UHGV-0176757 (vOTU-010965)

Viral Genome: UHGV-0176757

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0176757
vOTU ID	vOTU-010965
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_562821
Associated BioSample	SAMN06233224
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.53 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9807
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.11
Jumbo phage	No

Genome content
Genome length (bp)	45,418
GC content	32.87%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	84%
Average CDS length (bps)	578.23
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0176757_1	phrog_1706	56.6	4.4e-16	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0176757_1	1499968.TCA2_4616	55.1	0.0000067	DNA catabolic process, exonucleolytic	N/A
COG	UHGV-0176757_1	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-0176757_1	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_2	phrog_159	40.0	0.000000000043	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0176757_2	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_4	phrog_1909	138.0	6.29996e-41	N/A	unknown function
eggNOG-mapper	UHGV-0176757_4	1458697.W6E8E8_9CAUD	62.0	0.0000000406	N/A	N/A
KOfam	UHGV-0176757_5	K09882	116.3	3.2e-34	cobS; cobaltochelatase CobS [EC:6.6.1.2]	N/A
PHROG	UHGV-0176757_5	phrog_249	161.4	0	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0176757_5	UniRef90_UPI001373859D	222.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0176757_5	278957.ABEA03000120_gene1205	145.0	1.66e-37	Associated with various cellular activities	N/A
Pfam	UHGV-0176757_5	PF07728	N/A	N/A	AAA domain (dynein-related subfamily)	AAA_5
Pfam	UHGV-0176757_5	PF08406	N/A	N/A	CbbQ/NirQ/NorQ C-terminal	CbbQ_C
COG	UHGV-0176757_5	COG0714	N/A	N/A	MoxR-like ATPase	N/A
structural_annotation	UHGV-0176757_5	PF07728,MF_00016,TIGR01650,COG0714	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_6	phrog_374	58.3	1.6e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0176757_6	320843.Q4ZBR0_9CAUD	56.2	0.0000000355	sequence-specific DNA binding transcription factor activity	N/A
PHROG	UHGV-0176757_7	phrog_6466	67.9	1.3e-19	DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176757_7	UniRef90_A0A843GQD5	110.0	3.61e-29	DNA_ligase_aden domain-containing protein	N/A
eggNOG-mapper	UHGV-0176757_7	720555.BATR1942_09670	60.1	0.000000000364	NAD-dependent DNA ligase adenylation domain	N/A
COG	UHGV-0176757_7	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
PHROG	UHGV-0176757_9	phrog_2002	42.4	0.000000000009	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0176757_9	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176757_10	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176757_15	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176757_19	PF08207,MF_00085,TIGR00037,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_20	phrog_309	124.2	9e-37	terminase small subunit	head and packaging
UniRef90	UHGV-0176757_20	UniRef90_A0A843GSL4	131.0	5.85e-35	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176757_20	742733.HMPREF9469_01828	100.0	2.7e-24	transposase activity	N/A
Pfam	UHGV-0176757_20	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0176757_20	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-0176757_21	K06909	285.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0176757_21	phrog_3717	128.5	2e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0176757_21	UniRef90_A0A349YI29	656.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0176757_21	536232.CLM_2529	461.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0176757_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0176757_21	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0176757_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0176757_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0176757_21	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_25	phrog_1382	49.1	0.000000000000061	N/A	unknown function
NCBIFam	UHGV-0176757_25	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0176757_25	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_26	phrog_443	56.3	9.5e-16	holin	lysis
UniRef90	UHGV-0176757_26	UniRef90_UPI000C75746C	105.0	1.94e-28	holin	N/A
eggNOG-mapper	UHGV-0176757_26	626523.GCWU000342_01012	86.7	2.11e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0176757_26	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0176757_26	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_27	phrog_355	52.4	0.0000000000000068	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176757_27	UniRef90_A0A385Q0Q2	106.0	4.76e-28	N/A	N/A
eggNOG-mapper	UHGV-0176757_27	1256908.HMPREF0373_00479	99.8	4.36e-26	N/A	N/A
Pfam	UHGV-0176757_27	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0176757_27	PF14359	N/A	N/A	N/A	N/A
KOfam	UHGV-0176757_28	K01448	128.7	5.7e-38	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0176757_28	phrog_435	191.6	0	endolysin	lysis
UniRef90	UHGV-0176757_28	UniRef90_B0G4K0	273.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0176757_28	411461.DORFOR_01187	273.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0176757_28	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0176757_28	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0176757_28	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0176757_28	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_29	phrog_64	109.2	2.9e-32	portal protein	head and packaging
UniRef90	UHGV-0176757_29	UniRef90_A0A843GSM3	407.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0176757_29	1121342.AUCO01000012_gene1700	148.0	2.23e-36	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0176757_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0176757_29	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0176757_30	K11044	68.1	1.5e-19	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-0176757_30	phrog_1657	162.5	0	head morphogenesis	head and packaging
UniRef90	UHGV-0176757_30	UniRef90_A0A349YJR5	705.0	0	ADPrib_exo_Tox domain-containing protein	N/A
eggNOG-mapper	UHGV-0176757_30	1567015.A0A0A7RUI1_9VIRU	152.0	5.26e-36	Phage Mu protein F like protein	N/A
Pfam	UHGV-0176757_30	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
structural_annotation	UHGV-0176757_30	PF03496,NF040688	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176757_32	PF06133	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_33	phrog_1315	42.1	0.000000000011	N/A	unknown function
PHROG	UHGV-0176757_34	phrog_2303	80.6	2.4e-23	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0176757_34	997296.PB1_16214	65.1	0.000000000667	N/A	N/A
structural_annotation	UHGV-0176757_34	PF10788,MF_02110	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176757_35	1158607.UAU_01759	53.9	0.000000221	N/A	N/A
