UHGV-0178439 (vOTU-010994)

Viral Genome: UHGV-0178439

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0178439
vOTU ID	vOTU-010994
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_592496
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.71 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9802
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.89
Jumbo phage	No

Genome content
Genome length (bp)	33,435
GC content	52.77%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	94%
Average CDS length (bps)	549.05
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0178439_1	K07451	46.5	0.00000000000072	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0178439_1	phrog_119	85.3	7.8e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178439_1	UniRef90_A0A0D8IV26	125.0	3.51e-36	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0178439_1	1226322.HMPREF1545_00111	110.0	7.61e-31	HNH nucleases	N/A
Pfam	UHGV-0178439_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0178439_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0178439_1	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_2	phrog_36	61.5	1.8e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0178439_2	UniRef90_A0A7C6P5S1	69.7	0.00000000000175	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0178439_2	1121335.Clst_0383	76.6	6.67e-16	N/A	N/A
structural_annotation	UHGV-0178439_2	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-0178439_3	K01491	145.5	7.00649e-45	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	N/A
PHROG	UHGV-0178439_3	phrog_7320	115.6	3.4e-37	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UniRef90	UHGV-0178439_3	UniRef90_A0A0V8JCX0	129.0	1.32e-32	Bifunctional protein FolD	N/A
eggNOG-mapper	UHGV-0178439_3	743719.PaelaDRAFT_1253	124.0	1.3e-31	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	N/A
Pfam	UHGV-0178439_3	PF02882	N/A	N/A	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
COG	UHGV-0178439_3	COG0190	N/A	N/A	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	N/A
structural_annotation	UHGV-0178439_3	PF02882,MF_01576,NF010769,COG0190	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_4	phrog_355	61.8	7.5e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178439_4	UniRef90_A0A3E3I255	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0178439_4	97138.C820_00250	132.0	1.33e-38	N/A	N/A
Pfam	UHGV-0178439_4	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0178439_4	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_12	phrog_2245	73.1	4.2e-21	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0178439_12	UniRef90_A0A1E7GWT5	49.7	0.00000864	MazG domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0178439_12	428127.EUBDOL_01514	52.4	0.000000147	N/A	N/A
structural_annotation	UHGV-0178439_12	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_15	phrog_190	133.0	1.9e-39	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178439_15	UniRef90_A0A843JAF3	130.0	8.07e-37	N/A	N/A
eggNOG-mapper	UHGV-0178439_15	1121105.ATXL01000006_gene1363	99.4	3.97e-25	N/A	N/A
Pfam	UHGV-0178439_15	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0178439_15	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_16	phrog_16304	98.2	6.5e-29	N/A	unknown function
UniRef90	UHGV-0178439_16	UniRef90_UPI0011C97B10	106.0	4.29e-24	N/A	N/A
eggNOG-mapper	UHGV-0178439_16	411483.FAEPRAA2165_01877	96.3	1.9e-20	HNH endonuclease	N/A
Pfam	UHGV-0178439_16	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0178439_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0178439_17	K03111	141.5	9.30042e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0178439_17	phrog_44	142.7	2.20004e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178439_17	UniRef90_A0A2N2A191	193.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0178439_17	1042163.BRLA_c031440	131.0	1.78e-37	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0178439_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0178439_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0178439_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0178439_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0178439_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_18	phrog_7566	84.5	8.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0178439_18	483218.BACPEC_01171	77.8	2.9e-17	N/A	N/A
UniRef90	UHGV-0178439_19	UniRef90_UPI000C7BF263	79.3	0.00000000000000151	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0178439_19	445972.ANACOL_01825	90.1	2.15e-20	N/A	N/A
structural_annotation	UHGV-0178439_23	PF05339,MF_00535,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0178439_28	K18830	68.9	1.1e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0178439_28	phrog_2967	60.1	3.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0178439_28	UniRef90_A0A1C6CFH8	124.0	1.46e-34	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
eggNOG-mapper	UHGV-0178439_28	445972.ANACOL_03315	118.0	9.39e-33	N/A	N/A
Pfam	UHGV-0178439_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178439_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0178439_28	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0178439_29	K22300	78.4	1.3e-22	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0178439_29	phrog_2967	69.0	8.1e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0178439_29	UniRef90_A0A2U1BEG8	130.0	1.29e-36	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0178439_29	445972.ANACOL_03315	118.0	9.04e-33	N/A	N/A
PADLOC	UHGV-0178439_29	retron_type_VI_hth_cluster2_1	47.5	0.00000000000037	N/A	Retron
Pfam	UHGV-0178439_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178439_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0178439_29	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0178439_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178439_31	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0178439_33	K14059	124.7	1.3e-36	int; integrase	N/A
PHROG	UHGV-0178439_33	phrog_1	124.5	1.1e-36	integrase	integration and excision
UniRef90	UHGV-0178439_33	UniRef90_UPI00030B7B7C	319.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0178439_33	1007096.BAGW01000023_gene159	318.0	0	Phage integrase family	N/A
Pfam	UHGV-0178439_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0178439_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0178439_33	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_34	phrog_12389	69.8	3.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0178439_34	693746.OBV_p-00550	67.8	0.0000000000136	N/A	N/A
Pfam	UHGV-0178439_35	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-0178439_35	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
