UHGV-0176892 (vOTU-046601)

Viral Genome: UHGV-0176892

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0176892
vOTU ID	vOTU-046601
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_584458
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.67
Jumbo phage	No

Genome content
Genome length (bp)	40,991
GC content	46.69%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	92%
Average CDS length (bps)	569.18
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0176892_1	phrog_18725	74.2	2.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0176892_1	1226322.HMPREF1545_00062	67.0	0.00000000000167	N/A	N/A
PHROG	UHGV-0176892_2	phrog_13879	294.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0176892_2	1120746.CCNL01000014_gene2107	305.0	0	N/A	N/A
structural_annotation	UHGV-0176892_2	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_3	phrog_1194	51.8	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0176892_3	1120746.CCNL01000014_gene2106	130.0	2.32e-37	N/A	N/A
structural_annotation	UHGV-0176892_3	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0176892_4	K10421	41.8	0.0000000000061	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0176892_4	phrog_1535	252.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0176892_4	1235800.C819_00476	207.0	0	tape measure	N/A
COG	UHGV-0176892_4	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0176892_5	phrog_706	119.3	3e-35	N/A	unknown function
UniRef90	UHGV-0176892_5	UniRef90_R5H1B0	391.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0176892_5	1235790.C805_00084	187.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0176892_5	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0176892_5	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176892_6	UniRef90_A0A2Z4QA03	80.9	9.24e-17	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-0176892_6	397290.C810_05234	103.0	2.58e-26	N/A	N/A
structural_annotation	UHGV-0176892_6	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_7	phrog_3099	143.8	9.20653e-43	N/A	unknown function
UniRef90	UHGV-0176892_7	UniRef90_C4IFF0	54.7	0.00000832	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0176892_7	397290.C810_05233	214.0	0	N/A	N/A
structural_annotation	UHGV-0176892_7	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_8	phrog_3266	88.2	7.3e-26	tail completion	connector
eggNOG-mapper	UHGV-0176892_8	476272.RUMHYD_01781	127.0	7.67e-35	N/A	N/A
structural_annotation	UHGV-0176892_8	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_9	phrog_3366	107.3	1.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0176892_9	476272.RUMHYD_01779	139.0	3.89e-40	N/A	N/A
structural_annotation	UHGV-0176892_9	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_10	phrog_18218	146.6	5.74532e-44	N/A	unknown function
UniRef90	UHGV-0176892_10	UniRef90_A0A3D0FFR6	155.0	0	Ribonuclease	N/A
eggNOG-mapper	UHGV-0176892_10	411902.CLOBOL_03424	77.0	6.88e-17	N/A	N/A
structural_annotation	UHGV-0176892_10	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_11	phrog_541	107.0	8.8e-32	head-tail adaptor	connector
eggNOG-mapper	UHGV-0176892_11	476272.RUMHYD_01778	122.0	3e-33	N/A	N/A
PHROG	UHGV-0176892_12	phrog_544	169.2	0	major head protein	head and packaging
UniRef90	UHGV-0176892_12	UniRef90_A0A395X7A1	504.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0176892_12	476272.RUMHYD_01776	349.0	0	N/A	N/A
structural_annotation	UHGV-0176892_12	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_13	phrog_194	75.1	1.3e-21	head scaffolding protein	head and packaging
UniRef90	UHGV-0176892_13	UniRef90_UPI001D14C9C8	236.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0176892_13	476272.RUMHYD_01775	201.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0176892_13	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0176892_14	phrog_28802	297.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0176892_14	476272.RUMHYD_01772	244.0	0	N/A	N/A
PHROG	UHGV-0176892_15	phrog_20016	206.9	0	N/A	unknown function
UniRef90	UHGV-0176892_15	UniRef90_A0A345BPX4	107.0	4.57e-27	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0176892_15	397290.C810_05214	99.8	5.52e-25	N/A	N/A
structural_annotation	UHGV-0176892_15	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_16	phrog_16490	235.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0176892_16	476272.RUMHYD_01770	263.0	0	N/A	N/A
PHROG	UHGV-0176892_17	phrog_22984	113.0	1.2e-33	N/A	unknown function
PHROG	UHGV-0176892_18	phrog_21718	225.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0176892_18	476272.RUMHYD_01768	222.0	0	N/A	N/A
UniRef90	UHGV-0176892_19	UniRef90_A0A395X7A4	129.0	5.04e-37	CTP synthase	N/A
eggNOG-mapper	UHGV-0176892_19	476272.RUMHYD_01766	141.0	1.09021e-42	N/A	N/A
