UHGV-0175878 (vOTU-059907)

Viral Genome: UHGV-0175878

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0175878
vOTU ID	vOTU-059907
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_581670
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9674
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.54
Jumbo phage	No

Genome content
Genome length (bp)	38,252
GC content	57.75%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	94%
Average CDS length (bps)	589.77
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0175878_1	1408428.JNJP01000025_gene276	75.9	0.000000000000129	N/A	N/A
KOfam	UHGV-0175878_2	K02315	174.8	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0175878_2	phrog_50	163.2	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175878_2	UniRef90_A0A059WFK9	187.0	0	IstB-like ATP binding protein	N/A
eggNOG-mapper	UHGV-0175878_2	1476902.A0A067ZJ24_9CAUD	187.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0175878_2	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
structural_annotation	UHGV-0175878_2	PF01695,MF_01919,NF005931,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0175878_3	K03111	106.8	3.5e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0175878_3	phrog_44	94.5	1.6e-27	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175878_3	UniRef90_UPI000378B16C	112.0	1.11e-28	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0175878_3	1121459.AQXE01000010_gene1906	105.0	5.33e-27	PFAM single-strand binding protein Primosomal replication protein n	N/A
Pfam	UHGV-0175878_3	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0175878_3	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0175878_3	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0175878_3	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0175878_3	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0175878_4	phrog_824	152.7	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0175878_4	UniRef90_G1V4V4	136.0	2.59e-38	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0175878_4	1408428.JNJP01000030_gene973	134.0	5.1e-38	VRR_NUC	N/A
Pfam	UHGV-0175878_4	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0175878_6	phrog_323	44.3	0.0000000000028	endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0175878_6	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
dbAPIS	UHGV-0175878_6	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
PHROG	UHGV-0175878_7	phrog_474	120.2	2.6e-35	phosphofructokinase	other
UniRef90	UHGV-0175878_7	UniRef90_A0A7X6GRJ7	105.0	2.94e-27	N/A	N/A
eggNOG-mapper	UHGV-0175878_7	1123247.AUIJ01000002_gene2234	100.0	5.83e-26	N/A	N/A
Pfam	UHGV-0175878_7	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0175878_7	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-0175878_9	K06223	188.0	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0175878_9	phrog_56	140.5	1.49995e-41	DNA methyltransferase	other
UniRef90	UHGV-0175878_9	UniRef90_UPI0018A89FCC	204.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0175878_9	1441930.Z042_22915	192.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0175878_9	MTase_II_00030	152.0	5.60519e-45	Type II methyltransferase	RM
Pfam	UHGV-0175878_9	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0175878_9	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0175878_9	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175878_12	UniRef90_A0A1I3RMH7	74.3	1.41e-16	Anaerobic ribonucleoside-triphosphate reductase	N/A
eggNOG-mapper	UHGV-0175878_12	762983.HMPREF9444_00728	74.7	2.25e-17	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0175878_12	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0175878_12	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
PHROG	UHGV-0175878_13	phrog_24780	48.5	0.000000000000044	N/A	unknown function
UniRef90	UHGV-0175878_13	UniRef90_G1UQN0	121.0	1.21e-30	Pesticin domain-containing protein	N/A
eggNOG-mapper	UHGV-0175878_13	665942.HMPREF1022_00903	121.0	2.02e-31	Bacterial toxin homologue of phage lysozyme, C-term	N/A
Pfam	UHGV-0175878_13	PF16754	N/A	N/A	Bacterial toxin homologue of phage lysozyme, C-term	Pesticin
