UHGV-0178423 (vOTU-070090)

Viral Genome: UHGV-0178423

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0178423
vOTU ID	vOTU-070090
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_586179
Associated BioSample	SAMN09781741
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.28 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9791
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.73
Jumbo phage	No

Genome content
Genome length (bp)	41,996
GC content	57.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	92%
Average CDS length (bps)	603.47
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0178423_2	COG4451	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_6	phrog_15863	124.8	4.3e-37	N/A	unknown function
UniRef90	UHGV-0178423_6	UniRef90_A0A417HVZ9	120.0	9.19e-32	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0178423_6	1378168.N510_02965	118.0	8.05e-32	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0178423_6	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
PHROG	UHGV-0178423_9	phrog_824	144.5	2.8026e-43	N/A	unknown function
UniRef90	UHGV-0178423_9	UniRef90_A0A645CPG3	146.0	1.86933e-42	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0178423_9	665956.HMPREF1032_00132	120.0	8.9e-33	VRR_NUC	N/A
Pfam	UHGV-0178423_9	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
Pfam	UHGV-0178423_10	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
KOfam	UHGV-0178423_11	K03465	206.9	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0178423_11	phrog_85	155.4	0	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178423_11	UniRef90_A0A1Y3WR29	262.0	0	Thymidylate synthase (FAD)	N/A
eggNOG-mapper	UHGV-0178423_11	720554.Clocl_3035	244.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0178423_11	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0178423_11	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0178423_11	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0178423_11	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-0178423_12	K03111	129.0	6.1e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0178423_12	phrog_44	114.0	1.5e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178423_12	UniRef90_A0A1Q6PWP7	124.0	4.38e-34	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0178423_12	1235835.C814_03423	97.8	2.95e-24	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0178423_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0178423_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0178423_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0178423_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0178423_12	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_13	phrog_3584	217.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178423_13	UniRef90_I2E8X7	126.0	2.85e-31	Gp31	N/A
eggNOG-mapper	UHGV-0178423_13	1321814.HMPREF9089_00921	145.0	7.2e-39	N/A	N/A
Pfam	UHGV-0178423_15	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0178423_15	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_17	phrog_599	43.4	0.0000000000077	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0178423_17	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0178423_17	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
KOfam	UHGV-0178423_31	K22300	79.4	6.5e-23	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0178423_31	phrog_4	64.2	3.2e-18	transcriptional repressor	transcription regulation
UniRef90	UHGV-0178423_31	UniRef90_A0A0F4W331	77.4	0.00000000000000179	Transcriptional regulator, Cro/CI family	N/A
eggNOG-mapper	UHGV-0178423_31	1028307.EAE_21200	69.7	0.00000000000278	phage repressor	N/A
PADLOC	UHGV-0178423_31	retron_type_VI_hth_cluster2_1	42.7	0.000000000012	N/A	Retron
Pfam	UHGV-0178423_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178423_31	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0178423_31	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0178423_33	UniRef90_A0A1Q6SAI0	63.5	0.00000000111	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0178423_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178423_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0178423_33	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0178423_34	K06400	349.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0178423_34	phrog_95	330.1	0	integrase	integration and excision
UniRef90	UHGV-0178423_34	UniRef90_UPI001F48E5DD	315.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0178423_34	645991.Sgly_0308	304.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0178423_34	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0178423_34	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0178423_34	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0178423_34	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0178423_34	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178423_36	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_38	phrog_16490	43.9	0.0000000000046	N/A	unknown function
eggNOG-mapper	UHGV-0178423_38	476272.RUMHYD_01770	78.6	0.00000000000000641	N/A	N/A
PHROG	UHGV-0178423_39	phrog_22984	47.3	0.00000000000032	N/A	unknown function
PHROG	UHGV-0178423_40	phrog_21718	54.5	0.0000000000000022	N/A	unknown function
eggNOG-mapper	UHGV-0178423_40	1235790.C805_00058	88.6	6.6e-20	N/A	N/A
PHROG	UHGV-0178423_41	phrog_1271	45.7	1.4e-34	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0178423_41	742740.HMPREF9474_00056	70.1	0.000000000032	N/A	N/A
Pfam	UHGV-0178423_41	PF12855	N/A	N/A	ECL1/2/3 zinc binding proteins	Ecl1
structural_annotation	UHGV-0178423_42	PF07878,NF041264,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_45	phrog_199	93.7	2e-27	holin	lysis
UniRef90	UHGV-0178423_45	UniRef90_A0A7C6FMM1	178.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0178423_45	1216932.CM240_0689	165.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0178423_45	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0178423_45	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0178423_45	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0178423_45	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0178423_46	K21470	46.7	0.00000000000024	ycbB; L,D-transpeptidase YcbB	N/A
PHROG	UHGV-0178423_46	phrog_1493	72.1	8.2e-21	endolysin	lysis
UniRef90	UHGV-0178423_46	UniRef90_A0A1V5Q5W6	300.0	0	Putative peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-0178423_46	1246484.D479_19733	81.3	0.0000000000000232	Ami_3	N/A
Pfam	UHGV-0178423_46	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0178423_46	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0178423_46	PF18342,PF01471,PF00877,NF038080,COG4991,COG3409,COG0791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178423_48	910314.HMPREF9220_1078	55.1	0.000000044	N/A	N/A
