UHGV-0177905 (vOTU-069438)

Viral Genome: UHGV-0177905

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0177905
vOTU ID	vOTU-069438
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_584638
Associated BioSample	SAMN09781790
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.23
Jumbo phage	No

Genome content
Genome length (bp)	42,612
GC content	38.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	77
CDS density	90%
Average CDS length (bps)	496.60
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0177905_1	1235802.C823_04724	109.0	1.04e-26	N/A	N/A
KOfam	UHGV-0177905_4	K18830	68.2	1.8e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0177905_4	phrog_2967	62.9	5.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0177905_4	UniRef90_A0A1Q6KIG7	220.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0177905_4	1235797.C816_03553	111.0	2.02e-29	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-0177905_4	retron_type_VI_hth_cluster2_1	49.1	0.0000000000001	N/A	Retron
Pfam	UHGV-0177905_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0177905_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0177905_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_6	phrog_14275	56.0	5.4e-16	N/A	unknown function
UniRef90	UHGV-0177905_6	UniRef90_UPI001C0EAFDF	146.0	4.35005e-41	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-0177905_6	1304866.K413DRAFT_0836	139.0	5.07e-39	tRNA_anti-like	N/A
Pfam	UHGV-0177905_6	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-0177905_6	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
KOfam	UHGV-0177905_7	K06400	226.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0177905_7	phrog_95	249.6	0	integrase	integration and excision
UniRef90	UHGV-0177905_7	UniRef90_A0A1Q6KI87	868.0	0	Resolvase/invertase-type recombinase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0177905_7	180332.JTGN01000010_gene4488	191.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0177905_7	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0177905_7	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0177905_7	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0177905_7	PF00239,PF13408,PF14235,NF041201,COG1961,COG1579	N/A	N/A	N/A	N/A
KOfam	UHGV-0177905_8	K01448	87.3	2.1e-25	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0177905_8	phrog_435	141.1	1.10002e-41	endolysin	lysis
UniRef90	UHGV-0177905_8	UniRef90_UPI000E552B56	485.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0177905_8	1283341.Q24LG3_BPPCD	189.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0177905_8	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
structural_annotation	UHGV-0177905_8	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_9	phrog_1129	89.4	2.3e-26	holin	lysis
UniRef90	UHGV-0177905_9	UniRef90_A0A412KF76	176.0	0	Holin	N/A
eggNOG-mapper	UHGV-0177905_9	1256908.HMPREF0373_00463	155.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0177905_9	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0177905_9	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_10	phrog_4105	92.5	3.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0177905_10	411459.RUMOBE_00911	157.0	0	N/A	N/A
PHROG	UHGV-0177905_12	phrog_18725	85.9	2.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0177905_12	1226322.HMPREF1545_00062	86.7	2.46e-19	N/A	N/A
PHROG	UHGV-0177905_14	phrog_13879	277.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0177905_14	1120746.CCNL01000014_gene2107	346.0	0	N/A	N/A
structural_annotation	UHGV-0177905_14	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_15	phrog_1194	45.7	0.000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0177905_15	1120746.CCNL01000014_gene2106	105.0	1.23e-27	N/A	N/A
structural_annotation	UHGV-0177905_15	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_16	phrog_1535	202.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0177905_16	UniRef90_H3SAA2	71.2	0.00000000695	Phage-like protein	N/A
eggNOG-mapper	UHGV-0177905_16	1235800.C819_00476	195.0	0	tape measure	N/A
COG	UHGV-0177905_16	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0177905_17	phrog_706	123.6	1.4e-36	N/A	unknown function
UniRef90	UHGV-0177905_17	UniRef90_C7GBZ7	260.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0177905_17	1235790.C805_00084	136.0	1.14e-37	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0177905_17	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0177905_17	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177905_18	UniRef90_A0A412KF72	291.0	0	RNA polymerase subunit sigma	N/A
Pfam	UHGV-0177905_18	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0177905_18	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_19	phrog_3099	85.9	5.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-0177905_19	552396.HMPREF0863_00272	62.8	0.000000000669	N/A	N/A
structural_annotation	UHGV-0177905_19	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177905_20	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_21	phrog_3366	91.7	7.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0177905_21	1235790.C805_00078	158.0	0	N/A	N/A
structural_annotation	UHGV-0177905_21	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_22	phrog_541	90.8	1.3e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0177905_22	476272.RUMHYD_01778	84.0	2.48e-18	N/A	N/A
PHROG	UHGV-0177905_23	phrog_544	137.5	9.90003e-41	major head protein	head and packaging
UniRef90	UHGV-0177905_23	UniRef90_A0A395X7A1	366.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0177905_23	476272.RUMHYD_01776	325.0	0	N/A	N/A
structural_annotation	UHGV-0177905_23	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_24	phrog_194	56.1	8.7e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-0177905_24	UniRef90_UPI000E538A87	115.0	9.31e-29	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0177905_24	476272.RUMHYD_01775	100.0	1.12e-23	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0177905_24	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0177905_26	phrog_1233	46.7	0.00000000000058	N/A	unknown function
eggNOG-mapper	UHGV-0177905_26	397290.C810_01336	120.0	3.66e-34	N/A	N/A
structural_annotation	UHGV-0177905_26	PF20352,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177905_27	658655.HMPREF0988_00915	119.0	2.61e-30	N/A	N/A
PHROG	UHGV-0177905_28	phrog_20016	218.2	0	N/A	unknown function
UniRef90	UHGV-0177905_28	UniRef90_A0A285PT46	158.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0177905_28	397290.C810_05214	224.0	0	N/A	N/A
structural_annotation	UHGV-0177905_28	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_29	phrog_16490	217.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0177905_29	397290.C810_01328	200.0	0	N/A	N/A
eggNOG-mapper	UHGV-0177905_30	658655.HMPREF0988_00918	87.0	9.11e-22	N/A	N/A
eggNOG-mapper	UHGV-0177905_31	658655.HMPREF0988_00919	82.8	4.7e-18	N/A	N/A
eggNOG-mapper	UHGV-0177905_32	1235790.C805_00057	60.8	0.0000000000163	N/A	N/A
structural_annotation	UHGV-0177905_32	PF04545,MF_00674,NF001067,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_33	phrog_581	214.2	0	minor head protein	head and packaging
UniRef90	UHGV-0177905_33	UniRef90_A0A6L5YIK0	565.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0177905_33	645991.Sgly_0338	166.0	6.95044e-43	N/A	N/A
Pfam	UHGV-0177905_33	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0177905_33	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177905_33	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_34	phrog_556	89.4	2.9e-26	minor head protein	head and packaging
UniRef90	UHGV-0177905_34	UniRef90_UPI000E4A8F9F	126.0	9.48e-35	minor capsid protein	N/A
eggNOG-mapper	UHGV-0177905_34	1449050.JNLE01000003_gene3886	51.6	0.00000247	N/A	N/A
Pfam	UHGV-0177905_34	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0177905_34	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_36	phrog_533	252.7	0	portal protein	head and packaging
UniRef90	UHGV-0177905_36	UniRef90_A0A3R5WTT1	926.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0177905_36	476272.RUMHYD_01758	320.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0177905_36	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0177905_37	K06909	218.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0177905_37	phrog_51	102.0	3.9e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0177905_37	UniRef90_A0A414LWL5	1081.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0177905_37	33035.JPJF01000106_gene3136	310.0	0	Terminase small subunit	N/A
Pfam	UHGV-0177905_37	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0177905_37	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0177905_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0177905_37	PF04466,PF17288,PF06056,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_38	phrog_33130	93.4	1.3e-27	N/A	unknown function
UniRef90	UHGV-0177905_38	UniRef90_A0A3B9CD52	127.0	8.45e-37	S1-like domain-containing protein	N/A
structural_annotation	UHGV-0177905_38	PF10922	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177905_41	1235790.C805_00098	92.8	1.72e-22	N/A	N/A
UniRef90	UHGV-0177905_43	UniRef90_A0A412KFA7	147.0	5.60519e-45	ABC transporter ATP-binding protein	N/A
KOfam	UHGV-0177905_47	K06223	240.4	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0177905_47	phrog_56	192.2	0	DNA methyltransferase	other
UniRef90	UHGV-0177905_47	UniRef90_A0A3R5ZUS2	514.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0177905_47	411468.CLOSCI_00302	437.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0177905_47	MTase_II_00030	267.4	0	Type II methyltransferase	RM
Pfam	UHGV-0177905_47	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0177905_47	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0177905_47	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177905_51	536232.CLM_1636	122.0	1.91e-32	N/A	N/A
structural_annotation	UHGV-0177905_51	PF17457	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_53	phrog_424	73.5	2.8e-21	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0177905_53	UniRef90_A0A2H4JC51	447.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-0177905_53	693746.OBV_43240	541.0	0	N/A	N/A
COG	UHGV-0177905_53	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0177905_53	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_54	phrog_874	175.3	0	N/A	unknown function
UniRef90	UHGV-0177905_54	UniRef90_A0A6N7W7Q7	230.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0177905_54	411468.CLOSCI_00298	183.0	0	N/A	N/A
structural_annotation	UHGV-0177905_54	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_55	phrog_20593	56.2	4.3e-16	N/A	unknown function
PHROG	UHGV-0177905_56	phrog_599	49.5	0.000000000000095	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0177905_56	UniRef90_A0A412KFB8	174.0	0	Restriction alleviation protein, Lar family	N/A
eggNOG-mapper	UHGV-0177905_56	1235790.C805_00069	87.0	1.45e-21	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0177905_56	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0177905_56	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0177905_56	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177905_57	UniRef90_UPI00192387A0	92.4	6.59e-21	N/A	N/A
PHROG	UHGV-0177905_58	phrog_8684	61.2	1.4e-17	N/A	unknown function
UniRef90	UHGV-0177905_58	UniRef90_A0A412FGY3	255.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0177905_58	1121097.JCM15093_2710	57.8	0.00000000692	YopX protein	N/A
Pfam	UHGV-0177905_58	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0177905_58	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_62	phrog_10455	85.8	4e-25	N/A	unknown function
UniRef90	UHGV-0177905_62	UniRef90_R7N9Z9	140.0	3.44005e-41	Conserved domain protein	N/A
KOfam	UHGV-0177905_65	K02315	147.0	1.59748e-43	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0177905_65	phrog_50	142.6	3.39955e-42	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177905_65	UniRef90_A0A1Q6KIH9	414.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0177905_65	742733.HMPREF9469_01844	228.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0177905_65	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0177905_65	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0177905_65	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_66	phrog_2514	88.5	7e-26	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177905_66	UniRef90_A0A174WT25	147.0	1.52e-39	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-0177905_66	742733.HMPREF9469_01845	182.0	0	N/A	N/A
structural_annotation	UHGV-0177905_66	PF10771,MF_01177,TIGR01610,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0177905_67	K01160	49.7	0.00000000000011	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0177905_67	phrog_1682	81.1	1.5e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177905_67	UniRef90_A0A412FH46	196.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0177905_67	1235790.C805_00029	157.0	0	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0177905_67	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0177905_67	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0177905_67	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_69	phrog_7566	100.1	1.2e-29	N/A	unknown function
UniRef90	UHGV-0177905_69	UniRef90_A0A412KF94	211.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0177905_69	411902.CLOBOL_05695	55.8	0.00000000726	N/A	N/A
PHROG	UHGV-0177905_70	phrog_72	58.4	1.1e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0177905_70	1304866.K413DRAFT_1197	115.0	2.56e-30	N/A	N/A
PHROG	UHGV-0177905_71	phrog_155	122.1	5.3e-36	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177905_71	UniRef90_A0A412KFC1	372.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0177905_71	357809.Cphy_2988	229.0	0	ERF superfamily	N/A
Pfam	UHGV-0177905_71	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0177905_71	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0177905_71	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0177905_72	phrog_674	175.9	0	N/A	unknown function
UniRef90	UHGV-0177905_72	UniRef90_A0A3R6B153	443.0	0	N/A	N/A
eggNOG-mapper	UHGV-0177905_72	411460.RUMTOR_02065	165.0	0	N/A	N/A
Pfam	UHGV-0177905_72	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0177905_72	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177905_74	PF15513,NF007469	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177905_76	PF11127	N/A	N/A	N/A	N/A