UHGV-0178724 (vOTU-162883)

Viral Genome: UHGV-0178724

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0178724
vOTU ID	vOTU-162883
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_578627
Associated BioSample	SAMN07501328
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.63 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.981
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.48
Jumbo phage	No

Genome content
Genome length (bp)	28,165
GC content	29.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	91%
Average CDS length (bps)	691.87
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0178724_2	phrog_10625	51.7	0.000000000000015	N/A	unknown function
structural_annotation	UHGV-0178724_2	PF14634	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_3	phrog_434	387.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178724_3	UniRef90_A0A381IQA0	584.0	0	Phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0178724_3	195103.CPF_0938	493.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0178724_3	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0178724_3	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0178724_3	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0178724_3	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0178724_4	K07455	226.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0178724_4	phrog_148	236.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178724_4	UniRef90_A0A381IQD3	558.0	0	RecT family protein	N/A
eggNOG-mapper	UHGV-0178724_4	195103.CPF_0939	511.0	0	RecT family	N/A
Pfam	UHGV-0178724_4	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0178724_4	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0178724_4	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0178724_4	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_5	phrog_2514	129.1	3.8e-38	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178724_5	UniRef90_A0A2X3AHR7	220.0	0	N/A	N/A
eggNOG-mapper	UHGV-0178724_5	1415775.U729_2588	258.0	0	DnaD domain protein	N/A
COG	UHGV-0178724_5	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0178724_5	PF09681,PF17214,MF_01819,TIGR01714,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_6	phrog_803	47.8	0.0000000000003	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0178724_6	1391647.AVSV01000003_gene1785	74.3	3.75e-17	N/A	N/A
KOfam	UHGV-0178724_8	K01160	46.6	0.00000000000083	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0178724_8	phrog_140	115.2	4.7e-34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178724_8	UniRef90_UPI001ABAB1E8	254.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0178724_8	195103.CPF_0942	224.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0178724_8	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0178724_8	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0178724_8	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_11	phrog_36	80.5	2.4e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0178724_11	UniRef90_A0A0N6WDZ3	298.0	0	Putative sigma factor	N/A
eggNOG-mapper	UHGV-0178724_11	195103.CPF_0945	264.0	0	sigma factor activity	N/A
COG	UHGV-0178724_11	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0178724_11	PF05263,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178724_14	1233951.IO90_14805	124.0	1.21e-31	ribosomal protein import into nucleus	N/A
KOfam	UHGV-0178724_15	K07474	111.6	1.3e-32	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0178724_15	phrog_2606	311.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-0178724_15	UniRef90_UPI0007080FC3	587.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0178724_15	536233.CLO_1833	262.0	0	terminase, small subunit	N/A
Pfam	UHGV-0178724_15	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-0178724_15	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0178724_15	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0178724_15	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0178724_16	K06909	120.2	2.4e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0178724_16	phrog_2	68.6	1.4e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0178724_16	UniRef90_A0A0H2YW07	897.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0178724_16	1305708.M9Q2I1_9CAUD	921.0	0	DNA packaging	N/A
Pfam	UHGV-0178724_16	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
structural_annotation	UHGV-0178724_16	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_17	phrog_533	310.5	0	portal protein	head and packaging
UniRef90	UHGV-0178724_17	UniRef90_A0A0A7FUH2	885.0	0	Phage portal, SPP1 Gp6-like family protein	N/A
eggNOG-mapper	UHGV-0178724_17	1415775.U729_2601	885.0	0	N/A	N/A
structural_annotation	UHGV-0178724_17	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_18	phrog_581	231.3	0	minor head protein	head and packaging
