UHGV-0177212 (vOTU-081209)

Viral Genome: UHGV-0177212

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0177212
vOTU ID	vOTU-081209
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_581106
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.42 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9794
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.3
Jumbo phage	No

Genome content
Genome length (bp)	34,444
GC content	58.04%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	95%
Average CDS length (bps)	626.25
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0177212_1	phrog_5110	60.1	3.4e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0177212_1	UniRef90_UPI00195E8788	115.0	4.22e-31	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0177212_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0177212_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_2	phrog_9	237.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0177212_2	UniRef90_A0A6I7GGF0	917.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0177212_2	1235792.C808_00083	609.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0177212_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0177212_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0177212_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0177212_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_3	phrog_12	123.8	5.5e-37	portal protein	head and packaging
UniRef90	UHGV-0177212_3	UniRef90_UPI0018755FA4	503.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0177212_3	349161.Dred_2606	302.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0177212_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0177212_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0177212_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0177212_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0177212_4	K01358	139.6	3.20001e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0177212_4	phrog_94	259.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0177212_4	UniRef90_A0A1Y4BT12	331.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0177212_4	349161.Dred_2605	311.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0177212_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0177212_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0177212_4	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_5	phrog_10	150.1	2.24208e-44	major head protein	head and packaging
UniRef90	UHGV-0177212_5	UniRef90_G9YSC0	671.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0177212_5	1235792.C808_00086	398.0	0	Phage capsid family	N/A
Pfam	UHGV-0177212_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0177212_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0177212_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0177212_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0177212_5	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_6	phrog_749	64.2	1.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0177212_6	86416.Clopa_0342	62.8	0.0000000000187	N/A	N/A
PHROG	UHGV-0177212_7	phrog_19734	109.2	2.5e-32	N/A	unknown function
UniRef90	UHGV-0177212_7	UniRef90_A0A6I7GNS7	123.0	2.74e-33	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0177212_7	1235798.C817_04587	52.0	0.00000165	N/A	N/A
eggNOG-mapper	UHGV-0177212_8	908340.HMPREF9406_2574	85.9	3.44e-20	N/A	N/A
structural_annotation	UHGV-0177212_8	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_9	phrog_5	48.5	0.0000000000002	tail completion or Neck1 protein	connector
UniRef90	UHGV-0177212_9	UniRef90_R6UNR2	143.0	8.19003e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0177212_9	908340.HMPREF9406_2573	143.0	1.37005e-41	N/A	N/A
structural_annotation	UHGV-0177212_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_10	phrog_88	92.0	7.2e-27	major tail protein	tail
UniRef90	UHGV-0177212_10	UniRef90_G9YSC5	124.0	2.55e-32	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0177212_10	33035.JPJF01000039_gene278	70.5	0.00000000000295	N/A	N/A
NCBIFam	UHGV-0177212_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0177212_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_13	phrog_6900	245.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0177212_13	UniRef90_A0A7X8M4B4	253.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0177212_13	1216932.CM240_0625	299.0	0	tape measure	N/A
COG	UHGV-0177212_13	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0177212_13	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_14	phrog_33	72.0	1.5e-20	distal tail protein Dit	tail
UniRef90	UHGV-0177212_14	UniRef90_A0A2X2UUQ3	162.0	1.4013e-45	Phage putative tail component	N/A
eggNOG-mapper	UHGV-0177212_14	536233.CLO_0897	88.2	2.17e-18	tail component	N/A
COG	UHGV-0177212_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0177212_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_15	phrog_1067	325.1	0	minor head protein	head and packaging
UniRef90	UHGV-0177212_15	UniRef90_A0A1C6H6B4	507.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0177212_15	1123263.AUKY01000068_gene489	369.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0177212_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0177212_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0177212_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0177212_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177212_16	UniRef90_A0A3A6E2U3	110.0	9.85e-26	N/A	N/A
PHROG	UHGV-0177212_20	phrog_240	51.7	0.000000000000012	head protein	head and packaging
eggNOG-mapper	UHGV-0177212_20	1452718.JBOY01000124_gene1279	50.8	0.00000647	Belongs to the glycosyl hydrolase 8 (cellulase D) family	N/A
COG	UHGV-0177212_20	COG3405	N/A	N/A	Endo-1,4-beta-D-glucanase Y	N/A
structural_annotation	UHGV-0177212_21	NF033746,COG3764	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_22	phrog_1863	71.1	9.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0177212_22	718252.FP2_04900	117.0	2.36e-33	N/A	N/A
PHROG	UHGV-0177212_23	phrog_443	56.7	7.3e-16	holin	lysis
UniRef90	UHGV-0177212_23	UniRef90_UPI0009B98E42	96.7	6.67e-25	holin	N/A
eggNOG-mapper	UHGV-0177212_23	626523.GCWU000342_01012	93.2	4.82e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0177212_23	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0177212_23	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0177212_24	K01447	61.8	1.6e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0177212_24	phrog_7698	183.6	0	endolysin	lysis
UniRef90	UHGV-0177212_24	UniRef90_A0A7D7GJS2	268.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0177212_24	877411.JMMA01000002_gene2384	241.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0177212_24	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0177212_24	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0177212_24	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0177212_24	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0177212_24	PF01510,PF08230,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177212_26	UniRef90_A0A6N3FXW7	144.0	2.70451e-43	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0177212_26	742738.HMPREF9460_04059	74.3	0.00000000000000133	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0177212_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0177212_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0177212_26	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0177212_27	K06400	308.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0177212_27	phrog_95	324.1	0	integrase	integration and excision
