UHGV-0176151 (vOTU-170114)

Viral Genome: UHGV-0176151

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0176151
vOTU ID	vOTU-170114
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_575747
Associated BioSample	SAMN07449059
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.63 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9762
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.1
Jumbo phage	No

Genome content
Genome length (bp)	40,236
GC content	51.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	71
CDS density	89%
Average CDS length (bps)	506.75
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0176151_2	UniRef90_K1U9S5	97.1	2.26e-25	Protein containing Helix-turn-helix type 3 domain protein	N/A
Pfam	UHGV-0176151_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176151_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0176151_2	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0176151_4	K22299	43.7	0.0000000000058	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0176151_4	phrog_8	40.3	0.00000000007	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176151_4	UniRef90_A0A550KLW9	48.1	0.00000668	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176151_4	1234364.AMSF01000095_gene2593	48.1	0.00000141	Helix-turn-helix domain	N/A
Pfam	UHGV-0176151_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176151_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0176151_4	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0176151_5	K22299	49.2	0.00000000000011	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0176151_5	phrog_8	45.7	0.0000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176151_5	UniRef90_K1UYS1	89.4	4.6e-21	Protein containing Helix-turn-helix type 3 domain protein	N/A
eggNOG-mapper	UHGV-0176151_5	411470.RUMGNA_03101	62.4	0.0000000000325	transcriptional regulator, XRE family	N/A
PADLOC	UHGV-0176151_5	retron_type_VI_hth_cluster2_1	40.8	0.000000000065	N/A	Retron
Pfam	UHGV-0176151_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176151_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0176151_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176151_7	UniRef90_K1U8T0	117.0	3.59e-33	Arc domain-containing protein	N/A
eggNOG-mapper	UHGV-0176151_7	742733.HMPREF9469_03082	69.7	0.0000000000000024	Arc-like DNA binding domain	N/A
Pfam	UHGV-0176151_7	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
structural_annotation	UHGV-0176151_7	PF03869,NF008671,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-0176151_10	K07729	47.7	0.00000000000031	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0176151_10	phrog_3	43.8	0.0000000000098	transcriptional repressor	transcription regulation
UniRef90	UHGV-0176151_10	UniRef90_A0A1I4ILN0	58.2	0.000000000663	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0176151_10	429009.Adeg_0118	49.7	0.000000392	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0176151_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176151_10	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0176151_10	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0176151_11	K22300	47.7	0.00000000000034	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0176151_11	phrog_8	66.5	5.9e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176151_11	UniRef90_A0A498CMK9	76.6	1.01e-16	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176151_11	1226322.HMPREF1545_03665	71.2	0.00000000000000217	K01356 repressor LexA	N/A
Pfam	UHGV-0176151_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176151_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0176151_11	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_12	phrog_3	44.1	0.0000000000076	transcriptional repressor	transcription regulation
Pfam	UHGV-0176151_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176151_12	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0176151_12	PF03374,PF01381,MF_00535,NF041951,COG1476,COG3645	N/A	N/A	N/A	N/A
KOfam	UHGV-0176151_13	K22299	53.4	0.0000000000000051	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0176151_13	phrog_8	70.7	2.6e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176151_13	UniRef90_K1TK02	225.0	0	Protein containing Helix-turn-helix type 3 domain protein	N/A
eggNOG-mapper	UHGV-0176151_13	562743.JH976441_gene411	71.2	0.0000000000000552	transcriptional	N/A
Pfam	UHGV-0176151_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176151_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0176151_16	K14059	223.3	0	int; integrase	N/A
