGV-0175771_22	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175771_23	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_24	phrog_5110	82.8	3.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0175771_24	UniRef90_UPI00057D0A7C	113.0	1.2e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0175771_24	86416.Clopa_0336	106.0	1.56e-28	N/A	N/A
Pfam	UHGV-0175771_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0175771_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_25	phrog_9	284.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0175771_25	UniRef90_A0A412UM03	981.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0175771_25	86416.Clopa_0337	621.0	0	Phage Terminase	N/A
Pfam	UHGV-0175771_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0175771_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0175771_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0175771_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_26	phrog_12	103.2	2.1e-30	portal protein	head and packaging
UniRef90	UHGV-0175771_26	UniRef90_A0A412ULV9	571.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0175771_26	1415774.U728_1254	268.0	0	Phage portal protein	N/A
Pfam	UHGV-0175771_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0175771_26	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0175771_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0175771_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0175771_27	K01358	145.8	4.1058e-43	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0175771_27	phrog_94	212.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0175771_27	UniRef90_A0A412ULU1	383.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0175771_27	86416.Clopa_0340	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0175771_27	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0175771_27	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0175771_27	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_28	phrog_10	113.1	2.9e-33	major head protein	head and packaging
UniRef90	UHGV-0175771_28	UniRef90_A0A412ULW9	573.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0175771_28	1211817.CCAT010000053_gene2132	320.0	0	Phage capsid family	N/A
Pfam	UHGV-0175771_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0175771_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0175771_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0175771_28	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_29	phrog_749	51.9	0.000000000000012	N/A	unknown function
UniRef90	UHGV-0175771_29	UniRef90_A0A1G5CMX8	103.0	1.01e-26	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0175771_29	349161.Dred_2603	55.5	0.0000000128	N/A	N/A
PHROG	UHGV-0175771_30	phrog_19734	63.1	4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0175771_30	86416.Clopa_0343	52.8	0.000000292	N/A	N/A
structural_annotation	UHGV-0175771_30	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175771_31	698758.AXY_02180	61.6	0.0000000000786	N/A	N/A
structural_annotation	UHGV-0175771_31	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175771_32	UniRef90_UPI000E5564A4	173.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0175771_32	1118057.CAGX01000043_gene486	67.0	0.00000000000244	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-0175771_32	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_33	phrog_88	62.3	7.8e-18	major tail protein	tail
UniRef90	UHGV-0175771_33	UniRef90_A0A1G5CNS8	171.0	0	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0175771_33	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0175771_33	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175771_33	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175771_34	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0175771_36	K10402	50.3	0.0000000000000021	KIF20; kinesin family member 20	N/A
PHROG	UHGV-0175771_36	phrog_5218	238.8	0	N/A	unknown function
UniRef90	UHGV-0175771_36	UniRef90_UPI000E474EFE	608.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0175771_36	1235792.C808_03050	249.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0175771_36	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0175771_36	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0175771_36	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_37	phrog_33	62.3	1.3e-17	distal tail protein Dit	tail
UniRef90	UHGV-0175771_37	UniRef90_UPI00073F69EF	77.0	0.000000000000314	phage tail family protein	N/A
eggNOG-mapper	UHGV-0175771_37	1582149.A0A0A8WHP7_9CAUD	61.6	0.0000000206	Phage tail protein	N/A
structural_annotation	UHGV-0175771_37	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_38	phrog_1067	125.0	7e-37	minor head protein	head and packaging
UniRef90	UHGV-0175771_38	UniRef90_A0A1G5CPD2	159.0	1.79002e-41	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0175771_38	562981.HMPREF0428_00970	82.4	0.0000000000000463	Phage minor structural protein	N/A
NCBIFam	UHGV-0175771_38	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0175771_38	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175771_38	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175771_39	PF10651,PF00541,NF040788	N/A	N/A	N/A	N/A
KOfam	UHGV-0175771_41	K01447	118.9	5.7e-35	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0175771_41	phrog_833	186.1	0	endolysin	lysis
UniRef90	UHGV-0175771_41	UniRef90_R6MSP5	622.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0175771_41	428125.CLOLEP_01782	175.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0175771_41	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0175771_41	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0175771_41	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0175771_42	phrog_1863	79.0	3.5e-24	N/A	unknown function
UniRef90	UHGV-0175771_42	UniRef90_UPI001F223E8B	86.7	1.05e-20	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0175771_42	1226322.HMPREF1545_04027	64.7	0.000000000000802	N/A	N/A
PHROG	UHGV-0175771_43	phrog_443	48.8	0.00000000000019	holin	lysis
UniRef90	UHGV-0175771_43	UniRef90_R6MWB0	56.6	0.00000000397	Conserved domain protein	N/A
Pfam	UHGV-0175771_43	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0175771_43	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0175771_44	K22299	56.5	6.8e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0175771_44	phrog_8	49.4	0.0000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0175771_44	UniRef90_UPI0013141978	258.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0175771_44	1121334.KB911071_gene2073	70.5	0.0000000000001	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0175771_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0175771_44	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0175771_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A