PHROG	UHGV-0176892_20	phrog_3754	84.3	1.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0176892_20	476272.RUMHYD_01764	184.0	0	N/A	N/A
PHROG	UHGV-0176892_21	phrog_581	218.6	0	minor head protein	head and packaging
UniRef90	UHGV-0176892_21	UniRef90_UPI000E4E3D5A	457.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0176892_21	663278.Ethha_0499	177.0	0	N/A	N/A
Pfam	UHGV-0176892_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0176892_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176892_21	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_22	phrog_556	83.7	1.8e-24	minor head protein	head and packaging
UniRef90	UHGV-0176892_22	UniRef90_UPI001C0ECC47	207.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0176892_22	665956.HMPREF1032_03062	82.4	4.63e-18	Minor capsid protein	N/A
Pfam	UHGV-0176892_22	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0176892_22	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176892_23	476272.RUMHYD_00002	148.0	1.26e-34	N/A	N/A
PHROG	UHGV-0176892_25	phrog_533	285.3	0	portal protein	head and packaging
UniRef90	UHGV-0176892_25	UniRef90_A0A1C6CDM8	626.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0176892_25	33035.JPJF01000106_gene3135	526.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0176892_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0176892_26	K06909	379.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0176892_26	phrog_3717	144.0	8.60397e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0176892_26	UniRef90_R5GX83	846.0	0	Prophage LambdaCh01 terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0176892_26	33035.JPJF01000106_gene3136	460.0	0	Terminase small subunit	N/A
Pfam	UHGV-0176892_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0176892_26	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0176892_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0176892_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0176892_26	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176892_27	PF07141,NF012144	N/A	N/A	N/A	N/A
KOfam	UHGV-0176892_28	K04769	56.4	9.5e-16	spoVT; AbrB family transcriptional regulator, stage V sporulation protein T	N/A
PHROG	UHGV-0176892_28	phrog_4681	44.3	0.0000000000025	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0176892_28	UniRef90_R5HAQ8	125.0	1.73e-36	Stage V sporulation protein T	N/A
eggNOG-mapper	UHGV-0176892_28	246194.CHY_0202	58.9	0.000000000677	stage V sporulation protein T	N/A
Pfam	UHGV-0176892_28	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0176892_28	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0176892_28	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
KOfam	UHGV-0176892_29	K00571	113.6	2.2e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0176892_29	phrog_498	478.2	0	DNA methyltransferase	other
UniRef90	UHGV-0176892_29	UniRef90_R5GWS3	668.0	0	DNA (Cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0176892_29	1423758.BN55_01455	497.0	0	DNA methylase	N/A
PADLOC	UHGV-0176892_29	MTase_II_00015	407.8	0	Type II methyltransferase	RM
Pfam	UHGV-0176892_29	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0176892_29	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0176892_29	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0176892_29	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_30	phrog_33130	50.6	0.000000000000028	N/A	unknown function
eggNOG-mapper	UHGV-0176892_31	476272.RUMHYD_01751	109.0	4.94e-30	N/A	N/A
PHROG	UHGV-0176892_32	phrog_3886	236.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0176892_32	1298920.KI911353_gene2686	247.0	0	N/A	N/A
KOfam	UHGV-0176892_33	K03744	130.2	2e-38	lemA; LemA protein	N/A
PHROG	UHGV-0176892_33	phrog_1383	140.0	1.19993e-41	virion structural protein	head and packaging
UniRef90	UHGV-0176892_33	UniRef90_A0A6N2WCF4	259.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-0176892_33	1298920.KI911353_gene2688	241.0	0	LemA family	N/A
Pfam	UHGV-0176892_33	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-0176892_33	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-0176892_33	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_35	phrog_24386	149.4	2.24208e-44	N/A	unknown function
eggNOG-mapper	UHGV-0176892_35	478749.BRYFOR_08546	149.0	4.25e-40	UMP catabolic process	N/A
COG	UHGV-0176892_35	COG0647	N/A	N/A	Ribonucleotide monophosphatase NagD, HAD superfamily	N/A
eggNOG-mapper	UHGV-0176892_38	742740.HMPREF9474_03128	124.0	5.87e-37	N/A	N/A
UniRef90	UHGV-0176892_39	UniRef90_A0A415TX35	55.8	0.00000044	BAH domain-containing protein	N/A
eggNOG-mapper	UHGV-0176892_39	476272.RUMHYD_03348	58.2	0.00000000616	N/A	N/A
structural_annotation	UHGV-0176892_39	PF18597	N/A	N/A	N/A	N/A
KOfam	UHGV-0176892_41	K07392	86.2	3.4e-25	PRS2; AAA family ATPase	N/A
