UHGV-0176506 (vOTU-079915)

Viral Genome: UHGV-0176506

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0176506
vOTU ID	vOTU-079915
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_586171
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.06 (High-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9757
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.08
Jumbo phage	No

Genome content
Genome length (bp)	51,172
GC content	51.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	77
CDS density	96%
Average CDS length (bps)	635.18
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0176506_1	phrog_10469	106.3	3.5e-31	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0176506_1	397288.C806_03002	118.0	3.21e-31	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
COG	UHGV-0176506_1	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0176506_2	phrog_9804	103.4	2.4e-30	N/A	unknown function
UniRef90	UHGV-0176506_2	UniRef90_UPI00189C0C42	99.8	9.45e-23	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0176506_2	1121344.JHZO01000003_gene981	105.0	6.31e-26	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0176506_2	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0176506_2	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0176506_3	K00390	59.5	1.2e-17	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0176506_3	phrog_424	137.5	8.90007e-41	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0176506_3	UniRef90_A0A3D4KZM8	354.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0176506_3	665956.HMPREF1032_00140	290.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0176506_3	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0176506_3	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0176506_3	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0176506_4	K05925	107.9	1.2e-31	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-0176506_4	phrog_359	262.5	0	DNA methyltransferase	other
UniRef90	UHGV-0176506_4	UniRef90_A0A1Q6KPW4	282.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0176506_4	742740.HMPREF9474_03058	268.0	0	Belongs to the MT-A70-like family	N/A
PADLOC	UHGV-0176506_4	MTase_II_00048	247.4	0	Type II methyltransferase	RM
Pfam	UHGV-0176506_4	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-0176506_4	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-0176506_4	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
PHROG	UHGV-0176506_5	phrog_190	108.9	4.6e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176506_5	UniRef90_A0A4P8JTL4	128.0	3.38e-36	N/A	N/A
eggNOG-mapper	UHGV-0176506_5	742767.HMPREF9456_03412	92.4	6.45e-23	N/A	N/A
Pfam	UHGV-0176506_5	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0176506_5	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0176506_6	K00558	162.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0176506_6	phrog_116	193.9	0	DNA methyltransferase	other
UniRef90	UHGV-0176506_6	UniRef90_A0A316NA61	370.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0176506_6	718252.FP2_16350	335.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0176506_6	oMTase_00004	196.6	0	orphan methyltransferase	RM
Pfam	UHGV-0176506_6	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0176506_6	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0176506_6	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0176506_6	PF00145,TIGR00675	N/A	N/A	N/A	N/A
PHROG	UHGV-0176506_9	phrog_419	81.8	9.3e-24	N/A	unknown function
UniRef90	UHGV-0176506_9	UniRef90_A0A0E2BM07	68.9	0.00000000000629	N/A	N/A
eggNOG-mapper	UHGV-0176506_9	1443122.Z958_05825	84.7	3.6e-19	N/A	N/A
PHROG	UHGV-0176506_17	phrog_2245	92.4	5.1e-27	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0176506_17	UniRef90_A0A4U9RLZ8	69.7	0.000000000000121	N/A	N/A
eggNOG-mapper	UHGV-0176506_17	706433.HMPREF9430_01279	75.5	1.33e-16	N/A	N/A
structural_annotation	UHGV-0176506_17	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176506_20	318464.IO99_07375	77.8	2.45e-17	N/A	N/A
KOfam	UHGV-0176506_23	K03091	78.7	1.1e-22	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-0176506_23	phrog_351	42.4	1.5e-20	RNA polymerase sigma factor	transcription regulation
eggNOG-mapper	UHGV-0176506_23	908338.HMPREF9286_1675	52.8	0.000007	Belongs to the sigma-70 factor family	N/A
Pfam	UHGV-0176506_23	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0176506_23	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-0176506_23	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0176506_23	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0176506_23	PF04542,PF08281,MF_00962,NF006158,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0176506_25	phrog_36	48.5	0.0000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176506_25	UniRef90_A0A7X9GB27	73.6	0.00000000000000672	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0176506_25	1540257.JQMW01000004_gene433	61.6	0.0000000000811	N/A	N/A
structural_annotation	UHGV-0176506_26	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0176506_27	phrog_22978	291.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0176506_27	1410650.JHWL01000003_gene2814	199.0	0	N/A	N/A
Pfam	UHGV-0176506_27	PF00583	N/A	N/A	Acetyltransferase (GNAT) family	Acetyltransf_1
KOfam	UHGV-0176506_29	K01447	56.6	5.3e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0176506_29	phrog_15001	128.6	5.5e-38	endolysin	lysis
UniRef90	UHGV-0176506_29	UniRef90_R6U0F7	257.0	0	Putative lipoprotein	N/A
eggNOG-mapper	UHGV-0176506_29	552398.HMPREF0866_01156	163.0	0	Ami_2	N/A
Pfam	UHGV-0176506_29	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0176506_29	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
PHROG	UHGV-0176506_30	phrog_1129	68.3	8.3e-20	holin	lysis
UniRef90	UHGV-0176506_30	UniRef90_A0A416MDZ9	140.0	9.71941e-42	Enolase	N/A
