UHGV-0176722 (vOTU-070925)

Viral Genome: UHGV-0176722

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0176722
vOTU ID	vOTU-070925
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_592474
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.35 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9804
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.9
Jumbo phage	No

Genome content
Genome length (bp)	43,416
GC content	40.87%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	75
CDS density	90%
Average CDS length (bps)	521.32
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0176722_2	phrog_6058	51.4	0.000000000000012	N/A	unknown function
UniRef90	UHGV-0176722_2	UniRef90_A0A2V1JQ38	63.9	0.0000000000317	Glycogen synthase	N/A
eggNOG-mapper	UHGV-0176722_2	742733.HMPREF9469_05094	60.8	0.0000000000857	N/A	N/A
structural_annotation	UHGV-0176722_6	PF13601,MF_01819,NF038251,COG1846	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176722_10	397290.C810_05154	46.2	0.0000041	N/A	N/A
structural_annotation	UHGV-0176722_11	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-0176722_13	K22300	45.3	0.0000000000018	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0176722_13	UniRef90_A0A412ELD4	114.0	7e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176722_13	1235801.C822_00106	55.8	0.0000000012	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0176722_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176722_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0176722_13	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_14	phrog_2967	46.5	0.00000000000038	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176722_14	UniRef90_A0A416SLU4	171.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176722_14	1497679.EP56_05520	59.3	0.00000000626	Helix-turn-helix	N/A
Pfam	UHGV-0176722_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176722_14	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0176722_14	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0176722_17	K07705	136.0	3.09999e-40	lytT, lytR; two-component system, LytTR family, response regulator LytT	N/A
PHROG	UHGV-0176722_17	phrog_8810	131.3	8e-39	N/A	unknown function
UniRef90	UHGV-0176722_17	UniRef90_UPI001D0E4226	471.0	0	LytTR family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0176722_17	556261.HMPREF0240_03082	141.0	9.28e-39	response regulator	N/A
Pfam	UHGV-0176722_17	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-0176722_17	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-0176722_17	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
structural_annotation	UHGV-0176722_17	PF04397,PF00072,MF_00981,NF010684,COG3279	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_18	phrog_8545	66.5	4.1e-19	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0176722_18	UniRef90_UPI001C0EAFDF	262.0	0	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-0176722_18	1304866.K413DRAFT_0836	188.0	0	tRNA_anti-like	N/A
Pfam	UHGV-0176722_18	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-0176722_18	PF12869,MF_00720,TIGR03943,COG5235	N/A	N/A	N/A	N/A
KOfam	UHGV-0176722_19	K14059	102.8	6.5e-30	int; integrase	N/A
PHROG	UHGV-0176722_19	phrog_1	131.5	9.2e-39	integrase	integration and excision
UniRef90	UHGV-0176722_19	UniRef90_A0A414EG15	654.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0176722_19	1235792.C808_05256	358.0	0	Belongs to the 'phage' integrase family	N/A
COG	UHGV-0176722_19	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0176722_19	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0176722_20	K07273	204.5	0	acm; lysozyme	N/A
PHROG	UHGV-0176722_20	phrog_291	166.9	0	endolysin	lysis
UniRef90	UHGV-0176722_20	UniRef90_A0A1C5RZF8	838.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0176722_20	476272.RUMHYD_02876	274.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0176722_20	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0176722_20	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0176722_20	PF01183,PF18342,PF14603,NF040678,TIGR04303,COG3757,COG3807	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_24	phrog_6616	528.5	0	tail protein	tail
UniRef90	UHGV-0176722_24	UniRef90_A0A395X7B3	1239.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0176722_24	33035.JPJF01000043_gene1002	253.0	0	N/A	N/A
structural_annotation	UHGV-0176722_24	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_25	phrog_1194	44.3	0.0000000000028	N/A	unknown function
structural_annotation	UHGV-0176722_25	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_26	phrog_1535	465.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0176722_26	UniRef90_A0A173R880	521.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0176722_26	476272.RUMHYD_01785	513.0	0	phage tail tape measure protein	N/A
