UHGV-0179081 (vOTU-135986)

Viral Genome: UHGV-0179081

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0179081
vOTU ID	vOTU-135986
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_585946
Associated BioSample	SAMN09781745
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.11 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.33
Jumbo phage	No

Genome content
Genome length (bp)	33,526
GC content	33.36%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	96%
Average CDS length (bps)	681.51
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.11)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0179081_1	K02316	110.8	1.6e-32	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0179081_1	phrog_47	130.6	1.7e-38	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179081_1	UniRef90_A0A7X7EMQ9	253.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0179081_1	871584.D9ZNG6_9CAUD	230.0	0	Toprim-like	N/A
Pfam	UHGV-0179081_1	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0179081_1	PF13155	N/A	N/A	Toprim-like	Toprim_2
structural_annotation	UHGV-0179081_1	PF13155,PF01807,PF08275,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
KOfam	UHGV-0179081_2	K00390	50.0	7.4e-16	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0179081_2	phrog_424	93.7	9.7e-28	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0179081_2	UniRef90_E9RTK9	362.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0179081_2	397291.C804_00950	362.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0179081_2	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0179081_2	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0179081_2	PF01507,MF_00063,TIGR02055,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0179081_3	K02314	103.1	3.1e-30	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0179081_3	phrog_19	155.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179081_3	UniRef90_A0A843GEY3	381.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0179081_3	871584.D9ZNG4_9CAUD	276.0	0	DNA helicase activity	N/A
Pfam	UHGV-0179081_3	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
structural_annotation	UHGV-0179081_3	PF03796,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0179081_4	K02315	114.9	8.6e-34	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0179081_4	phrog_50	130.7	1.4e-38	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179081_4	UniRef90_A0A7X8JSS1	189.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0179081_4	665950.HMPREF1025_01422	136.0	2.99e-37	Bacterial dnaA protein	N/A
Pfam	UHGV-0179081_4	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0179081_4	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0179081_4	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_5	phrog_2113	47.9	0.00000000000011	N/A	unknown function
structural_annotation	UHGV-0179081_5	PF06163,TIGR00738,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_6	phrog_6969	94.6	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0179081_6	556269.ACDQ01000002_gene1168	86.7	3.68e-17	DnaD domain protein	N/A
Pfam	UHGV-0179081_6	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0179081_6	COG3756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179081_7	PF05777,MF_01186,COG2980	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_8	phrog_34398	55.0	0.0000000000000012	N/A	unknown function
structural_annotation	UHGV-0179081_9	PF13411,NF033499,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_11	phrog_7168	113.8	1.6e-33	homing endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0179081_11	476272.RUMHYD_01972	97.8	1.12e-20	GIY-YIG type nucleases (URI domain)	N/A
PADLOC	UHGV-0179081_11	HEase_00030	76.6	4.6e-22	homing endonuclease	RM
Pfam	UHGV-0179081_11	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-0179081_11	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
NCBIFam	UHGV-0179081_11	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
COG	UHGV-0179081_11	COG3860	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179081_11	PF19835,PF07460,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0179081_12	K14440	321.7	0	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0179081_12	phrog_62	356.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179081_12	UniRef90_D9ZNF7	500.0	0	Putative helicase	N/A
eggNOG-mapper	UHGV-0179081_12	871584.D9ZNF7_9CAUD	500.0	0	helicase activity	N/A
PADLOC	UHGV-0179081_12	ZorD1_00003	176.7	0	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0179081_12	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0179081_12	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
structural_annotation	UHGV-0179081_12	PF00176,PF00271,PF07443,MF_01821,NF041790,TIGR01158,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179081_13	PF08029,MF_00476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179081_16	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_17	phrog_16490	57.5	8.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0179081_17	641112.ACOK01000103_gene525	94.4	4.24e-21	N/A	N/A
PHROG	UHGV-0179081_19	phrog_21718	54.9	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0179081_19	476272.RUMHYD_01768	61.2	0.000000000665	N/A	N/A
UniRef90	UHGV-0179081_20	UniRef90_A0A843HPX3	83.2	1.05e-19	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0179081_20	1235790.C805_00057	48.1	0.00000129	N/A	N/A
structural_annotation	UHGV-0179081_20	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_22	phrog_881	85.6	3.2e-25	holin	lysis
UniRef90	UHGV-0179081_22	UniRef90_A0A2N6UFU4	70.9	0.0000000000000102	Holin	N/A
eggNOG-mapper	UHGV-0179081_22	1158614.I592_02317	68.6	0.0000000000000147	Putative phage holin Dp-1	N/A
Pfam	UHGV-0179081_22	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0179081_22	PF16938	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179081_23	665956.HMPREF1032_03922	50.4	0.000000717	N/A	N/A
KOfam	UHGV-0179081_25	K02395	44.6	0.0000000000025	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0179081_25	phrog_3513	54.5	9.1e-16	endolysin	lysis
