UHGV-0178216 (vOTU-046647)

Viral Genome: UHGV-0178216

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0178216
vOTU ID	vOTU-046647
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_590669
Associated BioSample	SAMN09781782
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.97
Jumbo phage	No

Genome content
Genome length (bp)	33,501
GC content	54.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	92%
Average CDS length (bps)	642.25
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0178216_1	UniRef90_UPI001E382BCF	63.5	0.000000000882	recombination protein NinG	N/A
eggNOG-mapper	UHGV-0178216_1	478749.BRYFOR_07651	75.9	0.0000000000000257	N/A	N/A
structural_annotation	UHGV-0178216_1	TIGR03826	N/A	N/A	N/A	N/A
KOfam	UHGV-0178216_2	K07726	43.6	0.0000000000058	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0178216_2	phrog_2104	41.9	0.00000000002	N/A	unknown function
UniRef90	UHGV-0178216_2	UniRef90_X8K268	66.6	0.000000000000261	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0178216_2	888727.HMPREF9092_0491	66.6	0.0000000000000438	Helix-turn-helix	N/A
Pfam	UHGV-0178216_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178216_2	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0178216_2	PF15731,NF007481,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_4	phrog_199	101.6	8.9e-30	holin	lysis
UniRef90	UHGV-0178216_4	UniRef90_A0A316PI30	171.0	0	Holin	N/A
eggNOG-mapper	UHGV-0178216_4	580327.Tthe_0809	124.0	2.11e-34	Bacteriophage holin family	N/A
Pfam	UHGV-0178216_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0178216_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0178216_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0178216_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0178216_5	K19303	57.5	3.3e-16	mepH; murein DD-endopeptidase [EC:3.4.-.-]	N/A
PHROG	UHGV-0178216_5	phrog_329	50.4	0.0000000000000089	minor tail protein	tail
UniRef90	UHGV-0178216_5	UniRef90_A0A2V2EEK9	181.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0178216_5	357809.Cphy_0799	73.9	0.000000000000532	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	N/A
Pfam	UHGV-0178216_5	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0178216_5	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0178216_5	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0178216_5	PF00877,PF01471,NF033743,COG0791	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178216_6	PF12988	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_7	phrog_774	68.3	1.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0178216_7	397290.C810_05225	80.5	9.98e-19	N/A	N/A
structural_annotation	UHGV-0178216_8	PF14600,COG3979	N/A	N/A	N/A	N/A
KOfam	UHGV-0178216_11	K19719	168.5	0	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0178216_11	phrog_819	129.3	0	tail protein	tail
eggNOG-mapper	UHGV-0178216_11	1519439.JPJG01000060_gene1892	81.3	0.000000000000685	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0178216_11	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0178216_11	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0178216_12	phrog_1067	357.6	0	minor head protein	head and packaging
UniRef90	UHGV-0178216_12	UniRef90_A0A1C6H6B4	529.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0178216_12	1123263.AUKY01000068_gene489	377.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0178216_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0178216_12	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0178216_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0178216_12	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0178216_12	PF14594,PF13884,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_13	phrog_33	84.5	2.4e-24	distal tail protein Dit	tail
UniRef90	UHGV-0178216_13	UniRef90_A0A173Z1X4	202.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0178216_13	1262449.CP6013_2095	107.0	9.17e-26	tail component	N/A
Pfam	UHGV-0178216_13	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0178216_13	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0178216_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0178216_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_14	phrog_8462	94.7	1.5e-27	tail length tape measure protein	tail
UniRef90	UHGV-0178216_14	UniRef90_A0A7X6UMX1	157.0	3.93e-39	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0178216_14	498761.HM1_2969	171.0	2.50832e-43	nuclear chromosome segregation	N/A
COG	UHGV-0178216_14	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0178216_14	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_17	phrog_88	91.3	1.2e-26	major tail protein	tail
UniRef90	UHGV-0178216_17	UniRef90_G9YSC5	104.0	2.06e-24	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0178216_17	33035.JPJF01000039_gene278	67.0	0.0000000000565	N/A	N/A
NCBIFam	UHGV-0178216_17	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0178216_17	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_18	phrog_5	52.8	0.00000000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-0178216_18	UniRef90_A0A1C6FG30	146.0	5.80978e-42	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0178216_18	908340.HMPREF9406_2573	119.0	6.31e-32	N/A	N/A
NCBIFam	UHGV-0178216_18	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0178216_18	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178216_19	1232446.BAIE02000002_gene829	102.0	7.11e-27	N/A	N/A
structural_annotation	UHGV-0178216_19	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_20	phrog_19734	80.4	2.8e-23	N/A	unknown function
UniRef90	UHGV-0178216_20	UniRef90_A0A3R6AW46	71.2	0.000000000000123	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0178216_20	1235798.C817_04587	71.6	0.0000000000000136	N/A	N/A
structural_annotation	UHGV-0178216_20	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_21	phrog_2550	71.0	1.2e-20	N/A	unknown function
UniRef90	UHGV-0178216_21	UniRef90_R5V091	86.3	4.05e-20	Phage related protein	N/A
eggNOG-mapper	UHGV-0178216_21	1226322.HMPREF1545_00117	92.4	2.52e-23	N/A	N/A
structural_annotation	UHGV-0178216_21	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_22	phrog_10	192.6	0	major head protein	head and packaging
UniRef90	UHGV-0178216_22	UniRef90_A0A1C6H720	586.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0178216_22	1226322.HMPREF1545_00116	545.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0178216_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0178216_22	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0178216_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0178216_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0178216_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0178216_23	K06904	156.9	0	N/A	N/A