COG	UHGV-0176722_26	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176722_26	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_27	phrog_706	122.3	4.2e-36	N/A	unknown function
UniRef90	UHGV-0176722_27	UniRef90_UPI001BAD00AD	205.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0176722_27	411459.RUMOBE_01383	322.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0176722_27	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0176722_27	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_28	phrog_11299	70.4	2.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0176722_28	33035.JPJF01000106_gene3125	62.8	0.00000000015	N/A	N/A
structural_annotation	UHGV-0176722_28	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_29	phrog_3099	131.1	7.7e-39	N/A	unknown function
eggNOG-mapper	UHGV-0176722_29	411902.CLOBOL_00129	169.0	0	N/A	N/A
structural_annotation	UHGV-0176722_29	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_30	phrog_3266	92.6	3.6e-27	tail completion	connector
eggNOG-mapper	UHGV-0176722_30	476272.RUMHYD_01781	151.0	1.54143e-44	N/A	N/A
structural_annotation	UHGV-0176722_30	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_31	phrog_556	61.3	1.3e-17	minor head protein	head and packaging
UniRef90	UHGV-0176722_31	UniRef90_UPI000E4989EB	303.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0176722_31	476272.RUMHYD_01780	154.0	0	N/A	N/A
Pfam	UHGV-0176722_31	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0176722_31	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_32	phrog_3366	97.7	1.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0176722_32	476272.RUMHYD_01779	159.0	0	N/A	N/A
structural_annotation	UHGV-0176722_32	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_33	phrog_8680	238.2	0	N/A	unknown function
UniRef90	UHGV-0176722_33	UniRef90_UPI001C0F342A	428.0	0	N/A	N/A
eggNOG-mapper	UHGV-0176722_33	411470.RUMGNA_02208	273.0	0	N/A	N/A
Pfam	UHGV-0176722_33	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0176722_33	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_35	phrog_1129	75.8	4e-22	holin	lysis
UniRef90	UHGV-0176722_35	UniRef90_A0A395X7B2	174.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0176722_35	411461.DORFOR_00721	113.0	1.02e-31	N/A	N/A
Pfam	UHGV-0176722_35	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0176722_35	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_36	phrog_541	89.1	2.4e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0176722_36	476272.RUMHYD_01778	102.0	2.03e-25	N/A	N/A
PHROG	UHGV-0176722_38	phrog_544	163.6	0	major head protein	head and packaging
UniRef90	UHGV-0176722_38	UniRef90_A0A395X7A1	743.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0176722_38	1232453.BAIF02000011_gene3359	386.0	0	N/A	N/A
Pfam	UHGV-0176722_38	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0176722_38	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_39	phrog_194	66.9	4.4e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0176722_39	UniRef90_UPI001D14C9C8	194.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0176722_39	476272.RUMHYD_01775	195.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0176722_39	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0176722_40	phrog_28802	220.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0176722_40	476272.RUMHYD_01772	201.0	0	N/A	N/A
PHROG	UHGV-0176722_41	phrog_20016	202.9	0	N/A	unknown function
UniRef90	UHGV-0176722_41	UniRef90_A0A285PT46	166.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0176722_41	397290.C810_05214	183.0	0	N/A	N/A
structural_annotation	UHGV-0176722_41	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_42	phrog_16490	182.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0176722_42	397290.C810_01328	175.0	0	N/A	N/A
PHROG	UHGV-0176722_43	phrog_22984	88.9	3.8e-26	N/A	unknown function
PHROG	UHGV-0176722_44	phrog_21718	131.6	3.7e-39	N/A	unknown function
eggNOG-mapper	UHGV-0176722_44	476272.RUMHYD_01768	132.0	1.98e-37	N/A	N/A
UniRef90	UHGV-0176722_45	UniRef90_A0A395X7A4	177.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0176722_45	476272.RUMHYD_01766	117.0	3.56e-33	N/A	N/A
PHROG	UHGV-0176722_46	phrog_3754	113.3	1.8e-33	N/A	unknown function
eggNOG-mapper	UHGV-0176722_46	476272.RUMHYD_01764	180.0	0	N/A	N/A
PHROG	UHGV-0176722_47	phrog_581	271.5	0	minor head protein	head and packaging
UniRef90	UHGV-0176722_47	UniRef90_A0A395X791	749.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0176722_47	33035.JPJF01000106_gene3134	418.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0176722_47	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0176722_47	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176722_47	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176722_48	PF16255,NF007819,COG2845	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_50	phrog_533	287.5	0	portal protein	head and packaging