eggNOG-mapper	UHGV-0176506_30	742740.HMPREF9474_03522	124.0	7.6e-36	N/A	N/A
Pfam	UHGV-0176506_30	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0176506_30	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0176506_31	phrog_918	96.7	1.3e-28	N/A	unknown function
UniRef90	UHGV-0176506_31	UniRef90_Q5ULN6	94.4	2.68e-23	Orf78	N/A
eggNOG-mapper	UHGV-0176506_31	298338.Q5ULN6_9CAUD	94.4	4.5e-24	N/A	N/A
Pfam	UHGV-0176506_31	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0176506_31	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0176506_33	phrog_37604	159.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0176506_33	1232443.BAIA02000078_gene10	124.0	6.16e-34	N/A	N/A
NCBIFam	UHGV-0176506_34	NF040910.1	N/A	N/A	CD1375 family protein	N/A
COG	UHGV-0176506_36	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0176506_39	phrog_511	67.8	1e-19	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0176506_39	657322.FPR_02360	71.2	0.00000000029	N/A	N/A
structural_annotation	UHGV-0176506_39	PF11134,MF_00923,NF010237,NF038128,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176506_40	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0176506_42	phrog_14242	99.1	1.7e-29	major head protein	head and packaging
UniRef90	UHGV-0176506_42	UniRef90_A0A3D2CI53	323.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0176506_42	871968.DESME_08900	65.9	0.00000000705	N/A	N/A
NCBIFam	UHGV-0176506_42	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0176506_42	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0176506_44	phrog_156	115.3	6.3e-35	portal protein	head and packaging
eggNOG-mapper	UHGV-0176506_44	588581.Cpap_1526	294.0	0	N/A	N/A
structural_annotation	UHGV-0176506_44	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0176506_47	K06909	123.9	1.7e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0176506_47	phrog_979	134.3	5.5001e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0176506_47	UniRef90_A0A7X1LWQ0	458.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0176506_47	1232449.BAHV02000016_gene1824	402.0	0	N/A	N/A
Pfam	UHGV-0176506_47	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0176506_47	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0176506_47	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0176506_48	K07474	57.0	6.7e-16	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0176506_48	phrog_51	68.9	1e-19	terminase small subunit	head and packaging
Pfam	UHGV-0176506_48	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
structural_annotation	UHGV-0176506_49	PF13973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176506_53	626523.GCWU000342_00291	50.8	0.00000426	N/A	N/A
Pfam	UHGV-0176506_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176506_53	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
eggNOG-mapper	UHGV-0176506_55	658655.HMPREF0988_00918	49.7	0.000000566	N/A	N/A
eggNOG-mapper	UHGV-0176506_56	1235790.C805_00060	76.3	0.0000000000000735	N/A	N/A
eggNOG-mapper	UHGV-0176506_57	1408437.JNJN01000043_gene802	108.0	1.01e-28	N/A	N/A
structural_annotation	UHGV-0176506_58	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
KOfam	UHGV-0176506_59	K14059	187.7	0	int; integrase	N/A
PHROG	UHGV-0176506_59	phrog_1	176.5	0	integrase	integration and excision
UniRef90	UHGV-0176506_59	UniRef90_A0A1C7G906	213.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0176506_59	887325.HMPREF0381_0346	201.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0176506_59	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0176506_59	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0176506_59	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0176506_59	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176506_60	UniRef90_A0A1Q6SAI0	127.0	1.12e-34	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0176506_60	556261.HMPREF0240_01759	53.5	0.00000186	Putative restriction endonuclease	N/A
Pfam	UHGV-0176506_60	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0176506_60	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0176506_60	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0176506_66	phrog_8	45.3	0.000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176506_66	UniRef90_A0A3D0NVE8	85.1	3.88e-19	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0176506_66	1378168.N510_01712	67.4	0.00000000000565	N/A	N/A
structural_annotation	UHGV-0176506_66	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0176506_68	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
PHROG	UHGV-0176506_72	phrog_659	49.4	0.000000000000066	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176506_72	UniRef90_A0A6N9QJT6	215.0	0	N/A	N/A
eggNOG-mapper	UHGV-0176506_72	33035.JPJF01000135_gene5082	126.0	1.43e-33	N/A	N/A
Pfam	UHGV-0176506_72	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0176506_72	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176506_73	UniRef90_B0PAM4	148.0	6.96025e-42	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0176506_73	1308866.J416_09399	57.0	0.000000362	YqaJ viral recombinase family	N/A
COG	UHGV-0176506_73	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0176506_73	PF12684,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0176506_74	phrog_72	66.8	3.5e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176506_74	UniRef90_A0A8D9PDS2	154.0	2.10195e-44	NinB protein	N/A
eggNOG-mapper	UHGV-0176506_74	445972.ANACOL_01825	122.0	1.06e-32	N/A	N/A
structural_annotation	UHGV-0176506_74	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0176506_75	phrog_7566	99.4	2e-29	N/A	unknown function
UniRef90	UHGV-0176506_76	UniRef90_A0A098GES5	107.0	3.07e-28	Putative phage associated protein	N/A
structural_annotation	UHGV-0176506_76	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A