structural_annotation	UHGV-0178439_35	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178439_36	1304866.K413DRAFT_4686	70.5	0.0000000000000214	N/A	N/A
UniRef90	UHGV-0178439_38	UniRef90_UPI001C00BADA	57.8	0.00000000171	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0178439_38	1408437.JNJN01000040_gene204	73.9	1.78e-16	N/A	N/A
structural_annotation	UHGV-0178439_38	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178439_39	394503.Ccel_1297	52.0	0.000000417	N/A	N/A
PHROG	UHGV-0178439_40	phrog_1863	60.2	2.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0178439_40	1235797.C816_02840	108.0	2.14e-29	N/A	N/A
KOfam	UHGV-0178439_41	K21471	72.4	1.1e-20	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0178439_41	phrog_329	50.5	0.0000000000000025	minor tail protein	tail
UniRef90	UHGV-0178439_41	UniRef90_A0A316PD96	88.2	1.09e-17	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0178439_41	1033740.CAEW01000032_gene2157	58.5	0.000000491	NlpC/P60 family	N/A
Pfam	UHGV-0178439_41	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0178439_41	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0178439_41	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0178439_41	PF00877,PF18342,NF033742,NF041850,COG0791,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_43	phrog_372	160.6	0	tail protein	tail
UniRef90	UHGV-0178439_43	UniRef90_UPI00195FD9F2	100.0	2.19e-18	N/A	N/A
eggNOG-mapper	UHGV-0178439_43	428127.EUBDOL_01566	125.0	6.12e-27	domain, Protein	N/A
Pfam	UHGV-0178439_43	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0178439_43	COG3210	N/A	N/A	Large exoprotein involved in heme utilization or adhesion	N/A
structural_annotation	UHGV-0178439_43	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_44	phrog_1067	209.0	0	minor head protein	head and packaging
UniRef90	UHGV-0178439_44	UniRef90_A0A1C6H6B4	343.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0178439_44	1123263.AUKY01000068_gene489	286.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0178439_44	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0178439_44	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0178439_44	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0178439_44	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_45	phrog_33	63.8	4.7e-18	distal tail protein Dit	tail
UniRef90	UHGV-0178439_45	UniRef90_A0A1C6H6D2	166.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0178439_45	1123263.AUKY01000068_gene490	103.0	2.67e-24	tail component	N/A
COG	UHGV-0178439_45	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0178439_45	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_46	phrog_3981	74.8	1.5e-21	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0178439_46	720554.Clocl_3669	228.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0178439_46	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-0178439_46	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_48	phrog_88	94.2	1.2e-27	major tail protein	tail
NCBIFam	UHGV-0178439_48	TIGR01603.1	N/A	N/A	major tail protein	N/A
PHROG	UHGV-0178439_49	phrog_5	45.4	0.0000000000017	tail completion or Neck1 protein	connector
UniRef90	UHGV-0178439_49	UniRef90_R6UNR2	141.0	4.52e-40	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0178439_49	908340.HMPREF9406_2573	141.0	7.56995e-41	N/A	N/A
structural_annotation	UHGV-0178439_49	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178439_50	1235798.C817_04588	78.2	2.68e-17	N/A	N/A
structural_annotation	UHGV-0178439_50	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_51	phrog_19734	80.6	2.2e-23	N/A	unknown function
UniRef90	UHGV-0178439_51	UniRef90_A0A3R6AW46	97.1	1.01e-23	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0178439_51	1235798.C817_04587	78.6	2.82e-17	N/A	N/A
structural_annotation	UHGV-0178439_51	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_52	phrog_2550	81.1	7.3e-24	N/A	unknown function
UniRef90	UHGV-0178439_52	UniRef90_R5V091	79.7	1.33e-17	Phage related protein	N/A
eggNOG-mapper	UHGV-0178439_52	1226322.HMPREF1545_00117	93.6	7.54e-24	N/A	N/A
structural_annotation	UHGV-0178439_52	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_53	phrog_10	216.9	0	major head protein	head and packaging
UniRef90	UHGV-0178439_53	UniRef90_UPI000679B959	654.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0178439_53	1226322.HMPREF1545_00116	576.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0178439_53	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0178439_53	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0178439_53	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0178439_53	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0178439_54	K06904	145.5	4.49817e-43	N/A	N/A
PHROG	UHGV-0178439_54	phrog_80	165.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0178439_54	UniRef90_U2SBX0	291.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0178439_54	1226322.HMPREF1545_00115	291.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0178439_54	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0178439_54	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0178439_54	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0178439_54	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_55	phrog_12	189.3	0	portal protein	head and packaging
UniRef90	UHGV-0178439_55	UniRef90_A0A0D8IVL0	565.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0178439_55	1226322.HMPREF1545_00114	483.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0178439_55	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0178439_55	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0178439_55	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0178439_55	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_56	phrog_9	294.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0178439_56	UniRef90_A0A2V2GQ67	1010.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0178439_56	1226322.HMPREF1545_00113	910.0	0	Phage Terminase	N/A
Pfam	UHGV-0178439_56	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0178439_56	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0178439_56	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0178439_56	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0178439_57	phrog_361	64.0	2.7e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0178439_57	UniRef90_A0A1C6H6I9	142.0	2.25006e-41	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0178439_57	1033744.CAEL01000029_gene1286	84.0	3.11e-19	Phage terminase, small subunit	N/A
Pfam	UHGV-0178439_57	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0178439_57	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A