UniRef90	UHGV-0177212_27	UniRef90_A0A352ULE7	477.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0177212_27	1120746.CCNL01000010_gene1415	374.0	0	recombinase activity	N/A
Pfam	UHGV-0177212_27	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0177212_27	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0177212_27	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0177212_27	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177212_28	1262449.CP6013_2082	150.0	1.12104e-44	N/A	N/A
structural_annotation	UHGV-0177212_28	PF11631,TIGR03066	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177212_29	UniRef90_A0A1Y3ZTC9	107.0	7.86e-28	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0177212_29	693746.OBV_19770	55.8	0.0000000196	sequence-specific DNA binding	N/A
Pfam	UHGV-0177212_29	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0177212_29	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0177212_29	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0177212_30	K02342	138.8	4.19997e-41	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0177212_30	phrog_192	130.0	1.4e-38	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177212_30	UniRef90_A0A1Y4S764	145.0	3.75e-36	BRCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0177212_30	177437.HRM2_p00730	106.0	6.06e-24	EXOIII	N/A
PADLOC	UHGV-0177212_30	cd06127	105.7	7.7e-31	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0177212_30	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0177212_30	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-0177212_30	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0177212_30	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
KOfam	UHGV-0177212_33	K22300	59.2	9.5e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0177212_33	phrog_3	43.5	0.000000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-0177212_33	UniRef90_UPI001D013835	52.0	0.000000352	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0177212_33	1410650.JHWL01000006_gene1493	52.0	0.000000578	sequence-specific DNA binding	N/A
Pfam	UHGV-0177212_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0177212_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0177212_33	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_35	phrog_6499	106.2	2e-31	transcriptional regulator	transcription regulation
UniRef90	UHGV-0177212_35	UniRef90_UPI001BB4836B	112.0	1.1e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0177212_35	1203606.HMPREF1526_00992	104.0	1.42e-26	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0177212_35	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0177212_35	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0177212_35	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177212_36	PF21327	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_38	phrog_11233	76.3	4.6e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177212_38	UniRef90_A9VQX9	87.0	7.69e-17	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0177212_38	742738.HMPREF9460_04047	143.0	4.76e-39	DnaD domain protein	N/A
COG	UHGV-0177212_38	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0177212_38	PF13463,NF040642,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-0177212_39	K02314	272.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0177212_39	phrog_19	236.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177212_39	UniRef90_UPI00195856D7	396.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0177212_39	693746.OBV_27440	264.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0177212_39	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0177212_39	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0177212_39	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0177212_39	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0177212_40	K03496	175.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0177212_40	phrog_164	136.2	2.5e-40	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177212_40	UniRef90_UPI000318E277	266.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0177212_40	1007096.BAGW01000033_gene1614	256.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0177212_40	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0177212_40	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0177212_40	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0177212_41	K03497	89.2	2.4e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0177212_41	phrog_27290	349.7	0	N/A	unknown function
UniRef90	UHGV-0177212_41	UniRef90_A0A3D4EJM0	308.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0177212_41	742738.HMPREF9460_00856	272.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0177212_41	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0177212_41	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0177212_41	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_43	phrog_38832	42.4	0.0000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0177212_43	665956.HMPREF1032_03087	66.2	0.0000000000144	N/A	N/A
PHROG	UHGV-0177212_45	phrog_3136	137.6	3.80004e-41	N/A	unknown function
UniRef90	UHGV-0177212_45	UniRef90_A0A3D0HBD2	169.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0177212_45	1235793.C809_02645	68.9	0.0000000000192	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0177212_45	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0177212_45	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177212_46	UniRef90_UPI0013EF5B35	106.0	1.06e-27	N/A	N/A
eggNOG-mapper	UHGV-0177212_46	411470.RUMGNA_00214	70.1	0.000000000000324	N/A	N/A
Pfam	UHGV-0177212_46	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0177212_46	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_50	phrog_3584	73.3	3.4e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0177212_50	693746.OBV_19950	130.0	4.13e-34	N/A	N/A
structural_annotation	UHGV-0177212_50	PF11726	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177212_51	UniRef90_UPI001F232519	103.0	8.86e-28	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0177212_51	1226322.HMPREF1545_00110	98.6	1.39e-26	Cysteine-rich KTR	N/A
Pfam	UHGV-0177212_51	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0177212_51	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0177212_52	phrog_119	73.3	3.4e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177212_52	UniRef90_G9YSB5	148.0	3.92364e-44	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0177212_52	1235792.C808_00081	88.6	3.04e-21	HNH nucleases	N/A
Pfam	UHGV-0177212_52	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0177212_52	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A