UHGV-0176880 (vOTU-028929)

Viral Genome: UHGV-0176880

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0176880
vOTU ID	vOTU-028929
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_587729
Associated BioSample	SAMN09781721
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.58 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9789
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.73
Jumbo phage	No

Genome content
Genome length (bp)	20,880
GC content	53.89%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	26
CDS density	96%
Average CDS length (bps)	772.27
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0176880_1	phrog_13845	64.7	1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0176880_1	508419.F8J158_9CAUD	77.4	1.1e-16	N/A	N/A
Pfam	UHGV-0176880_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0176880_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0176880_2	phrog_9	239.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0176880_2	UniRef90_A0A2A7ALT4	1068.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0176880_2	610130.Closa_0741	627.0	0	Phage Terminase	N/A
Pfam	UHGV-0176880_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0176880_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0176880_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0176880_3	phrog_12	114.1	7.9e-34	portal protein	head and packaging
UniRef90	UHGV-0176880_3	UniRef90_A0A2A7B6S8	819.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0176880_3	349161.Dred_2606	278.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0176880_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0176880_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0176880_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0176880_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0176880_4	K01358	94.6	1.3e-27	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0176880_4	phrog_133	133.5	1.7e-39	head maturation protease	head and packaging
UniRef90	UHGV-0176880_4	UniRef90_UPI001C10F40E	158.0	4.34403e-44	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0176880_4	1121866.AUGK01000006_gene879	141.0	1.17e-38	Clp protease	N/A
Pfam	UHGV-0176880_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0176880_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0176880_4	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0176880_5	phrog_10	138.8	2.59997e-41	major head protein	head and packaging
UniRef90	UHGV-0176880_5	UniRef90_A0A2A7B712	919.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0176880_5	1235792.C808_00086	458.0	0	Phage capsid family	N/A
Pfam	UHGV-0176880_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0176880_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0176880_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0176880_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0176880_5	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0176880_6	phrog_749	58.6	8.6e-17	N/A	unknown function
UniRef90	UHGV-0176880_6	UniRef90_A0A7V7BBS9	69.7	0.000000000000234	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0176880_6	1235792.C808_00087	80.1	3.7e-18	N/A	N/A
PHROG	UHGV-0176880_7	phrog_19734	91.5	7.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0176880_7	349161.Dred_2602	74.7	0.00000000000000161	N/A	N/A
structural_annotation	UHGV-0176880_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176880_8	999413.HMPREF1094_02005	70.5	0.000000000000025	N/A	N/A
structural_annotation	UHGV-0176880_8	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0176880_9	phrog_5	41.2	0.000000000026	tail completion or Neck1 protein	connector
UniRef90	UHGV-0176880_9	UniRef90_A0A1C6FG30	135.0	1.59e-37	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0176880_9	1235798.C817_04589	109.0	5.68e-28	N/A	N/A
structural_annotation	UHGV-0176880_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0176880_10	phrog_88	102.1	5.2e-30	major tail protein	tail
UniRef90	UHGV-0176880_10	UniRef90_UPI0018771F27	132.0	2.06e-35	phage tail protein	N/A
eggNOG-mapper	UHGV-0176880_10	349161.Dred_2600	67.8	0.0000000000646	N/A	N/A
NCBIFam	UHGV-0176880_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0176880_10	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0176880_13	phrog_9959	82.9	2e-24	tail length tape measure protein	tail
UniRef90	UHGV-0176880_13	UniRef90_A0A2A7B6K1	1436.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0176880_13	596328.HMPREF0578_1241	151.0	1.7e-34	phage tail tape measure protein	N/A
Pfam	UHGV-0176880_13	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0176880_13	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0176880_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0176880_13	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0176880_14	phrog_33	88.2	1.5e-25	distal tail protein Dit	tail
UniRef90	UHGV-0176880_14	UniRef90_A0A173Z1X4	148.0	1.11e-40	Phage-related protein	N/A
eggNOG-mapper	UHGV-0176880_14	1123315.AUIP01000014_gene1961	99.4	1.32e-22	tail component	N/A
COG	UHGV-0176880_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0176880_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0176880_15	phrog_1067	192.9	0	minor head protein	head and packaging
UniRef90	UHGV-0176880_15	UniRef90_A0A2A7AM44	700.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0176880_15	1123263.AUKY01000068_gene489	192.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0176880_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0176880_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0176880_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0176880_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0176880_17	K03651	55.0	0.0000000000000012	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-0176880_17	phrog_7158	146.4	1.4013e-43	N/A	unknown function
UniRef90	UHGV-0176880_17	UniRef90_UPI000CF6BF4A	205.0	0	metallophosphoesterase	N/A
eggNOG-mapper	UHGV-0176880_17	862514.HMPREF0623_0302	105.0	1.33e-20	Calcineurin-like phosphoesterase	N/A
Pfam	UHGV-0176880_17	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
structural_annotation	UHGV-0176880_17	PF14582,MF_00905,NF008359,COG5555	N/A	N/A	N/A	N/A
KOfam	UHGV-0176880_18	K07273	162.5	0	acm; lysozyme	N/A
PHROG	UHGV-0176880_18	phrog_291	135.1	6.10001e-40	endolysin	lysis
UniRef90	UHGV-0176880_18	UniRef90_UPI001D0EE7D8	273.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0176880_18	748224.HMPREF9436_00154	252.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0176880_18	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0176880_18	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0176880_18	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0176880_20	phrog_15303	85.4	4.8e-25	N/A	unknown function
UniRef90	UHGV-0176880_23	UniRef90_A0A1Q9JGI6	96.3	1.01e-22	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0176880_23	1033733.CAEK01000007_gene1628	103.0	3.46e-26	N/A	N/A
structural_annotation	UHGV-0176880_23	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176880_24	742740.HMPREF9474_00056	117.0	4.73e-29	N/A	N/A