UHGV-0176354 (vOTU-101380)

Viral Genome: UHGV-0176354

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0176354
vOTU ID	vOTU-101380
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_590717
Associated BioSample	SAMN09781782
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.41 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.5
Jumbo phage	No

Genome content
Genome length (bp)	32,134
GC content	58.97%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	94%
Average CDS length (bps)	518.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0176354_3	phrog_190	100.8	1.4e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176354_3	UniRef90_A0A845R8D4	124.0	1.5e-33	N/A	N/A
eggNOG-mapper	UHGV-0176354_3	1226322.HMPREF1545_00295	115.0	1.15e-30	N/A	N/A
Pfam	UHGV-0176354_3	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0176354_3	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_6	phrog_3136	133.8	6.4e-40	N/A	unknown function
UniRef90	UHGV-0176354_6	UniRef90_A0A3D0HBD2	117.0	1.99e-30	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0176354_6	331869.BAL199_13048	54.3	0.00000106	sequence-specific DNA binding	N/A
Pfam	UHGV-0176354_6	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0176354_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0176354_6	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0176354_8	K00390	97.2	1.8e-28	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0176354_8	phrog_424	123.8	1.2e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0176354_8	UniRef90_UPI001D087498	412.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0176354_8	1408437.JNJN01000032_gene2312	323.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-0176354_8	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0176354_8	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0176354_8	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176354_11	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176354_12	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176354_14	PF10548	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176354_15	642492.Clole_0961	68.6	0.0000000000000216	N/A	N/A
structural_annotation	UHGV-0176354_15	PF12286	N/A	N/A	N/A	N/A
KOfam	UHGV-0176354_19	K18830	55.7	0.0000000000000012	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0176354_19	phrog_8	54.6	0.0000000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176354_19	UniRef90_A0A2U1BEG8	124.0	2.86e-34	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0176354_19	445972.ANACOL_03315	110.0	1.14e-29	N/A	N/A
PADLOC	UHGV-0176354_19	retron_type_VI_hth_cluster2_1	40.9	0.000000000042	N/A	Retron
Pfam	UHGV-0176354_19	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0176354_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0176354_19	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176354_21	552398.HMPREF0866_02158	53.5	0.00000466	NOG18738 non supervised orthologous group	N/A
COG	UHGV-0176354_21	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-0176354_21	PF02805	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_22	phrog_10292	74.9	3.4e-22	N/A	unknown function
UniRef90	UHGV-0176354_22	UniRef90_UPI00101CA94E	99.0	6.47e-24	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0176354_22	1198452.Jab_1c20720	82.4	2.94e-18	TM2 domain	N/A
Pfam	UHGV-0176354_22	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0176354_22	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0176354_22	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0176354_23	K22299	48.5	0.00000000000019	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
Pfam	UHGV-0176354_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176354_23	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0176354_23	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0176354_24	K06400	251.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0176354_24	phrog_95	264.3	0	integrase	integration and excision
UniRef90	UHGV-0176354_24	UniRef90_G9YSD9	416.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0176354_24	1408437.JNJN01000002_gene1420	407.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0176354_24	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0176354_24	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0176354_24	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0176354_24	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0176354_24	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176354_25	UniRef90_A0A8F0WD75	79.3	0.00000000000000201	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0176354_25	1378168.N510_03079	70.5	0.00000000000206	N/A	N/A
eggNOG-mapper	UHGV-0176354_29	1160721.RBI_I00206	52.4	0.0000000279	N/A	N/A
structural_annotation	UHGV-0176354_29	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_31	phrog_14030	137.0	1.2e-40	N/A	unknown function
UniRef90	UHGV-0176354_31	UniRef90_R6LL81	235.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0176354_31	1410624.JNKK01000008_gene1745	110.0	2.04e-25	repeat protein	N/A
COG	UHGV-0176354_31	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
PHROG	UHGV-0176354_32	phrog_6918	95.2	4.3e-28	holin	lysis
UniRef90	UHGV-0176354_32	UniRef90_A0A316QCY7	102.0	3.48e-26	Holin	N/A
eggNOG-mapper	UHGV-0176354_32	1297617.JPJD01000020_gene301	100.0	2.43e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0176354_32	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0176354_32	PF09682,TIGR01673	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176354_36	1519439.JPJG01000060_gene1895	61.2	0.00000000314	N/A	N/A