COG	UHGV-0175878_13	COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175878_13	PF16754,MF_04136,COG3772	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175878_14	UniRef90_UPI001956181E	125.0	3.77e-31	right-handed parallel beta-helix repeat-containing protein	N/A
eggNOG-mapper	UHGV-0175878_14	525146.Ddes_0259	141.0	4.15e-38	N/A	N/A
structural_annotation	UHGV-0175878_14	PF00544,COG3866	N/A	N/A	N/A	N/A
PHROG	UHGV-0175878_15	phrog_1544	86.4	3.3e-25	N/A	unknown function
UniRef90	UHGV-0175878_15	UniRef90_A0A388SKI6	133.0	2.4e-36	N/A	N/A
eggNOG-mapper	UHGV-0175878_15	207559.Dde_2569	138.0	9.61e-39	Glycosyl hydrolase 108	N/A
COG	UHGV-0175878_15	COG3926	N/A	N/A	Lysozyme family protein	N/A
PHROG	UHGV-0175878_17	phrog_12540	44.2	0.0000000000029	N/A	unknown function
UniRef90	UHGV-0175878_17	UniRef90_A0A5Q2W839	80.5	1.04e-16	Putative DNA binding domain	N/A
KOfam	UHGV-0175878_18	K06909	293.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0175878_18	phrog_3717	226.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0175878_18	UniRef90_A0A6B3UE32	401.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0175878_18	1217652.F954_02867	352.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0175878_18	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0175878_18	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0175878_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0175878_18	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0175878_19	phrog_1216	341.7	0	portal protein	head and packaging
UniRef90	UHGV-0175878_19	UniRef90_A0A516LL11	269.0	0	Putative portal protein	N/A
eggNOG-mapper	UHGV-0175878_19	1380394.JADL01000008_gene3768	275.0	0	Membrane	N/A
COG	UHGV-0175878_19	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0175878_19	PF12236,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0175878_21	phrog_3927	74.3	2.5e-21	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0175878_21	398578.Daci_1945	66.6	0.00000000147	N/A	N/A
PHROG	UHGV-0175878_22	phrog_1328	264.5	0	major head protein	head and packaging
UniRef90	UHGV-0175878_22	UniRef90_UPI00097D27EC	443.0	0	N/A	N/A
eggNOG-mapper	UHGV-0175878_22	1380394.JADL01000008_gene3764	201.0	0	N/A	N/A
Pfam	UHGV-0175878_22	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0175878_22	PF17236,MF_04119,NF033394,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0175878_24	phrog_2941	129.4	2.1e-38	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0175878_24	579138.Zymop_0816	83.2	9.36e-17	N/A	N/A
structural_annotation	UHGV-0175878_24	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0175878_25	phrog_240	81.7	9.4e-24	head protein	head and packaging
UniRef90	UHGV-0175878_25	UniRef90_A0A401JF42	90.1	2.65e-20	N/A	N/A
eggNOG-mapper	UHGV-0175878_25	1430331.EP10_10445	99.4	3.67e-25	Belongs to the glycosyl hydrolase 8 (cellulase D) family	N/A
COG	UHGV-0175878_25	COG3405	N/A	N/A	Endo-1,4-beta-D-glucanase Y	N/A
PHROG	UHGV-0175878_27	phrog_3287	144.0	9.69699e-43	virion structural protein	head and packaging
UniRef90	UHGV-0175878_27	UniRef90_A0A7S5Y917	158.0	2.22e-39	Stabilization protein	N/A
eggNOG-mapper	UHGV-0175878_27	1380394.JADL01000008_gene3759	229.0	0	N/A	N/A
structural_annotation	UHGV-0175878_27	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175878_28	PF15868,NF012201	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175878_31	1121441.AUCX01000001_gene2680	53.1	0.00000375	N/A	N/A
structural_annotation	UHGV-0175878_31	PF11039,MF_02210,NF011709,COG1670	N/A	N/A	N/A	N/A
PHROG	UHGV-0175878_32	phrog_4287	50.4	0.000000000000023	DNA ejection protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0175878_32	1380394.JADL01000008_gene3756	98.6	1.98e-21	N/A	N/A
PHROG	UHGV-0175878_33	phrog_873	66.8	1.7e-19	endolysin	head and packaging
eggNOG-mapper	UHGV-0175878_33	1296990.H845_1846	65.1	0.00000000153	N/A	N/A
eggNOG-mapper	UHGV-0175878_34	420324.KI911964_gene387	83.2	0.000000000000227	N/A	N/A
PHROG	UHGV-0175878_35	phrog_5795	86.7	2.2e-25	tail protein	tail
UniRef90	UHGV-0175878_35	UniRef90_C3X7Y2	94.4	2e-20	Phage Tail Collar Domain protein	N/A
eggNOG-mapper	UHGV-0175878_35	1009370.ALO_01669	100.0	3.5e-23	tail collar domain protein	N/A
COG	UHGV-0175878_35	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0175878_35	PF07484,COG4675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175878_36	1347368.HG964410_gene7506	53.1	0.00000456	Chromatin associated protein KTI12	N/A