UniRef90	UHGV-0178724_18	UniRef90_UPI000B1AB55F	601.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0178724_18	1305708.M9Q2F2_9CAUD	486.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0178724_18	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
eggNOG-mapper	UHGV-0178724_20	588581.Cpap_1521	79.7	4.14e-18	N/A	N/A
PHROG	UHGV-0178724_21	phrog_918	122.5	1.2e-36	N/A	unknown function
UniRef90	UHGV-0178724_21	UniRef90_UPI0005DA7338	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-0178724_21	1499683.CCFF01000014_gene3910	179.0	0	N/A	N/A
Pfam	UHGV-0178724_21	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0178724_21	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_22	phrog_2303	171.4	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0178724_22	UniRef90_A0A0N7BTJ7	286.0	0	N/A	N/A
eggNOG-mapper	UHGV-0178724_22	1305708.M9Q248_9CAUD	317.0	0	N/A	N/A
structural_annotation	UHGV-0178724_22	PF10788	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_23	phrog_422	361.3	0	major head protein	head and packaging
UniRef90	UHGV-0178724_23	UniRef90_A0A0A7FYK2	565.0	0	Putative phage major capsid protein	N/A
eggNOG-mapper	UHGV-0178724_23	1305708.M9Q2F4_9CAUD	593.0	0	N/A	N/A
structural_annotation	UHGV-0178724_23	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_24	phrog_1378	96.3	1.7e-28	N/A	unknown function
UniRef90	UHGV-0178724_24	UniRef90_A0A0B3VH35	71.2	0.0000000000000194	HALZ domain-containing protein	N/A
eggNOG-mapper	UHGV-0178724_24	195103.CPF_0957	113.0	1.08e-31	N/A	N/A
PHROG	UHGV-0178724_25	phrog_541	87.4	1.4e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0178724_25	1391647.AVSV01000003_gene1810	211.0	0	N/A	N/A
PHROG	UHGV-0178724_26	phrog_8710	151.6	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0178724_26	1391647.AVSV01000003_gene1811	206.0	0	N/A	N/A
structural_annotation	UHGV-0178724_26	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_27	phrog_556	70.2	3e-20	minor head protein	head and packaging
UniRef90	UHGV-0178724_27	UniRef90_UPI001C8D6722	203.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0178724_27	195103.CPF_0960	251.0	0	N/A	N/A
PHROG	UHGV-0178724_28	phrog_2595	122.5	2.2e-36	head-tail connector protein	connector
UniRef90	UHGV-0178724_28	UniRef90_UPI001C8D62C5	222.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0178724_28	195103.CPF_0961	261.0	0	N/A	N/A
Pfam	UHGV-0178724_28	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0178724_28	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_29	phrog_820	130.4	8.7e-39	major tail protein	tail
eggNOG-mapper	UHGV-0178724_29	195103.CPF_0962	286.0	0	N/A	N/A
structural_annotation	UHGV-0178724_29	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_30	phrog_8300	107.5	6.7e-32	N/A	unknown function
eggNOG-mapper	UHGV-0178724_30	195103.CPF_0963	191.0	0	N/A	N/A
structural_annotation	UHGV-0178724_30	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_31	phrog_8355	143.1	2.99878e-43	N/A	unknown function
UniRef90	UHGV-0178724_31	UniRef90_M9Q2I4	204.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0178724_31	1415775.U729_2613	182.0	0	N/A	N/A
Pfam	UHGV-0178724_31	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0178724_31	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_32	phrog_1535	587.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0178724_32	UniRef90_A0A0H2YR97	1672.0	0	Putative membrane protein	N/A
eggNOG-mapper	UHGV-0178724_32	195103.CPF_0965	1672.0	0	phage tail tape measure protein	N/A
COG	UHGV-0178724_32	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_33	phrog_1194	130.2	7.8e-39	N/A	unknown function
UniRef90	UHGV-0178724_33	UniRef90_A0A0L8EWZ8	145.0	6.83834e-43	N/A	N/A
eggNOG-mapper	UHGV-0178724_33	195103.CPF_0966	229.0	0	N/A	N/A
Pfam	UHGV-0178724_33	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0178724_33	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_34	phrog_15246	173.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0178724_34	195103.CPF_0967	152.0	0	N/A	N/A
PHROG	UHGV-0178724_35	phrog_1401	120.0	1.3e-35	N/A	unknown function
UniRef90	UHGV-0178724_35	UniRef90_UPI00077668B1	228.0	0	N/A	N/A
eggNOG-mapper	UHGV-0178724_35	195103.CPF_0968	239.0	0	N/A	N/A
structural_annotation	UHGV-0178724_35	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0178724_36	phrog_16267	1025.2	0	N/A	unknown function
UniRef90	UHGV-0178724_36	UniRef90_B1RB98	2157.0	0	KID repeat family protein	N/A
eggNOG-mapper	UHGV-0178724_36	1305708.M9Q2I5_9CAUD	2707.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0178724_36	PF15711	N/A	N/A	Interleukin-like EMT inducer	ILEI
structural_annotation	UHGV-0178724_36	PF05113,PF04300,PF03944,NF033848,NF033675,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178724_37	1305708.M9Q253_9CAUD	108.0	4.53e-30	Pfam:Phage_holin_4_1	N/A
Pfam	UHGV-0178724_37	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1