structural_annotation	UHGV-0178423_48	PF16407,NF032891,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_49	phrog_1067	215.6	0	minor head protein	head and packaging
eggNOG-mapper	UHGV-0178423_49	1567011.A0A0A7RUI9_9VIRU	182.0	7.00649e-45	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0178423_49	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
Pfam	UHGV-0178423_49	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0178423_49	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0178423_49	PF14594,PF06848,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_50	phrog_33	80.9	2.8e-23	distal tail protein Dit	tail
UniRef90	UHGV-0178423_50	UniRef90_A0A7C6FS63	275.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0178423_50	545697.HMPREF0216_00910	147.0	4.11996e-41	tail component	N/A
COG	UHGV-0178423_50	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0178423_50	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_51	phrog_13339	378.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0178423_51	UniRef90_UPI001E46AA29	315.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0178423_51	1225805.J7KGW1_9CAUD	318.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0178423_51	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0178423_51	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
structural_annotation	UHGV-0178423_51	PF10145,TIGR01760,TIGR01843,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178423_53	1196031.ALEG01000039_gene1823	53.5	0.000000152	N/A	N/A
PHROG	UHGV-0178423_54	phrog_88	148.9	2.66247e-44	major tail protein	tail
UniRef90	UHGV-0178423_54	UniRef90_A0A7C6BMC6	261.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0178423_54	203119.Cthe_1713	84.7	8.76e-18	Maj_tail_phi13 phage major tail , phi13 family protein	N/A
Pfam	UHGV-0178423_54	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0178423_54	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0178423_54	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178423_54	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_55	phrog_5	81.9	1e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-0178423_55	UniRef90_A0A6M3K0V5	65.1	0.0000000001	Putative tail protein	N/A
Pfam	UHGV-0178423_55	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0178423_55	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0178423_55	PF04883,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178423_56	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_57	phrog_25	50.4	0.000000000000042	head closure Hc1	connector
UniRef90	UHGV-0178423_57	UniRef90_A0A7X7FI16	90.5	4.63e-21	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0178423_57	994573.T472_0211015	60.1	0.000000000475	head-tail adaptor	N/A
Pfam	UHGV-0178423_57	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0178423_57	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0178423_57	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0178423_57	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_58	phrog_40	61.0	1.6e-17	head-tail adaptor Ad1	connector
eggNOG-mapper	UHGV-0178423_58	525309.HMPREF0494_0884	52.0	0.000000195	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0178423_58	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0178423_58	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0178423_58	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_59	phrog_10	325.2	0	major head protein	head and packaging
UniRef90	UHGV-0178423_59	UniRef90_F6DMJ1	462.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0178423_59	397288.C806_00801	468.0	0	Phage capsid family	N/A
Pfam	UHGV-0178423_59	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0178423_59	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0178423_59	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0178423_59	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0178423_60	K01358	119.3	4.8e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0178423_60	phrog_94	187.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0178423_60	UniRef90_A0A2V2FK72	215.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0178423_60	1214217.ALNF01000017_gene210	144.0	6.77e-40	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0178423_60	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0178423_60	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
PHROG	UHGV-0178423_61	phrog_12	383.5	0	portal protein	head and packaging
UniRef90	UHGV-0178423_61	UniRef90_A0A7C6FQM5	563.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0178423_61	243164.DET1087	496.0	0	Portal protein	N/A
Pfam	UHGV-0178423_61	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0178423_61	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0178423_61	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0178423_61	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0178423_62	K07451	45.8	0.0000000000011	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0178423_62	phrog_2323	111.3	4.4e-33	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178423_62	UniRef90_A0A269TC76	145.0	5.88545e-43	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0178423_62	665950.HMPREF1025_02716	133.0	6.88e-39	HNH endonuclease	N/A
AcrCatalog	UHGV-0178423_62	cluster_19695	79.3	6.91e-22	NA	N/A
Pfam	UHGV-0178423_62	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0178423_62	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0178423_62	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_63	phrog_9	463.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0178423_63	UniRef90_A0A1Q6PTP4	796.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0178423_63	1540257.JQMW01000004_gene422	709.0	0	Terminase	N/A
Pfam	UHGV-0178423_63	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0178423_63	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0178423_63	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0178423_63	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0178423_64	phrog_83	107.7	1.1e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0178423_64	UniRef90_A0A2V2FLZ3	102.0	1.07e-24	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0178423_64	1209989.TepiRe1_2607	87.4	1.45e-19	Phage terminase, small subunit	N/A
Pfam	UHGV-0178423_64	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0178423_64	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0178423_64	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0178423_64	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A