Pfam	UHGV-0175878_36	PF13671	N/A	N/A	AAA domain	AAA_33
COG	UHGV-0175878_36	COG2844	N/A	N/A	UTP:GlnB (protein PII) uridylyltransferase	N/A
PHROG	UHGV-0175878_37	phrog_4912	79.8	4.5e-23	tail fiber assembly	tail
UniRef90	UHGV-0175878_37	UniRef90_UPI001C39751F	102.0	2.89e-24	Phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0175878_37	411464.DESPIG_01098	108.0	7.81e-28	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-0175878_37	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0175878_37	PF16778	N/A	N/A	N/A	N/A
PHROG	UHGV-0175878_38	phrog_523	46.7	0.00000000000053	tail collar fiber protein	tail
UniRef90	UHGV-0175878_38	UniRef90_A0A3A9HSP0	129.0	2.93e-34	Tail fiber protein	N/A
eggNOG-mapper	UHGV-0175878_38	556268.OFAG_01044	112.0	3.47e-27	Phage Tail Collar Domain	N/A
Pfam	UHGV-0175878_38	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-0175878_38	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0175878_38	PF07484,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0175878_39	phrog_105	54.0	0.0000000000000024	tail fiber assembly	tail
eggNOG-mapper	UHGV-0175878_39	690850.Desaf_3554	87.4	3.07e-19	Phage tail assembly chaperone protein	N/A
NCBIFam	UHGV-0175878_40	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0175878_40	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-0175878_44	K14059	135.4	6.6e-40	int; integrase	N/A
PHROG	UHGV-0175878_44	phrog_1	138.5	6.09999e-41	integrase	integration and excision
UniRef90	UHGV-0175878_44	UniRef90_UPI000496F64A	237.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0175878_44	1121468.AUBR01000016_gene2323	63.5	0.0000000155	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0175878_44	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0175878_44	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0175878_44	PF00589,PF13495,PF02920,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175878_47	665942.HMPREF1022_02275	57.0	0.0000000078	cytolysis by virus of host cell	N/A
COG	UHGV-0175878_47	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
KOfam	UHGV-0175878_48	K03554	53.7	0.0000000000000018	rdgC; recombination associated protein RdgC	N/A
UniRef90	UHGV-0175878_48	UniRef90_A0A1Y4DA61	241.0	0	Recombination-associated protein RdgC	N/A
eggNOG-mapper	UHGV-0175878_48	457398.HMPREF0326_01443	243.0	0	Putative exonuclease, RdgC	N/A
COG	UHGV-0175878_48	COG2974	N/A	N/A	DNA recombination-dependent growth factor RdgC	N/A
structural_annotation	UHGV-0175878_48	PF04381,MF_00194,NF001465,COG2974	N/A	N/A	N/A	N/A
PHROG	UHGV-0175878_51	phrog_561	159.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175878_51	UniRef90_UPI001D032ADE	185.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0175878_51	563192.HMPREF0179_00147	194.0	0	N/A	N/A
KOfam	UHGV-0175878_52	K07465	66.5	4.4e-19	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-0175878_52	phrog_69	77.5	2.3e-22	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175878_52	UniRef90_A0A807ZPP9	318.0	0	Nuclease	N/A
eggNOG-mapper	UHGV-0175878_52	411464.DESPIG_01319	318.0	0	PD-(D/E)XK nuclease superfamily	N/A
Pfam	UHGV-0175878_52	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
COG	UHGV-0175878_52	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0175878_52	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
KOfam	UHGV-0175878_58	K01356	81.5	1.5e-23	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0175878_58	phrog_4	111.8	8.6e-33	transcriptional repressor	transcription regulation
UniRef90	UHGV-0175878_58	UniRef90_A0A7W8FHJ1	256.0	0	Phage repressor protein C with HTH and peptisase S24 domain	N/A
eggNOG-mapper	UHGV-0175878_58	457398.HMPREF0326_03030	196.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0175878_58	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0175878_58	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0175878_58	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
PHROG	UHGV-0175878_61	phrog_3729	55.9	6.2e-16	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175878_61	UniRef90_A0A7Z2GR16	92.8	8.61e-20	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0175878_61	398578.Daci_4111	77.0	0.0000000000000202	N/A	N/A