PHROG	UHGV-0178216_23	phrog_80	175.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0178216_23	UniRef90_U2SBX0	261.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0178216_23	1226322.HMPREF1545_00115	261.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0178216_23	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0178216_23	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0178216_23	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0178216_23	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_24	phrog_12	177.4	0	portal protein	head and packaging
UniRef90	UHGV-0178216_24	UniRef90_A0A0D8IVL0	553.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0178216_24	1226322.HMPREF1545_00114	471.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0178216_24	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0178216_24	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0178216_24	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0178216_24	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_25	phrog_9	294.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0178216_25	UniRef90_A0A0D8IV16	945.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0178216_25	1226322.HMPREF1545_00113	834.0	0	Phage Terminase	N/A
Pfam	UHGV-0178216_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0178216_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0178216_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0178216_25	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_26	phrog_361	54.2	0.0000000000000032	terminase small subunit	head and packaging
UniRef90	UHGV-0178216_26	UniRef90_A0A1C6H6I9	115.0	9.31e-31	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0178216_26	1033744.CAEL01000029_gene1286	60.8	0.000000000397	Phage terminase, small subunit	N/A
Pfam	UHGV-0178216_26	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0178216_26	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
Pfam	UHGV-0178216_28	PF20037	N/A	N/A	N/A	DUF6440
structural_annotation	UHGV-0178216_28	PF20037	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_31	phrog_38832	52.6	0.0000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0178216_31	1232443.BAIA02000078_gene48	116.0	5.3e-32	N/A	N/A
PHROG	UHGV-0178216_32	phrog_824	135.5	1.50001e-40	N/A	unknown function
UniRef90	UHGV-0178216_32	UniRef90_H5XZW8	124.0	1.5e-32	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0178216_32	411470.RUMGNA_02049	126.0	8.02e-34	VRR-NUC domain	N/A
Pfam	UHGV-0178216_32	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0178216_33	phrog_3584	213.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178216_33	UniRef90_I2E8X7	156.0	8.50588e-43	Gp31	N/A
eggNOG-mapper	UHGV-0178216_33	1415775.U729_1544	175.0	0	N/A	N/A
structural_annotation	UHGV-0178216_33	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_36	phrog_15609	183.0	0	N/A	unknown function
UniRef90	UHGV-0178216_36	UniRef90_UPI001246A313	138.0	8.35e-35	N/A	N/A
eggNOG-mapper	UHGV-0178216_36	1226322.HMPREF1545_00098	123.0	5.07e-30	N/A	N/A
Pfam	UHGV-0178216_36	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0178216_36	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0178216_36	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_37	phrog_8470	247.5	0	N/A	unknown function
UniRef90	UHGV-0178216_37	UniRef90_UPI001875A728	412.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0178216_37	1157490.EL26_01845	160.0	2.2e-39	PcfJ-like protein	N/A
Pfam	UHGV-0178216_37	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0178216_37	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_38	phrog_7445	40.9	0.000000000038	N/A	unknown function
UniRef90	UHGV-0178216_38	UniRef90_UPI000FD875FF	58.2	0.0000000162	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-0178216_38	913865.DOT_1302	68.9	0.000000000000185	N/A	N/A
Pfam	UHGV-0178216_38	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-0178216_38	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-0178216_39	phrog_24368	49.0	0.000000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0178216_39	742740.HMPREF9474_04313	60.8	0.00000000118	N/A	N/A
PHROG	UHGV-0178216_45	phrog_8	64.2	3.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0178216_45	UniRef90_UPI001558FCC3	71.6	0.0000000000000121	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0178216_45	1158610.UC3_02386	67.0	0.000000000000153	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0178216_45	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0178216_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0178216_45	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0178216_46	K22300	41.4	0.00000000003	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0178216_46	phrog_8	50.9	0.000000000000042	transcriptional regulator	transcription regulation
UniRef90	UHGV-0178216_46	UniRef90_UPI0013EE28F5	68.2	0.000000000000813	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0178216_46	1235802.C823_04750	61.6	0.000000000171	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0178216_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178216_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0178216_46	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0178216_47	K02342	166.2	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0178216_47	phrog_192	143.5	1.19951e-42	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178216_47	UniRef90_UPI000682CC5F	128.0	2.8e-31	3'-5' exoribonuclease	N/A
eggNOG-mapper	UHGV-0178216_47	1129374.AJE_11729	123.0	1.98e-28	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases	N/A
PADLOC	UHGV-0178216_47	cd06127	116.8	3.1e-34	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0178216_47	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0178216_47	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0178216_47	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
structural_annotation	UHGV-0178216_47	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
KOfam	UHGV-0178216_48	K06400	300.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0178216_48	phrog_95	304.8	0	integrase	integration and excision
UniRef90	UHGV-0178216_48	UniRef90_A0A352UMB6	418.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0178216_48	697281.Mahau_2563	390.0	0	resolvase	N/A
Pfam	UHGV-0178216_48	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0178216_48	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0178216_48	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0178216_48	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0178216_48	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A