UniRef90	UHGV-0179081_25	UniRef90_R5ZWS5	289.0	0	Peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-0179081_25	1158612.I580_00212	64.3	0.00000000179	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0179081_25	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0179081_25	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0179081_25	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0179081_25	PF01157,MF_01354,NF009358,NF003303,COG1705,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_26	phrog_19291	165.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0179081_26	1118057.CAGX01000043_gene476	169.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-0179081_26	PF02191,COG3823	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179081_27	483218.BACPEC_01321	106.0	2.1e-22	N/A	N/A
PHROG	UHGV-0179081_28	phrog_18190	128.2	4.7e-39	N/A	unknown function
eggNOG-mapper	UHGV-0179081_28	1449050.JNLE01000003_gene3879	95.9	1.13e-17	N/A	N/A
structural_annotation	UHGV-0179081_28	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179081_29	1235790.C805_00088	79.3	5.75e-17	N/A	N/A
Pfam	UHGV-0179081_29	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0179081_29	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_30	phrog_1535	155.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0179081_30	UniRef90_R6TDK7	368.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0179081_30	1226322.HMPREF1545_00059	306.0	0	tape measure	N/A
COG	UHGV-0179081_30	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0179081_30	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_31	phrog_706	133.3	1.8e-39	N/A	unknown function
UniRef90	UHGV-0179081_31	UniRef90_UPI0011DC8B0C	184.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0179081_31	1449050.JNLE01000003_gene3882	175.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0179081_31	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0179081_31	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_32	phrog_11299	103.6	1.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0179081_32	665956.HMPREF1032_03059	66.6	0.0000000000057	N/A	N/A
structural_annotation	UHGV-0179081_32	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_33	phrog_3099	143.7	9.89317e-43	N/A	unknown function
eggNOG-mapper	UHGV-0179081_33	1160721.RBI_II00532	197.0	0	N/A	N/A
structural_annotation	UHGV-0179081_33	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_34	phrog_3266	59.7	4.5e-17	tail completion	connector
structural_annotation	UHGV-0179081_34	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_35	phrog_556	51.1	0.000000000000024	minor head protein	head and packaging
UniRef90	UHGV-0179081_35	UniRef90_UPI001C3B04D8	106.0	1.11e-26	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0179081_35	397290.C810_05200	84.3	1.71e-18	N/A	N/A
Pfam	UHGV-0179081_35	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0179081_35	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_36	phrog_3366	62.8	6.8e-18	N/A	unknown function
structural_annotation	UHGV-0179081_36	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_37	phrog_541	52.0	0.000000000000013	head-tail adaptor	connector
UniRef90	UHGV-0179081_39	UniRef90_A0A0M2NI16	367.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0179081_39	903814.ELI_3108	77.0	0.000000000000567	phage major tail protein, phi13 family	N/A
Pfam	UHGV-0179081_39	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
COG	UHGV-0179081_39	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179081_39	PF05065,PF18316,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_40	phrog_194	67.5	2e-19	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0179081_40	663278.Ethha_0497	77.4	0.00000000000000526	N/A	N/A
Pfam	UHGV-0179081_40	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0179081_40	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_41	phrog_581	159.3	0	minor head protein	head and packaging
UniRef90	UHGV-0179081_41	UniRef90_A0A136WBX5	250.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0179081_41	693746.OBV_18050	187.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0179081_41	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0179081_41	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179081_41	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_42	phrog_533	312.9	0	portal protein	head and packaging
UniRef90	UHGV-0179081_42	UniRef90_A0A6L5T8J5	334.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0179081_42	642492.Clole_0815	291.0	0	N/A	N/A
Pfam	UHGV-0179081_42	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0179081_42	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0179081_43	phrog_236	45.8	0.0000000000016	nucleotide kinase	other
UniRef90	UHGV-0179081_43	UniRef90_A0A5A9X7F5	60.1	0.00000000157	N/A	N/A
eggNOG-mapper	UHGV-0179081_43	753084.F4YCI8_9CAUD	51.6	0.00000183	N/A	N/A
Pfam	UHGV-0179081_43	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0179081_44	phrog_1233	71.1	2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0179081_44	357809.Cphy_2967	68.9	0.00000000000018	N/A	N/A
KOfam	UHGV-0179081_45	K06909	381.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0179081_45	phrog_3717	157.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0179081_45	UniRef90_A0A374ADY0	490.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0179081_45	411461.DORFOR_01162	442.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0179081_45	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0179081_45	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0179081_45	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0179081_45	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0179081_45	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0179081_46	K07474	89.8	6.8e-26	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0179081_46	phrog_51	98.2	6.6e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0179081_46	UniRef90_UPI00115BDA84	101.0	8.38e-25	terminase small subunit	N/A
eggNOG-mapper	UHGV-0179081_46	1235800.C819_00494	105.0	3.4e-27	Terminase small subunit	N/A
Pfam	UHGV-0179081_46	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0179081_46	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0179081_46	PF03592,COG3728	N/A	N/A	N/A	N/A