UniRef90	UHGV-0176722_50	UniRef90_A0A1C6CDM8	711.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0176722_50	33035.JPJF01000106_gene3135	546.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0176722_50	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0176722_52	K06909	420.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0176722_52	phrog_3717	161.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0176722_52	UniRef90_A0A412EKJ9	969.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0176722_52	33035.JPJF01000106_gene3136	670.0	0	Terminase small subunit	N/A
Pfam	UHGV-0176722_52	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0176722_52	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0176722_52	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0176722_52	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0176722_52	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0176722_52	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_53	phrog_33130	106.0	1.5e-31	N/A	unknown function
structural_annotation	UHGV-0176722_53	PF10922,MF_00839	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176722_54	411470.RUMGNA_03785	57.8	0.00000000595	N/A	N/A
AcrCatalog	UHGV-0176722_54	cluster_32378	70.1	3.67e-18	NA	N/A
eggNOG-mapper	UHGV-0176722_55	1410625.JHWK01000002_gene45	60.8	0.00000000047	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0176722_55	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0176722_55	PF08965,NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176722_56	UniRef90_E9RTH1	77.0	3.59e-16	HTH luxR-type domain-containing protein	N/A
structural_annotation	UHGV-0176722_56	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176722_58	476272.RUMHYD_03348	65.1	0.0000000000101	N/A	N/A
PHROG	UHGV-0176722_61	phrog_8684	112.1	2.6e-33	N/A	unknown function
UniRef90	UHGV-0176722_61	UniRef90_A0A173W6W0	199.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-0176722_61	411470.RUMGNA_02199	136.0	4.42e-39	N/A	N/A
Pfam	UHGV-0176722_61	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0176722_61	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0176722_61	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_62	phrog_20593	79.6	2.4e-23	N/A	unknown function
AcrCatalog	UHGV-0176722_65	cluster_11670	42.0	0.0000000847	NA	N/A
UniRef90	UHGV-0176722_66	UniRef90_A0A3E5EPV7	121.0	2.12e-33	N/A	N/A
Pfam	UHGV-0176722_66	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0176722_67	phrog_419	105.3	7.4e-31	N/A	unknown function
UniRef90	UHGV-0176722_67	UniRef90_A6MAI4	154.0	0	Gp119	N/A
eggNOG-mapper	UHGV-0176722_67	768486.EHR_02665	155.0	0	N/A	N/A
structural_annotation	UHGV-0176722_67	PF14083	N/A	N/A	N/A	N/A
KOfam	UHGV-0176722_69	K19779	56.3	5.4e-16	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0176722_69	phrog_599	57.7	3.4e-16	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0176722_69	UniRef90_A0A317UED7	115.0	1.11e-32	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0176722_69	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0176722_69	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0176722_69	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
KOfam	UHGV-0176722_70	K07729	61.2	2.5e-17	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0176722_70	phrog_8	52.9	0.0000000000000099	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176722_70	UniRef90_UPI001C10B5DE	60.1	0.000000000124	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176722_70	411459.RUMOBE_01373	62.0	0.0000000000171	Transcriptional	N/A
Pfam	UHGV-0176722_70	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176722_70	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0176722_70	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176722_72	UniRef90_A0A412ELN5	169.0	0	LexA_DNA_bind domain-containing protein	N/A
Pfam	UHGV-0176722_72	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0176722_72	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0176722_72	PF01726,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_74	phrog_8841	553.3	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176722_74	UniRef90_A0A412EL97	1219.0	0	N/A	N/A
eggNOG-mapper	UHGV-0176722_74	476272.RUMHYD_01742	783.0	0	N/A	N/A
Pfam	UHGV-0176722_74	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0176722_74	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0176722_74	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176722_74	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
PHROG	UHGV-0176722_75	phrog_11992	42.9	0.000000000011	N/A	unknown function
UniRef90	UHGV-0176722_75	UniRef90_A0A412EM56	184.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0176722_75	1304866.K413DRAFT_0824	80.1	1.35e-17	CHC2 zinc finger	N/A
COG	UHGV-0176722_75	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A