PHROG	UHGV-0176151_16	phrog_1	189.2	0	integrase	integration and excision
UniRef90	UHGV-0176151_16	UniRef90_A0A1Q6PWD2	222.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0176151_16	1203606.HMPREF1526_00215	125.0	8.92e-30	Phage integrase family	N/A
Pfam	UHGV-0176151_16	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0176151_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0176151_16	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0176151_16	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_18	phrog_28802	45.1	0.00000000000078	N/A	unknown function
structural_annotation	UHGV-0176151_18	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_19	phrog_20016	182.6	0	N/A	unknown function
UniRef90	UHGV-0176151_19	UniRef90_A0A345BPX4	150.0	4.06377e-44	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0176151_19	1226322.HMPREF1545_00077	156.0	0	N/A	N/A
structural_annotation	UHGV-0176151_19	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_20	phrog_16490	157.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0176151_20	1408437.JNJN01000043_gene803	129.0	7.7e-34	N/A	N/A
PHROG	UHGV-0176151_21	phrog_22984	70.9	1e-20	N/A	unknown function
PHROG	UHGV-0176151_22	phrog_21718	121.5	5.6e-36	N/A	unknown function
eggNOG-mapper	UHGV-0176151_22	397290.C810_05210	102.0	2.4e-25	N/A	N/A
PHROG	UHGV-0176151_23	phrog_3754	89.2	4.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0176151_23	476272.RUMHYD_01764	152.0	0	N/A	N/A
eggNOG-mapper	UHGV-0176151_27	397291.C804_03513	89.4	3e-19	N/A	N/A
PHROG	UHGV-0176151_30	phrog_18666	47.9	0.000000000000029	N/A	unknown function
AcrCatalog	UHGV-0176151_30	cluster_11486	55.8	0.00000000000143	NA	N/A
eggNOG-mapper	UHGV-0176151_31	1235798.C817_04601	70.5	0.00000000000591	N/A	N/A
eggNOG-mapper	UHGV-0176151_32	1121115.AXVN01000020_gene103	62.8	0.0000000000328	N/A	N/A
UniRef90	UHGV-0176151_33	UniRef90_A0A1H4G788	57.4	0.000000268	XPA protein C-terminus	N/A
eggNOG-mapper	UHGV-0176151_33	877415.JNJQ01000015_gene473	85.9	5.31e-19	N/A	N/A
structural_annotation	UHGV-0176151_34	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176151_35	411470.RUMGNA_00254	80.5	6.72e-19	N/A	N/A
UniRef90	UHGV-0176151_37	UniRef90_K1TIU6	455.0	0	Protein containing SH3, type 3 domain protein	N/A
Pfam	UHGV-0176151_37	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0176151_37	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0176151_37	PF18342,PF05382,NF040670,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176151_39	UniRef90_UPI0018835F0C	154.0	3.36e-39	collagen-like protein	N/A
eggNOG-mapper	UHGV-0176151_39	476272.RUMHYD_00002	103.0	1.56e-21	N/A	N/A
structural_annotation	UHGV-0176151_41	PF10651,PF07703,MF_04116,NF032891,COG4326	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_42	phrog_4311	122.9	1.5e-36	minor head protein	head and packaging
UniRef90	UHGV-0176151_42	UniRef90_K1UCK4	606.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0176151_42	580331.Thit_1375	77.8	0.00000000000187	TIGRFAM phage minor structural protein	N/A
Pfam	UHGV-0176151_42	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0176151_42	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0176151_42	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0176151_43	PF20753,PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_44	phrog_1535	119.9	1.9e-35	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0176151_44	1235800.C819_00476	255.0	0	tape measure	N/A
COG	UHGV-0176151_44	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0176151_47	phrog_885	125.1	4.9e-37	major tail protein	tail
eggNOG-mapper	UHGV-0176151_47	411465.PEPMIC_00741	123.0	1.13e-32	N/A	N/A
structural_annotation	UHGV-0176151_47	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176151_48	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_49	phrog_17977	69.6	3.5e-20	N/A	unknown function
UniRef90	UHGV-0176151_49	UniRef90_A0A285PT57	77.8	3.04e-16	Phage head-tail joining protein	N/A
Pfam	UHGV-0176151_49	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0176151_49	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_51	phrog_29	147.8	7.00649e-44	major head protein	head and packaging
UniRef90	UHGV-0176151_51	UniRef90_K1TJK6	778.0	0	Phage protein (Fragment)	N/A
eggNOG-mapper	UHGV-0176151_51	1232443.BAIA02000078_gene29	247.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0176151_51	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
Pfam	UHGV-0176151_51	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0176151_51	PF03864,PF18316,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_52	phrog_909	82.0	5.2e-24	major head protein	head and packaging