PHROG	UHGV-0176892_41	phrog_3757	196.3	0	N/A	unknown function
UniRef90	UHGV-0176892_41	UniRef90_A0A1Q6KIJ0	508.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0176892_41	1235802.C823_01035	317.0	0	ATPase family associated with various cellular activities (AAA)	N/A
PADLOC	UHGV-0176892_41	IetA_00002	160.1	0	NA	ietAS
Pfam	UHGV-0176892_41	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
COG	UHGV-0176892_41	COG0464	N/A	N/A	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	N/A
structural_annotation	UHGV-0176892_41	PF00004,MF_00553,TIGR01242,COG1222	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176892_42	PF02452,NF010262,COG2337	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176892_45	PF04936	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_47	phrog_5810	84.5	1.8e-24	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0176892_47	742740.HMPREF9474_03117	177.0	0	N/A	N/A
structural_annotation	UHGV-0176892_47	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176892_49	UniRef90_UPI00164A90AD	124.0	1.42e-34	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0176892_49	1235800.C819_02254	115.0	7.93e-32	HNH nucleases	N/A
PHROG	UHGV-0176892_50	phrog_72	55.2	4.1e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0176892_50	411468.CLOSCI_00314	102.0	5.89e-25	N/A	N/A
structural_annotation	UHGV-0176892_50	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_51	phrog_7838	150.6	9.80909e-45	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176892_51	UniRef90_A0A8D9UGW3	208.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0176892_51	742767.HMPREF9456_02052	190.0	0	N/A	N/A
structural_annotation	UHGV-0176892_51	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_52	phrog_674	134.6	5.60519e-44	N/A	unknown function
UniRef90	UHGV-0176892_52	UniRef90_A0A416HMJ3	281.0	0	N/A	N/A
eggNOG-mapper	UHGV-0176892_52	411460.RUMTOR_02065	182.0	0	N/A	N/A
Pfam	UHGV-0176892_52	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0176892_52	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0176892_58	K18830	59.9	5.4e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0176892_58	phrog_8	54.3	0.000000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176892_58	UniRef90_N1ZZY4	120.0	1.39e-32	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0176892_58	97139.C824_05937	120.0	2.33e-33	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0176892_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176892_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0176892_58	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0176892_60	K19370	48.1	0.00000000000012	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-0176892_60	phrog_10292	68.9	4.8e-24	N/A	unknown function
UniRef90	UHGV-0176892_60	UniRef90_UPI0011DD6C00	127.0	8.72e-35	NINE protein	N/A
eggNOG-mapper	UHGV-0176892_60	665956.HMPREF1032_00562	105.0	5.14e-27	TM2 domain	N/A
Pfam	UHGV-0176892_60	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0176892_60	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0176892_60	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176892_60	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
KOfam	UHGV-0176892_61	K14059	174.0	0	int; integrase	N/A
PHROG	UHGV-0176892_61	phrog_1	165.7	0	integrase	integration and excision
UniRef90	UHGV-0176892_61	UniRef90_A0A396QHT0	466.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0176892_61	1304866.K413DRAFT_1180	429.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0176892_61	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0176892_61	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0176892_61	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0176892_61	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0176892_62	K07273	150.9	1.12104e-44	acm; lysozyme	N/A
PHROG	UHGV-0176892_62	phrog_291	128.0	1e-37	endolysin	lysis
UniRef90	UHGV-0176892_62	UniRef90_A0A1C5ZRX7	443.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0176892_62	658086.HMPREF0994_03328	184.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0176892_62	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0176892_62	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0176892_62	PF01183,TIGR00612,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0176892_63	phrog_18593	128.3	5e-38	N/A	unknown function
UniRef90	UHGV-0176892_63	UniRef90_R5HAU4	288.0	0	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-0176892_63	411460.RUMTOR_02099	135.0	1.47e-37	N/A	N/A
Pfam	UHGV-0176892_63	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0176892_63	PF14600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176892_66	1120746.CCNL01000014_gene2212	49.3	0.000000958	N/A	N/A