structural_annotation	UHGV-0176757_35	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_36	phrog_29	265.5	0	major head protein	head and packaging
UniRef90	UHGV-0176757_36	UniRef90_UPI00082C04A5	380.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0176757_36	1158612.I580_01912	326.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0176757_36	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0176757_36	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_38	phrog_4020	65.0	1.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0176757_38	1121342.AUCO01000012_gene1692	52.0	0.000000132	N/A	N/A
structural_annotation	UHGV-0176757_39	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176757_40	632292.Calhy_0769	79.3	1.34e-17	Phage virion morphogenesis	N/A
COG	UHGV-0176757_40	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176757_40	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_41	phrog_7585	67.3	2.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0176757_41	1196322.A370_04060	63.5	0.0000000000557	N/A	N/A
structural_annotation	UHGV-0176757_41	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_42	phrog_6686	144.6	5.80138e-43	tail tube protein	tail
UniRef90	UHGV-0176757_42	UniRef90_A0A1C6KI12	165.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0176757_42	1304880.JAGB01000002_gene2211	117.0	1.48e-30	N/A	N/A
structural_annotation	UHGV-0176757_42	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_43	phrog_6280	116.2	1.8e-34	N/A	unknown function
UniRef90	UHGV-0176757_43	UniRef90_A0A8J6PH67	115.0	1.39e-29	Esterase	N/A
eggNOG-mapper	UHGV-0176757_43	445335.CBN_3078	103.0	7.08e-26	N/A	N/A
PHROG	UHGV-0176757_44	phrog_1533	487.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0176757_44	UniRef90_A0A351TJS6	369.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0176757_44	411473.RUMCAL_03183	365.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0176757_44	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0176757_44	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0176757_44	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0176757_44	PF10145,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_45	phrog_36410	110.0	8.3e-33	N/A	unknown function
UniRef90	UHGV-0176757_45	UniRef90_A0A7X9C3E1	334.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0176757_45	536232.CLM_2045	130.0	5.94e-33	Phage tail protein	N/A
Pfam	UHGV-0176757_45	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0176757_45	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0176757_45	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_46	phrog_538	249.8	0	minor tail protein	tail
UniRef90	UHGV-0176757_46	UniRef90_UPI000717641B	190.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0176757_46	536232.CLM_2044	176.0	0	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0176757_46	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0176757_46	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_47	phrog_1220	226.4	0	head protein	head and packaging
UniRef90	UHGV-0176757_47	UniRef90_A0A6B3YJZ4	153.0	1.09e-40	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0176757_47	1033737.CAEV01000028_gene283	158.0	3.8816e-43	N/A	N/A
structural_annotation	UHGV-0176757_47	PF08931,PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_48	phrog_937	63.2	4.6e-18	hemolysin	other
eggNOG-mapper	UHGV-0176757_48	742740.HMPREF9474_03172	114.0	9.57e-32	N/A	N/A
KOfam	UHGV-0176757_51	K02316	137.8	9.49996e-41	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0176757_51	phrog_47	133.3	2.4e-39	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176757_51	UniRef90_A0A843GN62	344.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0176757_51	573061.Clocel_1457	85.9	0.00000000000000145	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-0176757_51	drt-UG29	43.9	1.9e-22	DRT	DRT
Pfam	UHGV-0176757_51	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0176757_51	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0176757_51	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0176757_51	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176757_52	PF08804	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176757_53	PF12643,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0176757_54	phrog_236	92.9	7.4e-27	nucleotide kinase	other
UniRef90	UHGV-0176757_54	UniRef90_UPI001D04CE99	124.0	1.41e-35	N/A	N/A
eggNOG-mapper	UHGV-0176757_54	1123263.AUKY01000015_gene1590	83.2	3.52e-20	N/A	N/A
Pfam	UHGV-0176757_54	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0176757_54	PF11753	N/A	N/A	N/A	N/A
KOfam	UHGV-0176757_55	K02337	280.3	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0176757_55	phrog_405	277.4	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176757_55	UniRef90_R6ZBL7	171.0	5.60519e-45	DNA polymerase III alpha subunit	N/A
eggNOG-mapper	UHGV-0176757_55	436114.SYO3AOP1_0632	181.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0176757_55	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0176757_55	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
COG	UHGV-0176757_55	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
KOfam	UHGV-0176757_56	K02337	359.0	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0176757_56	phrog_405	333.5	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176757_56	UniRef90_A0A843GPT9	550.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0176757_56	203123.OEOE_1000	215.0	0	DNA polymerase	N/A
Pfam	UHGV-0176757_56	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0176757_56	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0176757_56	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
COG	UHGV-0176757_56	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
PHROG	UHGV-0176757_58	phrog_799	84.8	1.1e-24	DNA methyltransferase	other
UniRef90	UHGV-0176757_58	UniRef90_UPI00164E7D72	261.0	0	sugar-phospahte nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0176757_58	1235797.C816_04032	179.0	0	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0176757_58	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0176757_58	PF13651,MF_00607,NF000077,COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0176757_59	K03553	181.0	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0176757_59	phrog_97	172.5	0	UvsX-like recombinase	other
UniRef90	UHGV-0176757_59	UniRef90_A0A843GSV7	388.0	0	RECA_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0176757_59	1121267.JHZL01000006_gene901	143.0	2.92e-37	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0176757_59	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0176757_59	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0176757_59	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
Pfam	UHGV-0176757_62	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N