structural_annotation	UHGV-0176354_36	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_38	phrog_10993	50.3	0.000000000000025	Hoc-like head decoration	head and packaging
eggNOG-mapper	UHGV-0176354_38	742738.HMPREF9460_02534	66.2	0.00000000127	N/A	N/A
Pfam	UHGV-0176354_38	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0176354_38	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176354_39	1519439.JPJG01000060_gene1892	54.7	0.000000257	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0176354_39	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0176354_40	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_41	phrog_10898	292.3	0	N/A	unknown function
UniRef90	UHGV-0176354_41	UniRef90_A0A7U3NJT3	189.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0176354_41	717606.PaecuDRAFT_2136	71.6	0.0000000000136	S-layer homology domain	N/A
COG	UHGV-0176354_41	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-0176354_41	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176354_43	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176354_44	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_45	phrog_26795	128.5	1.1e-38	N/A	unknown function
UniRef90	UHGV-0176354_45	UniRef90_A0A5J6T4K8	132.0	2.15e-31	Minor tail protein	N/A
eggNOG-mapper	UHGV-0176354_45	1382315.JPOI01000001_gene271	133.0	4.59e-33	N/A	N/A
structural_annotation	UHGV-0176354_45	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_46	phrog_37549	81.0	1.7e-26	virion structural protein	head and packaging
UniRef90	UHGV-0176354_46	UniRef90_A0A3D0W045	225.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0176354_46	1195236.CTER_5103	129.0	1.34e-28	N/A	N/A
structural_annotation	UHGV-0176354_46	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_47	phrog_8462	125.8	5e-37	tail length tape measure protein	tail
UniRef90	UHGV-0176354_47	UniRef90_A0A1M6L1P7	255.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0176354_47	1195236.CTER_5104	248.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0176354_47	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0176354_47	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176354_49	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_50	phrog_88	79.5	4.5e-23	major tail protein	tail
UniRef90	UHGV-0176354_50	UniRef90_S0FUN2	112.0	5.28e-28	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0176354_50	1195236.CTER_5106	112.0	8.85e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0176354_50	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0176354_50	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176354_50	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_51	phrog_5	46.1	0.000000000001	tail completion or Neck1 protein	connector
structural_annotation	UHGV-0176354_51	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176354_52	1487921.DP68_11350	57.4	0.00000000313	N/A	N/A
structural_annotation	UHGV-0176354_52	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_53	phrog_1951	74.8	8.2e-22	head-tail adaptor	connector
UniRef90	UHGV-0176354_53	UniRef90_A0A1F8UNT5	65.1	0.0000000000123	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0176354_53	1094508.Tsac_2422	52.4	0.000000225	Phage head-tail joining protein	N/A
Pfam	UHGV-0176354_53	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0176354_53	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0176354_53	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0176354_53	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_54	phrog_5223	43.7	0.0000000000038	neck protein	connector
UniRef90	UHGV-0176354_54	UniRef90_E6MGY0	58.5	0.00000000355	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0176354_54	887929.HMP0721_1264	58.5	0.000000000596	N/A	N/A
PHROG	UHGV-0176354_55	phrog_10	194.8	0	major head protein	head and packaging
UniRef90	UHGV-0176354_55	UniRef90_UPI00189AE5FE	409.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0176354_55	1280689.AUJC01000011_gene1521	387.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0176354_55	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0176354_55	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0176354_55	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0176354_55	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0176354_56	K01358	129.3	4.6e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0176354_56	phrog_94	199.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0176354_56	UniRef90_UPI0018979DC8	205.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0176354_56	1280689.AUJC01000011_gene1520	186.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0176354_56	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0176354_56	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0176354_56	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_57	phrog_12	177.5	0	portal protein	head and packaging
UniRef90	UHGV-0176354_57	UniRef90_UPI001898FCCE	500.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0176354_57	1203606.HMPREF1526_00980	500.0	0	Portal protein	N/A
Pfam	UHGV-0176354_57	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0176354_57	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0176354_57	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0176354_58	phrog_9	373.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0176354_58	UniRef90_A0A1Y3W5R1	782.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0176354_58	1203606.HMPREF1526_00981	730.0	0	Terminase	N/A
Pfam	UHGV-0176354_58	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0176354_58	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0176354_58	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0176354_58	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A