UniRef90	UHGV-0176151_52	UniRef90_K1TUL5	227.0	0	N/A	N/A
eggNOG-mapper	UHGV-0176151_52	1536772.R70723_06665	80.5	4.46e-18	N/A	N/A
structural_annotation	UHGV-0176151_52	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_53	phrog_194	66.7	4.3e-19	head scaffolding protein	head and packaging
Pfam	UHGV-0176151_53	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0176151_53	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_54	phrog_5	59.3	9.9e-17	tail completion or Neck1 protein	connector
Pfam	UHGV-0176151_54	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0176151_54	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_55	phrog_859	68.6	6.6e-20	portal protein	head and packaging
UniRef90	UHGV-0176151_55	UniRef90_K1T614	582.0	0	Minor head protein	N/A
Pfam	UHGV-0176151_55	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0176151_55	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176151_55	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_57	phrog_64	137.8	4.39994e-41	portal protein	head and packaging
UniRef90	UHGV-0176151_57	UniRef90_K1SG85	920.0	0	Phage portal protein, SPP1	N/A
eggNOG-mapper	UHGV-0176151_57	673376.F2VHW1_9CAUD	256.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0176151_57	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0176151_57	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_58	phrog_38	170.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0176151_58	UniRef90_K1TUM3	441.0	0	Terminase large subunit (Fragment)	N/A
eggNOG-mapper	UHGV-0176151_58	673839.D2J053_9CAUD	421.0	0	N/A	N/A
structural_annotation	UHGV-0176151_58	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_60	phrog_3193	72.2	2.3e-21	N/A	unknown function
UniRef90	UHGV-0176151_60	UniRef90_A0A2I0N2L6	121.0	8.29e-32	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0176151_60	1140002.I570_04513	90.1	2.68e-21	ASCH domain	N/A
Pfam	UHGV-0176151_60	PF04266	N/A	N/A	ASCH domain	ASCH
structural_annotation	UHGV-0176151_60	PF07370,MF_00684,NF003443,COG4293	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_61	phrog_9353	197.7	0	N/A	unknown function
UniRef90	UHGV-0176151_61	UniRef90_A0A4P5P3Z7	217.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0176151_61	1231336.L248_2139	211.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0176151_61	MTase_II_00015	47.8	0.00000000000029	Type II methyltransferase	RM
Pfam	UHGV-0176151_61	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0176151_61	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0176151_61	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0176151_62	K00390	42.7	0.0000000000037	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0176151_62	phrog_424	49.0	0.000000000000027	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0176151_62	UniRef90_A0A7L5UGI0	248.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0176151_62	557436.Lreu_0829	241.0	0	sulfate reduction	N/A
Pfam	UHGV-0176151_62	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0176151_62	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0176151_62	PF01507,MF_00345,NF006351,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_64	phrog_21498	272.2	0	N/A	unknown function
UniRef90	UHGV-0176151_64	UniRef90_UPI0016246E09	214.0	0	chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0176151_64	1095750.HMPREF9970_2290	213.0	0	chromosome segregation	N/A
COG	UHGV-0176151_64	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0176151_64	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_65	phrog_25027	70.7	1.6e-20	N/A	unknown function
UniRef90	UHGV-0176151_65	UniRef90_K1SIJ4	169.0	0	ArdcN domain-containing protein	N/A
eggNOG-mapper	UHGV-0176151_65	1399942.U3PBI8_9CAUD	72.8	0.0000000000000024	N/A	N/A
Pfam	UHGV-0176151_65	PF08401	N/A	N/A	N-terminal domain of anti-restriction factor ArdC	ArdcN
structural_annotation	UHGV-0176151_67	PF01402,NF008671,COG4226	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_69	phrog_36	41.0	0.000000000029	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0176151_69	903814.ELI_1292	53.9	0.000000245	N/A	N/A
structural_annotation	UHGV-0176151_69	PF04545,MF_00674,NF001072,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0176151_71	phrog_824	128.6	2.4e-38	N/A	unknown function
UniRef90	UHGV-0176151_71	UniRef90_K1REM0	187.0	0	VRR-NUC domain protein	N/A
eggNOG-mapper	UHGV-0176151_71	1408428.JNJP01000030_gene973	104.0	3.58e-26	VRR_NUC	N/A
Pfam	UHGV-0176151_71	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC