UHGV-0178176 (vOTU-108068)

Viral Genome: UHGV-0178176

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0178176
vOTU ID	vOTU-108068
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_583783
Associated BioSample	SAMN09781759
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.02 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9793
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.19
Jumbo phage	No

Genome content
Genome length (bp)	20,346
GC content	53.93%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	34
CDS density	97%
Average CDS length (bps)	583.32
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.02)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0178176_1	phrog_13339	344.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0178176_1	UniRef90_A0A412G4M4	276.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0178176_1	411490.ANACAC_00710	283.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0178176_1	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0178176_1	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0178176_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0178176_2	phrog_706	127.0	5.4e-38	N/A	unknown function
UniRef90	UHGV-0178176_2	UniRef90_UPI001E629CF3	120.0	9.24e-31	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0178176_2	120574.Q94M37_9CAUD	79.3	9.32e-16	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0178176_2	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0178176_2	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178176_3	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0178176_4	phrog_820	124.0	8.8e-37	major tail protein	tail
UniRef90	UHGV-0178176_4	UniRef90_A0A3A6EPU8	141.0	3.46e-39	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0178176_4	428125.CLOLEP_00178	212.0	0	Belongs to the glycosyl hydrolase family 6	N/A
COG	UHGV-0178176_4	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178176_5	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0178176_6	phrog_556	60.4	3.1e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0178176_6	428125.CLOLEP_00180	61.6	0.000000000129	Minor capsid protein	N/A
Pfam	UHGV-0178176_6	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0178176_6	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0178176_7	phrog_793	40.8	0.000000000038	head-tail adaptor	connector
Pfam	UHGV-0178176_7	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
structural_annotation	UHGV-0178176_7	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0178176_8	phrog_541	105.6	3.5e-31	head-tail adaptor	connector
UniRef90	UHGV-0178176_8	UniRef90_F5L4I5	57.0	0.000000136	Protein gp8	N/A
eggNOG-mapper	UHGV-0178176_8	986075.CathTA2_0698	57.0	0.0000000228	N/A	N/A
PHROG	UHGV-0178176_9	phrog_422	326.9	0	major head protein	head and packaging
UniRef90	UHGV-0178176_9	UniRef90_A0A316T938	392.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0178176_9	428125.CLOLEP_00183	414.0	0	COG NOG28280 non supervised orthologous group	N/A
structural_annotation	UHGV-0178176_9	PF19821,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
COG	UHGV-0178176_11	COG0783	N/A	N/A	DNA-binding ferritin-like protein (oxidative damage protectant)	N/A
structural_annotation	UHGV-0178176_11	PF14530,MF_01441,NF009990,COG0783	N/A	N/A	N/A	N/A
PHROG	UHGV-0178176_14	phrog_581	200.0	0	minor head protein	head and packaging
UniRef90	UHGV-0178176_14	UniRef90_A0A1C6FMR4	239.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0178176_14	428125.CLOLEP_01802	226.0	0	N/A	N/A
Pfam	UHGV-0178176_14	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0178176_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178176_14	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0178176_15	phrog_533	387.4	0	portal protein	head and packaging
UniRef90	UHGV-0178176_15	UniRef90_UPI001898C571	601.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0178176_15	428125.CLOLEP_01803	578.0	0	N/A	N/A
Pfam	UHGV-0178176_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0178176_15	TIGR01542.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0178176_15	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0178176_16	K06909	95.8	5.3e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0178176_16	phrog_2	88.0	1.8e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0178176_16	UniRef90_UPI001D102108	447.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0178176_16	1032362.F6K8Q6_9CAUD	449.0	0	DNA packaging	N/A
Pfam	UHGV-0178176_16	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
structural_annotation	UHGV-0178176_16	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0178176_18	phrog_36	61.0	2.8e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0178176_18	UniRef90_UPI00137B3314	75.5	0.00000000000000903	N/A	N/A
eggNOG-mapper	UHGV-0178176_18	994573.T472_0214010	69.3	0.000000000000369	sigma factor activity	N/A
Pfam	UHGV-0178176_18	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0178176_18	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0178176_18	PF04545,MF_00674,TIGR02980,COG1595	N/A	N/A	N/A	N/A
UniRef90	UHGV-0178176_20	UniRef90_UPI0019D1E2CF	184.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0178176_20	742735.HMPREF9467_00909	194.0	0	N/A	N/A
Pfam	UHGV-0178176_20	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0178176_20	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-0178176_22	K00558	45.0	0.00000000000092	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0178176_22	phrog_757	116.5	1.9e-34	DNA methyltransferase	other
UniRef90	UHGV-0178176_22	UniRef90_A0A8D9PDD1	340.0	0	DNA (Cytosine 5) methyltransferase	N/A
eggNOG-mapper	UHGV-0178176_22	622312.ROSEINA2194_01264	317.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0178176_22	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0178176_22	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0178176_22	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0178176_23	phrog_5070	203.3	0	N/A	unknown function
UniRef90	UHGV-0178176_23	UniRef90_C6L9Y5	112.0	3.77e-27	Bacterial transferase hexapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0178176_23	478749.BRYFOR_05427	112.0	6.33e-28	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0178176_23	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0178176_23	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0178176_23	MF_01691,NF040481	N/A	N/A	N/A	N/A
PHROG	UHGV-0178176_28	phrog_954	150.2	8.40779e-45	DNA methyltransferase	other
UniRef90	UHGV-0178176_28	UniRef90_UPI0004115370	204.0	0	methyltransferase	N/A
eggNOG-mapper	UHGV-0178176_28	1280698.AUJS01000007_gene1028	204.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0178176_28	MTase_II_00074	155.4	0	Type II methyltransferase	RM
Pfam	UHGV-0178176_28	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0178176_28	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0178176_28	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0178176_29	phrog_801	93.7	2.9e-27	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0178176_29	UniRef90_A0A645AU75	135.0	2.54e-38	N/A	N/A
eggNOG-mapper	UHGV-0178176_29	1100790.H2ELW3_9CAUD	66.6	0.00000000000536	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-0178176_29	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
PHROG	UHGV-0178176_32	phrog_244	85.9	6e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0178176_32	33035.JPJF01000122_gene2460	119.0	3.47e-33	N/A	N/A
structural_annotation	UHGV-0178176_32	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0178176_33	K03111	111.2	1.8e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0178176_33	phrog_44	131.1	8.9e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178176_33	UniRef90_A0A558KLT5	111.0	2.19e-28	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0178176_33	578234.B8R683_9CAUD	108.0	5.91e-28	Single-strand binding protein family	N/A
Pfam	UHGV-0178176_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0178176_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0178176_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0178176_33	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A