UHGV-0176499 (vOTU-028900)

Viral Genome: UHGV-0176499

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0176499
vOTU ID	vOTU-028900
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_586177
Associated BioSample	SAMN09781741
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.91 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.6
Jumbo phage	No

Genome content
Genome length (bp)	42,464
GC content	44.77%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	94%
Average CDS length (bps)	930.07
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0176499_3	1392502.JNIO01000008_gene1280	231.0	0	N/A	N/A
structural_annotation	UHGV-0176499_3	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-0176499_4	phrog_918	99.8	1.3e-29	N/A	unknown function
UniRef90	UHGV-0176499_4	UniRef90_UPI000EC62F11	151.0	0	N/A	N/A
eggNOG-mapper	UHGV-0176499_4	537007.BLAHAN_05515	138.0	1.27995e-41	N/A	N/A
Pfam	UHGV-0176499_4	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0176499_4	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0176499_7	phrog_10089	1691.5	0	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0176499_7	UniRef90_UPI001891FB73	786.0	0	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0176499_7	278957.ABEA03000004_gene4552	1112.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0176499_7	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
Pfam	UHGV-0176499_7	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0176499_7	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
Pfam	UHGV-0176499_7	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
Pfam	UHGV-0176499_7	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0176499_7	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
UniRef90	UHGV-0176499_9	UniRef90_A0A1G6NNF8	157.0	2.24068e-42	Intein N-terminal splicing region	N/A
eggNOG-mapper	UHGV-0176499_9	1232428.CAVO010000067_gene416	164.0	0	N/A	N/A
structural_annotation	UHGV-0176499_10	PF00765,MF_02210,NF007644,COG2153	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176499_11	883156.HMPREF9282_00569	222.0	0	N/A	N/A
structural_annotation	UHGV-0176499_11	PF11134,MF_03008,NF010237,TIGR04362,COG4257	N/A	N/A	N/A	N/A
PHROG	UHGV-0176499_12	phrog_2837	60.5	3.4e-17	tail protein	tail
UniRef90	UHGV-0176499_12	UniRef90_A0A1Q6R2G9	224.0	0	N/A	N/A
eggNOG-mapper	UHGV-0176499_12	1286631.X805_38770	57.8	0.0000000667	N/A	N/A
Pfam	UHGV-0176499_12	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0176499_12	PF14301	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176499_13	PF16116	N/A	N/A	N/A	N/A
KOfam	UHGV-0176499_14	K19719	88.9	1.2e-26	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0176499_14	phrog_6320	64.0	5e-23	tail fiber protein	tail
Pfam	UHGV-0176499_14	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0176499_14	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0176499_14	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0176499_16	phrog_2427	43.7	0.0000000000029	N/A	unknown function
PHROG	UHGV-0176499_17	phrog_32822	56.8	1.7e-16	virion structural protein	head and packaging
UniRef90	UHGV-0176499_17	UniRef90_A0A1G6NQU3	310.0	0	Flagellin FlgL	N/A
eggNOG-mapper	UHGV-0176499_17	1401067.HMPREF0872_03800	132.0	1.23e-28	cellulase activity	N/A
COG	UHGV-0176499_17	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0176499_18	phrog_399	48.1	0.000000000000093	structural protein	head and packaging
Pfam	UHGV-0176499_18	PF20387	N/A	N/A	N/A	DUF6682
structural_annotation	UHGV-0176499_18	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0176499_19	phrog_334	301.0	0	major head protein	head and packaging
UniRef90	UHGV-0176499_19	UniRef90_A0A316SB53	441.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0176499_19	401526.TcarDRAFT_1286	315.0	0	N/A	N/A
Pfam	UHGV-0176499_19	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0176499_19	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0176499_19	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0176499_22	phrog_156	422.1	0	portal protein	head and packaging
UniRef90	UHGV-0176499_22	UniRef90_F7NK66	505.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-0176499_22	401526.TcarDRAFT_1284	534.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-0176499_22	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0176499_22	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
Pfam	UHGV-0176499_23	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0176499_23	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
KOfam	UHGV-0176499_24	K06909	258.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0176499_24	phrog_3717	228.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0176499_24	UniRef90_A0A316S7L1	752.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0176499_24	1009370.ALO_12436	585.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-0176499_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0176499_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0176499_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0176499_24	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0176499_25	K07474	83.6	5.5e-24	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0176499_25	phrog_51	86.6	3e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0176499_25	UniRef90_A0A1I0K7H5	101.0	1.3e-24	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0176499_25	1391647.AVSV01000003_gene1801	94.4	1.42e-22	Terminase small subunit	N/A
Pfam	UHGV-0176499_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0176499_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0176499_25	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176499_26	1280689.AUJC01000003_gene960	49.7	0.00000221	N/A	N/A
UniRef90	UHGV-0176499_29	UniRef90_R6DRH1	94.4	7.17e-22	Putative TnpX site-specific recombinase	N/A
eggNOG-mapper	UHGV-0176499_29	742738.HMPREF9460_00886	113.0	2.52e-30	N/A	N/A
PHROG	UHGV-0176499_30	phrog_2329	72.5	3.5e-21	N/A	unknown function
UniRef90	UHGV-0176499_30	UniRef90_UPI001A21AB60	65.5	0.000000000000792	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0176499_30	1120746.CCNL01000005_gene152	65.9	0.00000000000139	N/A	N/A
Pfam	UHGV-0176499_30	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
structural_annotation	UHGV-0176499_30	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176499_32	401526.TcarDRAFT_1279	76.3	0.00000000000000171	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0176499_32	PF05263,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0176499_33	phrog_190	137.3	9.60002e-41	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176499_33	UniRef90_A0A7C9LJY9	119.0	7.74e-33	N/A	N/A
eggNOG-mapper	UHGV-0176499_33	525255.HMPREF0077_0413	111.0	2.95e-30	N/A	N/A
Pfam	UHGV-0176499_33	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0176499_33	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0176499_34	K03111	132.4	5.5e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0176499_34	phrog_44	143.0	1.80067e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176499_34	UniRef90_R6WK64	174.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0176499_34	1262915.BN574_00939	164.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0176499_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0176499_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0176499_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0176499_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0176499_34	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0176499_38	phrog_3878	61.4	1.4e-17	N/A	unknown function
structural_annotation	UHGV-0176499_38	PF19607	N/A	N/A	N/A	N/A
PHROG	UHGV-0176499_39	phrog_954	184.5	0	DNA methyltransferase	other
UniRef90	UHGV-0176499_39	UniRef90_A0A226QS88	174.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0176499_39	457405.FSDG_01549	161.0	0	methyltransferase	N/A
PADLOC	UHGV-0176499_39	MTase_II_00074	156.0	0	Type II methyltransferase	RM
COG	UHGV-0176499_39	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0176499_39	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0176499_43	phrog_3878	43.0	0.0000000000073	N/A	unknown function